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Properties
| Property Name | Value |
|---|
| TranscriptId | 610120 |
| Track | FilteredModels2 |
| ProteinId | 610034 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_48 | supercontig | scaffold_48:46658..48530 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10173 ID=mRNA_10173|Name=jgi.p|Nanoce1779_2|610034|organism=Nannochloropsis oceanica|type=mRNA|length=1765bp
CACCGAGACTTGACCTCCAGCAACACAAAAGCATCAGGTGTCGATCCAGA
GAGGACGTAATCTGCCATGGTCGCTTCCTTAGGGAGCTCCTTGGCACGCC
GCACCGTCACGCGTAGACGGGCGGCAAAGTTCCGACGCACGGTTTCCTGC
GGCAGACCCAAGCGCGTTCCACCCTGCACGTTGTACCAGGTGGAGATGTT
GGGGGCGCCATAGACTGAGAAGGCAAACGACGCAGTTTTCACAGCCTTCT
CTATGTCAAAAACAGCATTTTGGAGCAAATCCGAGAGCTTGGAGGGACCT
TTTTCTTGCACGGGAGACGCCATGGCTTGTGAAGCTTGCGGATCGGGTGC
TAGTAGGAAGGCGACAGGGTCGGCTGAGGATGCTTTGAGTCCTGTAGAGT
AAGAGTCGTGTTGAAGTGTAGAAATGGGCTGAGGCTTTAGGTGGGAGGGG
TCCTGGGAGCGGGTGAATTCACCTCTAAAAGCTGCTGCTGTGGGTTATAC
TATGCATTTCCTGTGTATGGCTGTGTAAACCATGGTGTAAATTTAAAAAG
CCGATCGATCGGTCGCGGTAATGATGGCCATCTCTGCAAACTAAAACGGA
TCTTGTGGTCTCAATATGGAAAAAAAAAGGTTTCTCGACGACAAGGCGAG
GCAAGCAACTATTGTAACCACATTTCCGGTGATGGAAAAGGTATTCAATG
CTTTTCTGCGCCATTATACTTATTTGTTTATCTTTTCTTGGTACATGGAT
CAGGTCTCGCGAACGCCTCGGTCCCCCTGCTCTCTCCTCTCACACCACCG
ACTCCGCATTAGCAATCTCGGAGCTAGTGGAGGGACAACCACAAATCGTT
CGGCAAGGGCAGCAGAGAATAACCACAATAACATCCATGACTGCTGACAG
AAGCTTGCAGGGAAAGCACAGCACGTCGGAAATGATGCCCATCTTGCTTG
GGGTTGGTGCGGTCTGGGGGTGGGAGTGGGGCTGCTGGCTCGGTCTGCTC
GTGCAGAGGAAAGGAATGCAGGGGAAAGAAGTGTTACTGTATTTCAGTGC
CGATGTAGCGAGGCTCGACATGAATGAAACACACAACAAGTACCATATGC
TGCGTGAATAAGATAGAATCTAGAATACTGAACTTACGGAACATGTACAT
TTTTTGGGAGTGAGGGGTCGTTGAAATTTCTTTGGGACATGGGCCATTTT
TCAGCCTCATATACATCGAACTATCATATAATTTATAAAGTTTTGAATTA
GCTTTACTGGCCATCAACACGTCAAAAGGAGGGCGTTGTGGATGGCTTGG
AGGAAAAGAAATCATAGAGCGGGTCCTGATCGCTTTCATGTAACCTCCCC
GCTTTCCCCACTTCCCATTACAACGCTCCCCCTTTGGAGAGTGAGAGCAC
GTGGACAGGCAGGGCGGAAAGGAGAATGCTATGAATTGAGGTTGGCATGC
AAACCATGGGAAAATGAAGAAAGAAAGGTGGGAAAAGACACGGAGGAGAG
AGAGACGACACAGAGGAAATTCCTATTTCTTCACAGACTTCTTCCGGGAC
GTGCTTTTCCAAACTCTTTTCCGTCCTCCCATCTCTCCTGCTATTACTCG
TCGCCCACTTCATATTCATCGGTTCCCTGCATCCTTATGGCCAGCAATGT
ACAGTACCTTGTCAGCTAGTTAACCAACAACCACTACACCACACACACAG
ACGAAGTAGAAAAAGGAGGAGGGGCTGAGCAGAAACTCCCCCAGTCGTCT
CTCTCCCTTCTCATT back to topprotein sequence of jgi.p|Nanoce1779_2|610034 >mRNA_10173-protein ID=mRNA_10173-protein|Name=jgi.p|Nanoce1779_2|610034|organism=Nannochloropsis oceanica|type=polypeptide|length=138bp
MLFCAIILICLSFLGTWIRSRERLGPPALSSHTTDSALAISELVEGQPQI
VRQGQQRITTITSMTADRSLQGKHSTSEMMPILLGVGAVWGWEWGCWLGL
LVQRKGMQGKEVLLYFSADVARLDMNETHNKYHMLRE* back to topmRNA from alignment at scaffold_48:46658..48530+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10173 ID=mRNA_10173|Name=jgi.p|Nanoce1779_2|610034|organism=Nannochloropsis oceanica|type=mRNA|length=1873bp|location=Sequence derived from alignment at scaffold_48:46658..48530+ (Nannochloropsis oceanica)
CACCGAGACTTGACCTCCAGCAACACAAAAGCATCAGGTGTCGATCCAGA
GAGGACGTAATCTGCCATGGTCGCTTCCTTAGGGAGCTCCTTGGCACGCC
GCACCGTCACGCGTAGACGGGCGGCAAAGTTCCGACGCACGGTTTCCTGA
GGGAGAGAGCGAGGTGGTGGCGATTGATTGGTCCGGTGACACATTTGAAC
AGCAAAATGCGCAATCAAACTACTCTATTGTCATCAATTCCCCCTCTATG
TTACCTGCGGCAGACCCAAGCGCGTTCCACCCTGCACGTTGTACCAGGTG
GAGATGTTGGGGGCGCCATAGACTGAGAAGGCAAACGACGCAGTTTTCAC
AGCCTTCTCTATGTCAAAAACAGCATTTTGGAGCAAATCCGAGAGCTTGG
AGGGACCTTTTTCTTGCACGGGAGACGCCATGGCTTGTGAAGCTTGCGGA
TCGGGTGCTAGTAGGAAGGCGACAGGGTCGGCTGAGGATGCTTTGAGTCC
TGTAGAGTAAGAGTCGTGTTGAAGTGTAGAAATGGGCTGAGGCTTTAGGT
GGGAGGGGTCCTGGGAGCGGGTGAATTCACCTCTAAAAGCTGCTGCTGTG
GGTTATACTATGCATTTCCTGTGTATGGCTGTGTAAACCATGGTGTAAAT
TTAAAAAGCCGATCGATCGGTCGCGGTAATGATGGCCATCTCTGCAAACT
AAAACGGATCTTGTGGTCTCAATATGGAAAAAAAAAGGTTTCTCGACGAC
AAGGCGAGGCAAGCAACTATTGTAACCACATTTCCGGTGATGGAAAAGGT
ATTCAATGCTTTTCTGCGCCATTATACTTATTTGTTTATCTTTTCTTGGT
ACATGGATCAGGTCTCGCGAACGCCTCGGTCCCCCTGCTCTCTCCTCTCA
CACCACCGACTCCGCATTAGCAATCTCGGAGCTAGTGGAGGGACAACCAC
AAATCGTTCGGCAAGGGCAGCAGAGAATAACCACAATAACATCCATGACT
GCTGACAGAAGCTTGCAGGGAAAGCACAGCACGTCGGAAATGATGCCCAT
CTTGCTTGGGGTTGGTGCGGTCTGGGGGTGGGAGTGGGGCTGCTGGCTCG
GTCTGCTCGTGCAGAGGAAAGGAATGCAGGGGAAAGAAGTGTTACTGTAT
TTCAGTGCCGATGTAGCGAGGCTCGACATGAATGAAACACACAACAAGTA
CCATATGCTGCGTGAATAAGATAGAATCTAGAATACTGAACTTACGGAAC
ATGTACATTTTTTGGGAGTGAGGGGTCGTTGAAATTTCTTTGGGACATGG
GCCATTTTTCAGCCTCATATACATCGAACTATCATATAATTTATAAAGTT
TTGAATTAGCTTTACTGGCCATCAACACGTCAAAAGGAGGGCGTTGTGGA
TGGCTTGGAGGAAAAGAAATCATAGAGCGGGTCCTGATCGCTTTCATGTA
ACCTCCCCGCTTTCCCCACTTCCCATTACAACGCTCCCCCTTTGGAGAGT
GAGAGCACGTGGACAGGCAGGGCGGAAAGGAGAATGCTATGAATTGAGGT
TGGCATGCAAACCATGGGAAAATGAAGAAAGAAAGGTGGGAAAAGACACG
GAGGAGAGAGAGACGACACAGAGGAAATTCCTATTTCTTCACAGACTTCT
TCCGGGACGTGCTTTTCCAAACTCTTTTCCGTCCTCCCATCTCTCCTGCT
ATTACTCGTCGCCCACTTCATATTCATCGGTTCCCTGCATCCTTATGGCC
AGCAATGTACAGTACCTTGTCAGCTAGTTAACCAACAACCACTACACCAC
ACACACAGACGAAGTAGAAAAAGGAGGAGGGGCTGAGCAGAAACTCCCCC
AGTCGTCTCTCTCCCTTCTCATT back to topCoding sequence (CDS) from alignment at scaffold_48:46658..48530+ >mRNA_10173 ID=mRNA_10173|Name=jgi.p|Nanoce1779_2|610034|organism=Nannochloropsis oceanica|type=CDS|length=414bp|location=Sequence derived from alignment at scaffold_48:46658..48530+ (Nannochloropsis oceanica)
ATGCTTTTCTGCGCCATTATACTTATTTGTTTATCTTTTCTTGGTACATG
GATCAGGTCTCGCGAACGCCTCGGTCCCCCTGCTCTCTCCTCTCACACCA
CCGACTCCGCATTAGCAATCTCGGAGCTAGTGGAGGGACAACCACAAATC
GTTCGGCAAGGGCAGCAGAGAATAACCACAATAACATCCATGACTGCTGA
CAGAAGCTTGCAGGGAAAGCACAGCACGTCGGAAATGATGCCCATCTTGC
TTGGGGTTGGTGCGGTCTGGGGGTGGGAGTGGGGCTGCTGGCTCGGTCTG
CTCGTGCAGAGGAAAGGAATGCAGGGGAAAGAAGTGTTACTGTATTTCAG
TGCCGATGTAGCGAGGCTCGACATGAATGAAACACACAACAAGTACCATA
TGCTGCGTGAATAA back to top
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