jgi.p|Nanoce1779_2|674602, mRNA_10178 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|674602
Unique Name	mRNA_10178
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2134
Alignment location	scaffold_48:76527..79294 -

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Properties


Property Name	Value
TranscriptId	674688
Track	FilteredModels2
ProteinId	674602

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_48	supercontig	scaffold_48:76527..79294 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|674602	gene_10178	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|674602	mRNA_10178-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10178	CDS_10178	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_48:76527..79294-
coding sequence from alignment at scaffold_48:76527..79294-

mRNA sequence

>mRNA_10178 ID=mRNA_10178|Name=jgi.p|Nanoce1779_2|674602|organism=Nannochloropsis oceanica|type=mRNA|length=2134bp
CATTAAAGTCCTCCTCGGTCACGCCCTCATCCTCCTCCTCCTCCTCTTCT
TCTTCTTCTTCCTCCTCCTCCTCCTCCTCCTCCAGAGCCTCATCATCTTC
CTCGTCCTCTTCTAGTAGACTCTGTTTCTTCTTGGCCGCAGCAGCAGCGC
TCGCTCCTCCCCTTCTCCGCATCAAACGCGAGAGGAAGGGGCTCGCTCCC
TCCCCCTTGCGCGTTATGAAGGTCAGCGTGGTAGTAGGTGCTCTCTTAAA
GCCATCTCTTCTCCTCGTCGTGACCCTTTTCGTAGTACTTGTCGCTGTGA
CGACGCTGTGGCTGTATGCAGAGTTGGTGGTGGCTGGAAGGAGGAGAAGC
AGGATGATGGGCACCAGGCTACAGAGGAGGCGTCTCGATCCTCCTGCTGT
TCGTGCTGCGGGCGCTGTCATGGCACCCTTGGTCGATTGGCAGGACGTAC
AGCGAGACTGGAAGGTGGATAGTGTGCCTGGTGTTGTGAGTAGGGCGTAT
GGTCAATCAGACGGTGATTAAGGCATGTGTAGGGCCTGTCCTCAATGCAT
GTGAGGTTGAGGGGCGTCCTCGATCGGCAGACAGCACCAAGCAACGGCTG
GCTTCATTCGCATCTGCGGCAGCACCTGCTCTGTGCGCATTTGCTTTACG
CCCGGCGCCACACACTTTCCTTCTCACGAATTCTGCATGTACTAATCGTT
GTCATCACTCTCTTCCTGTCCACGTCCCCTCACCACGTCGCAACCCATAG
GGCAAGTCTGCCTCGCCTCCCCCACCAAAGCACCCCCGTCTCCACTTTAC
TTCCCCGGCAAGCAGGCATGTACGCCTCGGGCATGGTATTCGCGGGCGTC
AATGGCGGATCGGGCAGTGCCTGGCCATCCGGGGCTACATCGGACGCGTG
GGATGACAGTGCCATCCTAAAGGCATTCGATCAGGCCGTCTCCAGCCATG
GGCCAGTCGGAGGACGGCAAAGAGACAAACGACCGCGGCAGCAGCTGTCC
ACGGAAGGAAGGGGAGAAGGAGGAGTAGCGGGCATGCAGCAGGGGGCACA
ACAGCCAAAGCGGCGCTTCTCACACACCATGTCCCAAAGAAGAGGAGGAG
GGGGAGGAGGGGGAGGAGGGGGAGGAGGAGTGTCGTCGGTAGAGGATCAT
TTTTTCAGTCTGCTGCAGGCCGGAGAGGAGAGGAAACGTAACGAGGCCTG
GGGAGGGCAGAAGGATGATAGACAGAATGTGAAGGGGGAGGAGAAGGAGG
AGGAGAGAGAGGAGGGACAGCTTTCTCCTTACAGCGCACAGCATCTGGGC
GGAGGCGGGGAGAAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGGAGAGGA
CCTAGTGACCATGCACGGGCAGCTGCTTCGAGGGATGCTGAGAGGGAGGG
AGGGAGGGAGGGAGGAAGGGAAGGAGGGAGAGGAGGAGGACGTGGAAGAG
GCGGCGGCATTGTCGGATTTGATGGCAGCGTGGTATCACAGCGGGTATTA
CACGGGCCGGTATCGGGCGATACAGGAGATGAAGAAACAGCAGCGACAGC
AGCACCAGGAGCACCAGCAGCCATCCTGGCGTCCTTTGCATTAGCCTCAC
TTGAGCACAGGGGCTTGCAACAGGCGCGAGGGCAAAACACGGCCATCCCC
GATCCCTGGAGGGAAGGAGGAACAACACGACAGCCCACAAGCGGAGAGGG
AGGAGGGACAGGTGTAACAGGTGCTCTGCTCGTCTTTTGAGCGGCAAGGG
GGCAAAGATTTTTGAGGGGTTTGGGCTTTTTGAGGAATTGAGTGGTGAAC
GGAGCCTTTAATGGTGAGATAGATCCAGAAGGCATTTGGGCACGTCTTTA
GAGCGGCAAGGGGGCAAAGATTTTTGAGGGGTTTGGGCTTTTTGAGGAAT
TGAGTGGTGAACGGAGCCTCTAATGGTGAGATAGATCCAGAAGGCATTTG
GGCAAGGAGGGGAGGCGCGGGCGACGCAGGTCAGCAAGCGAGGACGATGG
AGCGGTGAGGTCTTTGGAAGACGAAGAAGGGAAAGAAGTAGAGGCGTCAA
GAACAAGGAAAGAAAGTAATAGTAGAGGCATAAACAAGAAGGAAAGAAAG
TGATAAAAGAAAAAAGAGAAGCAGCTGCCTGCAG

protein sequence of jgi.p|Nanoce1779_2|674602

>mRNA_10178-protein ID=mRNA_10178-protein|Name=jgi.p|Nanoce1779_2|674602|organism=Nannochloropsis oceanica|type=polypeptide|length=350bp
MHVRLRGVLDRQTAPSNGWLHSHLRQHLLCAHLLYARRHTLSFSRILHVL
IVVITLFLSTSPHHVATHRASLPRLPHQSTPVSTLLPRQAGMYASGMVFA
GVNGGSGSAWPSGATSDAWDDSAILKAFDQAVSSHGPVGGRQRDKRPRQQ
LSTEGRGEGGVAGMQQGAQQPKRRFSHTMSQRRGGGGGGGGGGGGVSSVE
DHFFSLLQAGEERKRNEAWGGQKDDRQNVKGEEKEEEREEGQLSPYSAQH
LGGGGEKEEEEEEEEEGEDLVTMHGQLLRGMLRGREGGREEGKEGEEEDV
EEAAALSDLMAAWYHSGYYTGRYRAIQEMKKQQRQQHQEHQQPSWRPLH*

mRNA from alignment at scaffold_48:76527..79294-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10178 ID=mRNA_10178|Name=jgi.p|Nanoce1779_2|674602|organism=Nannochloropsis oceanica|type=mRNA|length=2768bp|location=Sequence derived from alignment at scaffold_48:76527..79294- (Nannochloropsis oceanica)
CATTAAAGTCCTCCTCGGTCACGCCCTCATCCTCCTCCTCCTCCTCTTCT
TCTTCTTCTTCCTCCTCCTCCTCCTCCTCCTCCAGAGCCTCATCATCTTC
CTCGTCCTCTTCTAGTAGACTCTGTTTCTTCTTGGCCGCAGCAGCAGCGC
TCGCTCCTCCCCTTCTCCGCATCAAACGCGAGAGGAAGGGGCTCGCTCCC
TCCCCCTTGCGCGTTATGAAGGTCAGCGTGGTAGTAGGTGCTCTCTTAAA
GCCATCTCTTCTCCTCGTCGTGACCCTTTTCGTAGTACTTGTCGCTGTGA
CGACGCTGTGGCTGTATGCAGAGTTGGTGGTGGCTGGAAGGAGGAGAAGC
AGGATGATGGGCACCAGGCTACAGAGGAGGCGTCTCGATCCTCCTGCTGT
TCGTGCTGCGGGCGCTGTCATGGCACCCTTGGTCGATTGGCAGGACGTAC
AGCGAGACTGGAAGGTGGATAGTGTGCCTGGTGTTGTGAGTAGGGCGTAT
GGTCAATCAGACGGTGATTAAGGCATGTGTAGGGCCTGTCCTCAATGCAT
GTGAGGTTGAGGGGCGTCCTCGATCGGCAGACAGCACCAAGCAACGGCTG
GCTTCATTCGCATCTGCGGCAGCACCTGCTCTGTGCGCATTTGCTTTACG
CCCGGCGCCACACACTTTCCTTCTCACGAATTCTGCATGTACTAATCGTT
GTCATCACTCTCTTCCTGTCCACGTCCCCTCACCACGTCGCAACCCATAG
GGCAAGTCTGCCTCGCCTCCCCCACCAAAGCACCCCCGTCTCCACTTTAC
TTCCCCGGCAAGCAGGCATGTACGCCTCGGGCATGGTATTCGCGGGCGTC
AATGGCGGATCGGGCAGTGCCTGGCCATCCGGGGCTACATCGGACGCGTG
GGATGACAGTGCCATCCTAAAGGTATGTCGGGTTGGAAGGAGGGACGACG
AGAGGAGGGGAGGTCGACAGGGAGGACCTTCCACTTCACTATTCGCACGT
GCTGGTCCTTGAAGAGGGAGGACAGTGCTGCTTTTAACGTCAAGAGAAGA
AAAGTGATGAGGTCAAGTTTTGAACGGAAAAGAGCCGCCCTCAAGAGTGT
CACCTCTGCACGCATCCACCCACCCTCACAGGCATTCGATCAGGCCGTCT
CCAGCCATGGGCCAGTCGGAGGACGGCAAAGAGACAAACGACCGCGGCAG
CAGCTGTCCACGGAAGGAAGGGGAGAAGGAGGAGTAGCGGGCATGCAGCA
GGGGGCACAACAGCCAAAGCGGCGCTTCTCACACACCATGTCCCAAAGAA
GAGGAGGAGGGGGAGGAGGGGGAGGAGGGGGAGGAGGAGTGTCGTCGGTA
GAGGATCATTTTTTCAGTCTGCTGCAGGCCGGAGAGGAGAGGAAACGTAA
CGAGGCCTGGGGAGGGCAGAAGGATGATAGACAGAATGTGAAGGGGGAGG
AGAAGGAGGAGGAGAGAGAGGAGGGACAGCTTTCTCCTTACAGCGCACAG
CATCTGGGCGGAGGCGGGGAGAAGGAGGAGGAGGAGGAGGAAGAAGAAGA
AGGAGAGGTGCACGAGCGAAACGGAATGCCAGGACCCAAGCAGCAGCCGC
AGCAACAGTATCAATACAAACAGCAGGAAGGAAGACAAAACGGAGCATAT
CCGTATTCCTCTTACCCTCCCCCTTCTTCCGTCCCTCCTCCTCCATCATC
ATCACGGCCTTCCACCTGCTCGCCCCATCCCCTTCGCAGCTCTTCTCCCT
ATGCCCATGTGGCAGTGGCAGGAGGAGACGACACCCTTCCTCCCTCCTTC
CCTCACCCGTCTCCTGCACACCAGGACCTAGTGACCATGCACGGGCAGCT
GCTTCGAGGGATGCTGAGAGGGAGGGAGGGAGGGAGGGAGGAAGGGAAGG
AGGGAGAGGAGGAGGACGTGGAAGAGGCGGCGGCATTGTCGGATTTGATG
GCAGCGTGGTATCACAGGTGAGGACGGGAGAGGAAGGGAGTTGAAGAGGA
GGGAGGGAGGGAGGGAGGGAGGGAGAGAGAGAGAAAGGGGGGAGGGAGGG
AGGACAGGAAGAAATCTTCTGATCGATTCCATGTATTAAGTTACAGCTCC
TTCTTTTTCCCTTGTCCCTCTCTAGCGGGTATTACACGGGCCGGTATCGG
GCGATACAGGAGATGAAGAAACAGCAGCGACAGCAGCACCAGGAGCACCA
GCAGCCATCCTGGCGTCCTTTGCATTAGCCTCACTTGAGCACAGGGGCTT
GCAACAGGCGCGAGGGCAAAACACGGCCATCCCCGATCCCTGGAGGGAAG
GAGGAACAACACGACAGCCCACAAGCGGAGAGGGAGGAGGGACAGGTGTA
ACAGGTGCTCTGCTCGTCTTTTGAGCGGCAAGGGGGCAAAGATTTTTGAG
GGGTTTGGGCTTTTTGAGGAATTGAGTGGTGAACGGAGCCTTTAATGGTG
AGATAGATCCAGAAGGCATTTGGGCACGTCTTTAGAGCGGCAAGGGGGCA
AAGATTTTTGAGGGGTTTGGGCTTTTTGAGGAATTGAGTGGTGAACGGAG
CCTCTAATGGTGAGATAGATCCAGAAGGCATTTGGGCAAGGAGGGGAGGC
GCGGGCGACGCAGGTCAGCAAGCGAGGACGATGGAGCGGTGAGGTCTTTG
GAAGACGAAGAAGGGAAAGAAGTAGAGGCGTCAAGAACAAGGAAAGAAAG
TAATAGTAGAGGCATAAACAAGAAGGAAAGAAAGTGATAAAAGAAAAAAG
AGAAGCAGCTGCCTGCAG

Coding sequence (CDS) from alignment at scaffold_48:76527..79294-

>mRNA_10178 ID=mRNA_10178|Name=jgi.p|Nanoce1779_2|674602|organism=Nannochloropsis oceanica|type=CDS|length=4200bp|location=Sequence derived from alignment at scaffold_48:76527..79294- (Nannochloropsis oceanica)
CGGGTATTACACGGGCCGGTATCGGGCGATACAGGAGATGAAGAAACAGC
AGCGACAGCAGCACCAGGAGCACCAGCAGCCATCCTGGCGTCCTTTGCAT
TAGGACCTAGTGACCATGCACGGGCAGCTGCTTCGAGGGATGCTGAGAGG
GAGGGAGGGAGGGAGGGAGGAAGGGAAGGAGGGAGAGGAGGAGGACGTGG
AAGAGGCGGCGGCATTGTCGGATTTGATGGCAGCGTGGTATCACAGGCAT
TCGATCAGGCCGTCTCCAGCCATGGGCCAGTCGGAGGACGGCAAAGAGAC
AAACGACCGCGGCAGCAGCTGTCCACGGAAGGAAGGGGAGAAGGAGGAGT
AGCGGGCATGCAGCAGGGGGCACAACAGCCAAAGCGGCGCTTCTCACACA
CCATGTCCCAAAGAAGAGGAGGAGGGGGAGGAGGGGGAGGAGGGGGAGGA
GGAGTGTCGTCGGTAGAGGATCATTTTTTCAGTCTGCTGCAGGCCGGAGA
GGAGAGGAAACGTAACGAGGCCTGGGGAGGGCAGAAGGATGATAGACAGA
ATGTGAAGGGGGAGGAGAAGGAGGAGGAGAGAGAGGAGGGACAGCTTTCT
CCTTACAGCGCACAGCATCTGGGCGGAGGCGGGGAGAAGGAGGAGGAGGA
GGAGGAAGAAGAAGAAGGAGAGATGCATGTGAGGTTGAGGGGCGTCCTCG
ATCGGCAGACAGCACCAAGCAACGGCTGGCTTCATTCGCATCTGCGGCAG
CACCTGCTCTGTGCGCATTTGCTTTACGCCCGGCGCCACACACTTTCCTT
CTCACGAATTCTGCATGTACTAATCGTTGTCATCACTCTCTTCCTGTCCA
CGTCCCCTCACCACGTCGCAACCCATAGGGCAAGTCTGCCTCGCCTCCCC
CACCAAAGCACCCCCGTCTCCACTTTACTTCCCCGGCAAGCAGGCATGTA
CGCCTCGGGCATGGTATTCGCGGGCGTCAATGGCGGATCGGGCAGTGCCT
GGCCATCCGGGGCTACATCGGACGCGTGGGATGACAGTGCCATCCTAAAG
CGGGTATTACACGGGCCGGTATCGGGCGATACAGGAGATGAAGAAACAGC
AGCGACAGCAGCACCAGGAGCACCAGCAGCCATCCTGGCGTCCTTTGCAT
TAGGACCTAGTGACCATGCACGGGCAGCTGCTTCGAGGGATGCTGAGAGG
GAGGGAGGGAGGGAGGGAGGAAGGGAAGGAGGGAGAGGAGGAGGACGTGG
AAGAGGCGGCGGCATTGTCGGATTTGATGGCAGCGTGGTATCACAGGCAT
TCGATCAGGCCGTCTCCAGCCATGGGCCAGTCGGAGGACGGCAAAGAGAC
AAACGACCGCGGCAGCAGCTGTCCACGGAAGGAAGGGGAGAAGGAGGAGT
AGCGGGCATGCAGCAGGGGGCACAACAGCCAAAGCGGCGCTTCTCACACA
CCATGTCCCAAAGAAGAGGAGGAGGGGGAGGAGGGGGAGGAGGGGGAGGA
GGAGTGTCGTCGGTAGAGGATCATTTTTTCAGTCTGCTGCAGGCCGGAGA
GGAGAGGAAACGTAACGAGGCCTGGGGAGGGCAGAAGGATGATAGACAGA
ATGTGAAGGGGGAGGAGAAGGAGGAGGAGAGAGAGGAGGGACAGCTTTCT
CCTTACAGCGCACAGCATCTGGGCGGAGGCGGGGAGAAGGAGGAGGAGGA
GGAGGAAGAAGAAGAAGGAGAGATGCATGTGAGGTTGAGGGGCGTCCTCG
ATCGGCAGACAGCACCAAGCAACGGCTGGCTTCATTCGCATCTGCGGCAG
CACCTGCTCTGTGCGCATTTGCTTTACGCCCGGCGCCACACACTTTCCTT
CTCACGAATTCTGCATGTACTAATCGTTGTCATCACTCTCTTCCTGTCCA
CGTCCCCTCACCACGTCGCAACCCATAGGGCAAGTCTGCCTCGCCTCCCC
CACCAAAGCACCCCCGTCTCCACTTTACTTCCCCGGCAAGCAGGCATGTA
CGCCTCGGGCATGGTATTCGCGGGCGTCAATGGCGGATCGGGCAGTGCCT
GGCCATCCGGGGCTACATCGGACGCGTGGGATGACAGTGCCATCCTAAAG
CGGGTATTACACGGGCCGGTATCGGGCGATACAGGAGATGAAGAAACAGC
AGCGACAGCAGCACCAGGAGCACCAGCAGCCATCCTGGCGTCCTTTGCAT
TAGGACCTAGTGACCATGCACGGGCAGCTGCTTCGAGGGATGCTGAGAGG
GAGGGAGGGAGGGAGGGAGGAAGGGAAGGAGGGAGAGGAGGAGGACGTGG
AAGAGGCGGCGGCATTGTCGGATTTGATGGCAGCGTGGTATCACAGGCAT
TCGATCAGGCCGTCTCCAGCCATGGGCCAGTCGGAGGACGGCAAAGAGAC
AAACGACCGCGGCAGCAGCTGTCCACGGAAGGAAGGGGAGAAGGAGGAGT
AGCGGGCATGCAGCAGGGGGCACAACAGCCAAAGCGGCGCTTCTCACACA
CCATGTCCCAAAGAAGAGGAGGAGGGGGAGGAGGGGGAGGAGGGGGAGGA
GGAGTGTCGTCGGTAGAGGATCATTTTTTCAGTCTGCTGCAGGCCGGAGA
GGAGAGGAAACGTAACGAGGCCTGGGGAGGGCAGAAGGATGATAGACAGA
ATGTGAAGGGGGAGGAGAAGGAGGAGGAGAGAGAGGAGGGACAGCTTTCT
CCTTACAGCGCACAGCATCTGGGCGGAGGCGGGGAGAAGGAGGAGGAGGA
GGAGGAAGAAGAAGAAGGAGAGATGCATGTGAGGTTGAGGGGCGTCCTCG
ATCGGCAGACAGCACCAAGCAACGGCTGGCTTCATTCGCATCTGCGGCAG
CACCTGCTCTGTGCGCATTTGCTTTACGCCCGGCGCCACACACTTTCCTT
CTCACGAATTCTGCATGTACTAATCGTTGTCATCACTCTCTTCCTGTCCA
CGTCCCCTCACCACGTCGCAACCCATAGGGCAAGTCTGCCTCGCCTCCCC
CACCAAAGCACCCCCGTCTCCACTTTACTTCCCCGGCAAGCAGGCATGTA
CGCCTCGGGCATGGTATTCGCGGGCGTCAATGGCGGATCGGGCAGTGCCT
GGCCATCCGGGGCTACATCGGACGCGTGGGATGACAGTGCCATCCTAAAG
CGGGTATTACACGGGCCGGTATCGGGCGATACAGGAGATGAAGAAACAGC
AGCGACAGCAGCACCAGGAGCACCAGCAGCCATCCTGGCGTCCTTTGCAT
TAGGACCTAGTGACCATGCACGGGCAGCTGCTTCGAGGGATGCTGAGAGG
GAGGGAGGGAGGGAGGGAGGAAGGGAAGGAGGGAGAGGAGGAGGACGTGG
AAGAGGCGGCGGCATTGTCGGATTTGATGGCAGCGTGGTATCACAGGCAT
TCGATCAGGCCGTCTCCAGCCATGGGCCAGTCGGAGGACGGCAAAGAGAC
AAACGACCGCGGCAGCAGCTGTCCACGGAAGGAAGGGGAGAAGGAGGAGT
AGCGGGCATGCAGCAGGGGGCACAACAGCCAAAGCGGCGCTTCTCACACA
CCATGTCCCAAAGAAGAGGAGGAGGGGGAGGAGGGGGAGGAGGGGGAGGA
GGAGTGTCGTCGGTAGAGGATCATTTTTTCAGTCTGCTGCAGGCCGGAGA
GGAGAGGAAACGTAACGAGGCCTGGGGAGGGCAGAAGGATGATAGACAGA
ATGTGAAGGGGGAGGAGAAGGAGGAGGAGAGAGAGGAGGGACAGCTTTCT
CCTTACAGCGCACAGCATCTGGGCGGAGGCGGGGAGAAGGAGGAGGAGGA
GGAGGAAGAAGAAGAAGGAGAGATGCATGTGAGGTTGAGGGGCGTCCTCG
ATCGGCAGACAGCACCAAGCAACGGCTGGCTTCATTCGCATCTGCGGCAG
CACCTGCTCTGTGCGCATTTGCTTTACGCCCGGCGCCACACACTTTCCTT
CTCACGAATTCTGCATGTACTAATCGTTGTCATCACTCTCTTCCTGTCCA
CGTCCCCTCACCACGTCGCAACCCATAGGGCAAGTCTGCCTCGCCTCCCC
CACCAAAGCACCCCCGTCTCCACTTTACTTCCCCGGCAAGCAGGCATGTA
CGCCTCGGGCATGGTATTCGCGGGCGTCAATGGCGGATCGGGCAGTGCCT
GGCCATCCGGGGCTACATCGGACGCGTGGGATGACAGTGCCATCCTAAAG

Synonyms

Publications