jgi.p|Nanoce1779_2|610079, mRNA_10179 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|610079
Unique Name	mRNA_10179
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1033
Alignment location	scaffold_48:79272..81251 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	610165
Track	FilteredModels2
ProteinId	610079

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_48	supercontig	scaffold_48:79272..81251 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|610079	gene_10179	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|610079	mRNA_10179-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10179	CDS_10179	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_48:79272..81251+
coding sequence from alignment at scaffold_48:79272..81251+

mRNA sequence

>mRNA_10179 ID=mRNA_10179|Name=jgi.p|Nanoce1779_2|610079|organism=Nannochloropsis oceanica|type=mRNA|length=1033bp
CGTGACCGAGGAGGACTTTAATGATGGATCGTATGTCTCGAAGCTCAAGA
AGGAATACAGACGGACACCGCCCTTGACCAAGGTAAGGTGCAAGGGAGGG
AGGACGGGAGGGAGGACAAAAGAGGAAGGACAGCTGGATGATGTCCCTCG
GGGCTCACCACCCAAACACCGCTCTCTCCGTCCTCCTTCGCTCTCTTCCC
TCCCTCCCTCACTCACTGCAGGCCTACCTCCTCACCTCCCTGGGGCTGAC
GGGTGCGGCGATGCTCTTTAACAAGAACCAGTGGCCTGAGTGGCTCCTGC
TCGACTGGAGCAAGGTCTTTACCAGGCTGCAGCTATGGCGCCCCCTCACC
TCATTCCTGTACTTCGGTACCTTCGGCTTCAACTACCTGCTGTCCGCGCA
CTTTATGTGGACCTACATGTCCCATCTCGAGAAACTCAAGTGCAAGAATC
CGGCAGAGTTTGTGACTATGGTGGCCTTCGGCGTCGCATTCCTCCTGGCC
GGGAGCCAAGTGATGGGCTTCCAACCGCACTACCTCGGCCACAACCTCAG
CTGCTACCTGGTCTATATCTGGAGTCGGATGTTCGAAGGACAGGACGTGG
ACGTGATGGGTCTATTCCATCTCCCCGCACACCTCCTTCCCTGGTTCTTC
GTCGCTCAGACCGTCGTCCTCGAGCAGGAGCTGCCCCTCTCGGACCTCCT
CGGCATCGCCGTGGGCCACCTGTACCACTACGCTAGCACGCGGAAACTCG
TCCGCCCGCCCTCCTTCTTGAGAGATATCTTCGCACAAGAGAAGCTTCGA
AAGCTCTACCGCAAGTTCGAGGATGACTTGCACTGACAGAAAGTAAAATA
ACACACAAGAGATGAATAAGGAGCCCCAGCGTTGGAGGCGGAAGGCAATA
CTACCAACAATTAACTACGTAATAACGTAATAGTAACAATTCGCACGTGC
ATAAGTTCCTTTTTCTTGTAGCTATCCTACAATCCTAGAACTATCGCATG
CACCCTTCACCACGTCACAGGATGACATACGAG

protein sequence of jgi.p|Nanoce1779_2|610079

>mRNA_10179-protein ID=mRNA_10179-protein|Name=jgi.p|Nanoce1779_2|610079|organism=Nannochloropsis oceanica|type=polypeptide|length=233bp
MMSLGAHHPNTALSVLLRSLPSLPHSLQAYLLTSLGLTGAAMLFNKNQWP
EWLLLDWSKVFTRLQLWRPLTSFLYFGTFGFNYLLSAHFMWTYMSHLEKL
KCKNPAEFVTMVAFGVAFLLAGSQVMGFQPHYLGHNLSCYLVYIWSRMFE
GQDVDVMGLFHLPAHLLPWFFVAQTVVLEQELPLSDLLGIAVGHLYHYAS
TRKLVRPPSFLRDIFAQEKLRKLYRKFEDDLH*

mRNA from alignment at scaffold_48:79272..81251+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10179 ID=mRNA_10179|Name=jgi.p|Nanoce1779_2|610079|organism=Nannochloropsis oceanica|type=mRNA|length=1980bp|location=Sequence derived from alignment at scaffold_48:79272..81251+ (Nannochloropsis oceanica)
CGTGACCGAGGAGGACTTTAATGTACGTGTGAGAGCGAGGCATAGGAAGA
GAAAGATATTTGGTATTATTAAAAATGAGTCAGACCCCTCCTCCAAAATC
AGTCCTTTTTTCGCCTTGGTTGATATTTTTCATAACCACCCCCCCCCCCT
CCCCCCTCCCTCCCTCGTCGTCCTCAGGATGGATCGTATGTCTCGAAGCT
CAAGAAGGAATACAGACGGACACCGCCCTTGACCAAGGTAAGGTGCAAGG
GAGGGAGGACGGGAGGGAGGACAAAAGAGGAAGGACAGCTGGATGATGTC
CCTCGGGGCTCACCACCCAAACACCGCTCTCTCCGTCCTCCTTCGCTCTC
TTCCCTCCCTCCCTCACTCACTGCAGGCCTACCTCCTCACCTCCCTGGGG
CTGACGGGTGCGGCGATGCTCTTTAACAAGAACCAGTGGCCTGAGTGGCT
CCTGCTCGACTGGAGCAAGGTCTTTACCAGGCTGCAGGTAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGAGAGAGAGAGAGGAATGAAAGCAGCTGACGC
CCGAGAGGTAGTATCTTCTGATAGGAGAGCGAGGACGTATCAATAATATA
GATCATTTCGATTGCTCTGACCACTTACGCCGCCTCCCTCCCTCCCTCCC
TCCCTTCCTCCCTCCCTCTCTTCCTCCCTAGCTATGGCGCCCCCTCACCT
CATTCCTGTACTTCGGTACCTTCGGCTTCAACTACCTGCTGTCCGCGCAC
TTTATGTGGACCTACATGTCCCATCTCGAGAAACTCAAGTGCAAGAATCC
GGCAGAGTTTGTGACTATGGTGCGTGCGCCCTCACCCCTCTCGCCCTTCC
TCCTTCCCTCCCTTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCGAC
GGCATCTGTAGACAGACACTCACCAGGAGCTCGCCTCCTCGTCCTCCTCC
CTCCCTCTCCCCCCCCTCTCCTCCCCTCTGGTCTCCTCGCAGGTGGCCTT
CGGCGTCGCATTCCTCCTGGCCGGGAGCCAAGTGATGGGCTTCCAACCGC
ACTACCTCGGCCACAACCTCAGCTGCTACCTGGTCTATATCTGGAGTCGG
ATGTTCGAAGGACAGGTTAGGAGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGAAAGTGTGGGAGAAGAGCGAGGGCGATGGGATGCGAAGTGGG
GTTTATTCTTATCTTACCTTTGTATCACCCTCTATTCATTCTCATCTTAC
TTTCATATTACCTTTTACTCATTCTTATCTTACCTGTGCTATCTTCCATC
CAACATTCTCATCATACTTCCACATGAACCTCTTTCCACTCTCATCTTAC
TCCGATACTGCCCTCCATATTTCGATCGACGCAGGACGTGGACGTGATGG
GTCTATTCCATCTCCCCGCACACCTCCTTCCCTGGTTCTTCGTCGCTCAG
GTGCGTTGCGTGTTCCCTCCCTCCCTTCCTCCCTCCCTCCGTCCCTGTTG
CTACCACATTGGTCGACTTAAATCTTCATGCGCATTCCCAGGTACATCGC
CACACCACACAATTACCCACCGCCTCCCTTCCTCCCTCCCTCCCTCCCTC
CCTCAGACCGTCGTCCTCGAGCAGGAGCTGCCCCTCTCGGACCTCCTCGG
CATCGCCGTGGGCCACCTGTACCACTACGCTAGCACGCGGAAACTCGTCC
GCCCGCCCTCCTTCTTGAGAGATATCTTCGCACAAGAGAAGCTTCGAAAG
CTCTACCGCAAGTTCGAGGATGACTTGCACTGACAGAAAGTAAAATAACA
CACAAGAGATGAATAAGGAGCCCCAGCGTTGGAGGCGGAAGGCAATACTA
CCAACAATTAACTACGTAATAACGTAATAGTAACAATTCGCACGTGCATA
AGTTCCTTTTTCTTGTAGCTATCCTACAATCCTAGAACTATCGCATGCAC
CCTTCACCACGTCACAGGATGACATACGAG

Coding sequence (CDS) from alignment at scaffold_48:79272..81251+

>mRNA_10179 ID=mRNA_10179|Name=jgi.p|Nanoce1779_2|610079|organism=Nannochloropsis oceanica|type=CDS|length=3495bp|location=Sequence derived from alignment at scaffold_48:79272..81251+ (Nannochloropsis oceanica)
ATGATGTCCCTCGGGGCTCACCACCCAAACACCGCTCTCTCCGTCCTCCT
TCGCTCTCTTCCCTCCCTCCCTCACTCACTGCAGGCCTACCTCCTCACCT
CCCTGGGGCTGACGGGTGCGGCGATGCTCTTTAACAAGAACCAGTGGCCT
GAGTGGCTCCTGCTCGACTGGAGCAAGGTCTTTACCAGGCTGCAGCTATG
GCGCCCCCTCACCTCATTCCTGTACTTCGGTACCTTCGGCTTCAACTACC
TGCTGTCCGCGCACTTTATGTGGACCTACATGTCCCATCTCGAGAAACTC
AAGTGCAAGAATCCGGCAGAGTTTGTGACTATGGTGGCCTTCGGCGTCGC
ATTCCTCCTGGCCGGGAGCCAAGTGATGGGCTTCCAACCGCACTACCTCG
GCCACAACCTCAGCTGCTACCTGGTCTATATCTGGAGTCGGATGTTCGAA
GGACAGGACGTGGACGTGATGGGTCTATTCCATCTCCCCGCACACCTCCT
TCCCTGGTTCTTCGTCGCTCAGACCGTCGTCCTCGAGCAGGAGCTGCCCC
TCTCGGACCTCCTCGGCATCGCCGTGGGCCACCTGTACCACTACGCTAGC
ACGCGGAAACTCGTCCGCCCGCCCTCCTTCTTGAGAGATATCTTCGCACA
AGAGAAGCTTCGAAAGCTCTACCGCAAGTTCGAGGATGACTTGCACTGAA
TGATGTCCCTCGGGGCTCACCACCCAAACACCGCTCTCTCCGTCCTCCTT
CGCTCTCTTCCCTCCCTCCCTCACTCACTGCAGGCCTACCTCCTCACCTC
CCTGGGGCTGACGGGTGCGGCGATGCTCTTTAACAAGAACCAGTGGCCTG
AGTGGCTCCTGCTCGACTGGAGCAAGGTCTTTACCAGGCTGCAGCTATGG
CGCCCCCTCACCTCATTCCTGTACTTCGGTACCTTCGGCTTCAACTACCT
GCTGTCCGCGCACTTTATGTGGACCTACATGTCCCATCTCGAGAAACTCA
AGTGCAAGAATCCGGCAGAGTTTGTGACTATGGTGGCCTTCGGCGTCGCA
TTCCTCCTGGCCGGGAGCCAAGTGATGGGCTTCCAACCGCACTACCTCGG
CCACAACCTCAGCTGCTACCTGGTCTATATCTGGAGTCGGATGTTCGAAG
GACAGGACGTGGACGTGATGGGTCTATTCCATCTCCCCGCACACCTCCTT
CCCTGGTTCTTCGTCGCTCAGACCGTCGTCCTCGAGCAGGAGCTGCCCCT
CTCGGACCTCCTCGGCATCGCCGTGGGCCACCTGTACCACTACGCTAGCA
CGCGGAAACTCGTCCGCCCGCCCTCCTTCTTGAGAGATATCTTCGCACAA
GAGAAGCTTCGAAAGCTCTACCGCAAGTTCGAGGATGACTTGCACTGAAT
GATGTCCCTCGGGGCTCACCACCCAAACACCGCTCTCTCCGTCCTCCTTC
GCTCTCTTCCCTCCCTCCCTCACTCACTGCAGGCCTACCTCCTCACCTCC
CTGGGGCTGACGGGTGCGGCGATGCTCTTTAACAAGAACCAGTGGCCTGA
GTGGCTCCTGCTCGACTGGAGCAAGGTCTTTACCAGGCTGCAGCTATGGC
GCCCCCTCACCTCATTCCTGTACTTCGGTACCTTCGGCTTCAACTACCTG
CTGTCCGCGCACTTTATGTGGACCTACATGTCCCATCTCGAGAAACTCAA
GTGCAAGAATCCGGCAGAGTTTGTGACTATGGTGGCCTTCGGCGTCGCAT
TCCTCCTGGCCGGGAGCCAAGTGATGGGCTTCCAACCGCACTACCTCGGC
CACAACCTCAGCTGCTACCTGGTCTATATCTGGAGTCGGATGTTCGAAGG
ACAGGACGTGGACGTGATGGGTCTATTCCATCTCCCCGCACACCTCCTTC
CCTGGTTCTTCGTCGCTCAGACCGTCGTCCTCGAGCAGGAGCTGCCCCTC
TCGGACCTCCTCGGCATCGCCGTGGGCCACCTGTACCACTACGCTAGCAC
GCGGAAACTCGTCCGCCCGCCCTCCTTCTTGAGAGATATCTTCGCACAAG
AGAAGCTTCGAAAGCTCTACCGCAAGTTCGAGGATGACTTGCACTGAATG
ATGTCCCTCGGGGCTCACCACCCAAACACCGCTCTCTCCGTCCTCCTTCG
CTCTCTTCCCTCCCTCCCTCACTCACTGCAGGCCTACCTCCTCACCTCCC
TGGGGCTGACGGGTGCGGCGATGCTCTTTAACAAGAACCAGTGGCCTGAG
TGGCTCCTGCTCGACTGGAGCAAGGTCTTTACCAGGCTGCAGCTATGGCG
CCCCCTCACCTCATTCCTGTACTTCGGTACCTTCGGCTTCAACTACCTGC
TGTCCGCGCACTTTATGTGGACCTACATGTCCCATCTCGAGAAACTCAAG
TGCAAGAATCCGGCAGAGTTTGTGACTATGGTGGCCTTCGGCGTCGCATT
CCTCCTGGCCGGGAGCCAAGTGATGGGCTTCCAACCGCACTACCTCGGCC
ACAACCTCAGCTGCTACCTGGTCTATATCTGGAGTCGGATGTTCGAAGGA
CAGGACGTGGACGTGATGGGTCTATTCCATCTCCCCGCACACCTCCTTCC
CTGGTTCTTCGTCGCTCAGACCGTCGTCCTCGAGCAGGAGCTGCCCCTCT
CGGACCTCCTCGGCATCGCCGTGGGCCACCTGTACCACTACGCTAGCACG
CGGAAACTCGTCCGCCCGCCCTCCTTCTTGAGAGATATCTTCGCACAAGA
GAAGCTTCGAAAGCTCTACCGCAAGTTCGAGGATGACTTGCACTGAATGA
TGTCCCTCGGGGCTCACCACCCAAACACCGCTCTCTCCGTCCTCCTTCGC
TCTCTTCCCTCCCTCCCTCACTCACTGCAGGCCTACCTCCTCACCTCCCT
GGGGCTGACGGGTGCGGCGATGCTCTTTAACAAGAACCAGTGGCCTGAGT
GGCTCCTGCTCGACTGGAGCAAGGTCTTTACCAGGCTGCAGCTATGGCGC
CCCCTCACCTCATTCCTGTACTTCGGTACCTTCGGCTTCAACTACCTGCT
GTCCGCGCACTTTATGTGGACCTACATGTCCCATCTCGAGAAACTCAAGT
GCAAGAATCCGGCAGAGTTTGTGACTATGGTGGCCTTCGGCGTCGCATTC
CTCCTGGCCGGGAGCCAAGTGATGGGCTTCCAACCGCACTACCTCGGCCA
CAACCTCAGCTGCTACCTGGTCTATATCTGGAGTCGGATGTTCGAAGGAC
AGGACGTGGACGTGATGGGTCTATTCCATCTCCCCGCACACCTCCTTCCC
TGGTTCTTCGTCGCTCAGACCGTCGTCCTCGAGCAGGAGCTGCCCCTCTC
GGACCTCCTCGGCATCGCCGTGGGCCACCTGTACCACTACGCTAGCACGC
GGAAACTCGTCCGCCCGCCCTCCTTCTTGAGAGATATCTTCGCACAAGAG
AAGCTTCGAAAGCTCTACCGCAAGTTCGAGGATGACTTGCACTGA

Synonyms

Publications