jgi.p|Nanoce1779_2|575041, mRNA_1018 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575041
Unique NamemRNA_1018
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length999
Alignment locationscaffold_2:1027299..1028297 +

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Properties
Property NameValue
TranscriptId575127
TrackFilteredModels2
ProteinId575041
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1027299..1028297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575041gene_1018Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575041mRNA_1018-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1018CDS_1018Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1018 ID=mRNA_1018|Name=jgi.p|Nanoce1779_2|575041|organism=Nannochloropsis oceanica|type=mRNA|length=999bp
ATGCCTGGATCTGTGAGCTCGGGCAGTTGAGGAGCGTGAAAATGCAGTAT
GAAGGTCACAATGGGGTTGGACATGGCAACGGCATCATGACAATGATGAC
GCCCAGGAAGGAAGACCCGGACTCCTGAACAACTTGCGGCCCCATTTTTA
CAACAAACCCACCAAGCACACACAGGCAGGCTTGAAATTCCTCTCTTCAT
CCCACGGAAATGATGAGCCGGTTTGCGTCCTTCTTTGGGCGCGCCGCCGA
GGACGAAGACGAGGAAGCCAACGCCTCTGCCCCAGCTCCCACGCCTGCAA
CTGTCCCGCACCAGTCCACTCGCCATTCCTCCCGTCAGCCTGCCTCGTCC
CCGCCAAAGCAGTCGTCCTCTACATCCGCCTCCAACAGCACTAACCGGCC
TCGCTCGGGGAGCAGCAGCAGCAGCGGGAGCGGGGGCAACTCGAGACACA
AAGGTGGGAAGCGAAAAGCCAGCACGGTCAAGGCGCAAGCTGCGGCCATG
GGCGTGACACTGGGCGTTTCGCCTCGCTCGGCCGCTGCTTTGAATAAGTT
GCAGCGTTATAATCAGGAGTTGGAGGCCCTTGAGAATGAAGTGGCAGACA
TGGAGGCAGCGTTACAAGACTATCCCCGCACGCCCCGATCCCGGCTGTTG
GAAGCTAAGGATCAGATTGCCCAGATGAATGGGAGTTTGGAGAAGCTCCA
GTACAGTGGCGTCGATTCTATTATAACAGCTGAATTGGAGAGTGGGAAGG
AACGGGCGAAGGAGAAGCGGAAGTCGTTGAACCAACGGTGTGATGCTTTA
AGGGAGCGGATTTTGCAGGATTCGAAGGATTTGCAGAAGATGCTGGCGGC
TGGGGGTGGGAGGTAGTAAAGGAAAAGTACAGCAGGGAGTACGGGGAGAA
GGGATGAAAGTTTAGGGTGTAACCTAGTGTTTGGGAAAATCTGTGTACGG
TGAAGGAAGCTAAGGGAATCATGTTCGTGGCAAGGGGAAAATGAAGAAG
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protein sequence of jgi.p|Nanoce1779_2|575041

>mRNA_1018-protein ID=mRNA_1018-protein|Name=jgi.p|Nanoce1779_2|575041|organism=Nannochloropsis oceanica|type=polypeptide|length=219bp
MMSRFASFFGRAAEDEDEEANASAPAPTPATVPHQSTRHSSRQPASSPPK
QSSSTSASNSTNRPRSGSSSSSGSGGNSRHKGGKRKASTVKAQAAAMGVT
LGVSPRSAAALNKLQRYNQELEALENEVADMEAALQDYPRTPRSRLLEAK
DQIAQMNGSLEKLQYSGVDSIITAELESGKERAKEKRKSLNQRCDALRER
ILQDSKDLQKMLAAGGGR*
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mRNA from alignment at scaffold_2:1027299..1028297+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1018 ID=mRNA_1018|Name=jgi.p|Nanoce1779_2|575041|organism=Nannochloropsis oceanica|type=mRNA|length=999bp|location=Sequence derived from alignment at scaffold_2:1027299..1028297+ (Nannochloropsis oceanica)
ATGCCTGGATCTGTGAGCTCGGGCAGTTGAGGAGCGTGAAAATGCAGTAT
GAAGGTCACAATGGGGTTGGACATGGCAACGGCATCATGACAATGATGAC
GCCCAGGAAGGAAGACCCGGACTCCTGAACAACTTGCGGCCCCATTTTTA
CAACAAACCCACCAAGCACACACAGGCAGGCTTGAAATTCCTCTCTTCAT
CCCACGGAAATGATGAGCCGGTTTGCGTCCTTCTTTGGGCGCGCCGCCGA
GGACGAAGACGAGGAAGCCAACGCCTCTGCCCCAGCTCCCACGCCTGCAA
CTGTCCCGCACCAGTCCACTCGCCATTCCTCCCGTCAGCCTGCCTCGTCC
CCGCCAAAGCAGTCGTCCTCTACATCCGCCTCCAACAGCACTAACCGGCC
TCGCTCGGGGAGCAGCAGCAGCAGCGGGAGCGGGGGCAACTCGAGACACA
AAGGTGGGAAGCGAAAAGCCAGCACGGTCAAGGCGCAAGCTGCGGCCATG
GGCGTGACACTGGGCGTTTCGCCTCGCTCGGCCGCTGCTTTGAATAAGTT
GCAGCGTTATAATCAGGAGTTGGAGGCCCTTGAGAATGAAGTGGCAGACA
TGGAGGCAGCGTTACAAGACTATCCCCGCACGCCCCGATCCCGGCTGTTG
GAAGCTAAGGATCAGATTGCCCAGATGAATGGGAGTTTGGAGAAGCTCCA
GTACAGTGGCGTCGATTCTATTATAACAGCTGAATTGGAGAGTGGGAAGG
AACGGGCGAAGGAGAAGCGGAAGTCGTTGAACCAACGGTGTGATGCTTTA
AGGGAGCGGATTTTGCAGGATTCGAAGGATTTGCAGAAGATGCTGGCGGC
TGGGGGTGGGAGGTAGTAAAGGAAAAGTACAGCAGGGAGTACGGGGAGAA
GGGATGAAAGTTTAGGGTGTAACCTAGTGTTTGGGAAAATCTGTGTACGG
TGAAGGAAGCTAAGGGAATCATGTTCGTGGCAAGGGGAAAATGAAGAAG
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Coding sequence (CDS) from alignment at scaffold_2:1027299..1028297+

>mRNA_1018 ID=mRNA_1018|Name=jgi.p|Nanoce1779_2|575041|organism=Nannochloropsis oceanica|type=CDS|length=657bp|location=Sequence derived from alignment at scaffold_2:1027299..1028297+ (Nannochloropsis oceanica)
ATGATGAGCCGGTTTGCGTCCTTCTTTGGGCGCGCCGCCGAGGACGAAGA
CGAGGAAGCCAACGCCTCTGCCCCAGCTCCCACGCCTGCAACTGTCCCGC
ACCAGTCCACTCGCCATTCCTCCCGTCAGCCTGCCTCGTCCCCGCCAAAG
CAGTCGTCCTCTACATCCGCCTCCAACAGCACTAACCGGCCTCGCTCGGG
GAGCAGCAGCAGCAGCGGGAGCGGGGGCAACTCGAGACACAAAGGTGGGA
AGCGAAAAGCCAGCACGGTCAAGGCGCAAGCTGCGGCCATGGGCGTGACA
CTGGGCGTTTCGCCTCGCTCGGCCGCTGCTTTGAATAAGTTGCAGCGTTA
TAATCAGGAGTTGGAGGCCCTTGAGAATGAAGTGGCAGACATGGAGGCAG
CGTTACAAGACTATCCCCGCACGCCCCGATCCCGGCTGTTGGAAGCTAAG
GATCAGATTGCCCAGATGAATGGGAGTTTGGAGAAGCTCCAGTACAGTGG
CGTCGATTCTATTATAACAGCTGAATTGGAGAGTGGGAAGGAACGGGCGA
AGGAGAAGCGGAAGTCGTTGAACCAACGGTGTGATGCTTTAAGGGAGCGG
ATTTTGCAGGATTCGAAGGATTTGCAGAAGATGCTGGCGGCTGGGGGTGG
GAGGTAG
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Synonyms
Publications