jgi.p|Nanoce1779_2|575040, mRNA_1017 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575040
Unique NamemRNA_1017
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length734
Alignment locationscaffold_2:1025839..1027157 -

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Properties
Property NameValue
TranscriptId575126
TrackFilteredModels2
ProteinId575040
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1025839..1027157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575040gene_1017Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575040mRNA_1017-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1017CDS_1017Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1017 ID=mRNA_1017|Name=jgi.p|Nanoce1779_2|575040|organism=Nannochloropsis oceanica|type=mRNA|length=734bp
ACAGACCCAACTATGATTCACAAGTGCGGCATCGTCCTATTTTTGTCCCT
GATGGCGACGGCAGGTGCGTTTTTTCTGCCTTCGGCCACTCCCCATGGTA
CCAGAATGAGCGCCGGGCGGGAGCAGGACAGCAGCACGAGCTTGGAGCGT
CGCGACCTCCTGCAAAACTCGGTGGGCCAGGTGCTGGGTTTGTCGGCACT
CATGCTAGGCAGGGCTAATCTCATGGGGACGCCGCAACAGGCGCAGGCAG
CAGTGGGGGAGGGTGGTCTCCCTGCTGTGACAGAGGCTTTTCAGCGCGTG
CTTCGGGGCCAACGGGAGTGGGCTAAGGTGGGCAAGACCATTGCGGACCG
AGAGGGGAAGCTGGCGGATGCTGAGTGGGTGAACACGCAAATCTTCTTGC
GCAATTCGTACATGGTGGGCGAGGACATGCGCCGGGTGGTCCGCGACTCG
GACGGAGAAAAGCGGGATAAGGGTACAGCCATCGCCAAAGAGTTCCAACG
TTTGACACTGGACATGGACAAGCCTGCCAAGGGCAAAGATTTCCAGGGGT
TCATTGAAGCGCAGAAGAAAGGCGCGGCCTACTTTGAAGAATTTCTTGCC
TTATTGAGTGATGTGCCGGACGAGCTGTAAGAAGGTTGTGGAAGGGTCAG
TGAGTGTTTGTGTGTGTGTGTGTGTTAGTGAGAGAAGGATTGAGAGGTGT
GTTGCGGTTGGAGAAAAAGGGGAATGTGCAACAC
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protein sequence of jgi.p|Nanoce1779_2|575040

>mRNA_1017-protein ID=mRNA_1017-protein|Name=jgi.p|Nanoce1779_2|575040|organism=Nannochloropsis oceanica|type=polypeptide|length=206bp
MIHKCGIVLFLSLMATAGAFFLPSATPHGTRMSAGREQDSSTSLERRDLL
QNSVGQVLGLSALMLGRANLMGTPQQAQAAVGEGGLPAVTEAFQRVLRGQ
REWAKVGKTIADREGKLADAEWVNTQIFLRNSYMVGEDMRRVVRDSDGEK
RDKGTAIAKEFQRLTLDMDKPAKGKDFQGFIEAQKKGAAYFEEFLALLSD
VPDEL*
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mRNA from alignment at scaffold_2:1025839..1027157-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1017 ID=mRNA_1017|Name=jgi.p|Nanoce1779_2|575040|organism=Nannochloropsis oceanica|type=mRNA|length=1319bp|location=Sequence derived from alignment at scaffold_2:1025839..1027157- (Nannochloropsis oceanica)
ACAGACCCAACTATGATTCACAAGTGCGGCATCGTCCTATTTTTGTCCCT
GATGGCGACGGCAGGTGCGTTTTTTCTGCCTTCGGCCACTCCCCATGGTA
CCAGAATGAGCGCCGGGCGGGAGCAGGACAGCAGCACGAGCTTGGAGCGT
CGCGACCTCCTGCAAAACTCGGTGGGCCAGGTGCTGGGTTTGTCGGCACT
CATGCTAGGCAGGGCTAATCTCATGGGGACGCCGCAACAGGCGCAGGCAG
CAGTGGGGGAGGGTACGTTTACGGATGGGGAAAGAATTATGTGCAGCGCT
GTAGCAGAATGTATGGATGGAGTAAAGCACACATACAGGTATCGCCCGAC
CACTTTCATTCACACACGAAAATGAAACTTGTGCATCGTTTTAGGTGGTC
TCCCTGCTGTGACAGAGGCTTTTCAGCGCGTGCTTCGGGGCCAACGGGAG
TGGGCTAAGGTGGGCAAGACCATTGCGGACCGAGAGGGGAAGCTGGCGGA
TGCTGAGTGGGTGAACACGCAAATCTTCTTGCGGTGCGTTCAAAGAGGGA
TTGGGGGAAGAGGGTGTTTGGTTCCCAAAAATAATTGCTAGCCGAAAAAT
GGTAGGGAAAGTAATGAGGGGCCGAGCTGGAAGGAGGAAGACTAGAAACC
CCTCACGCGCGCCGTTGGGCGCTCGTCCAGCCGAGGCACCAGAATGTCCG
TCCCTCCTTCTTTATGAGTATCGATAAAACCGTCACTGCTCATCTAACCC
CCTCCCACACCCAGCAATTCGTACATGGTGGGCGAGGACATGCGCCGGGT
GGTCCGCGACTCGGACGGAGAAAAGCGGGTAGGTCATGAAGAAGGCGAAG
GATGGAAGGAGGGTGACTCCACGGAAAAGTGGATGGATGAGATGTATGCT
TGCATCAGCCGTTAGCCAGTTTTCTTGATTGTTTCAGTCGCGTACATTCG
TAGTAAGGGAATCAAGTCCTGCTCCGTGACTCATGAACTCGCCACCTCTC
ACCCCTCTTTCTCGCCTTCCTCTTGTCCCTTCCCAACCCAATTGAAACAG
GATAAGGGTACAGCCATCGCCAAAGAGTTCCAACGTTTGACACTGGACAT
GGACAAGCCTGCCAAGGGCAAAGATTTCCAGGGGTTCATTGAAGCGCAGA
AGAAAGGCGCGGCCTACTTTGAAGAATTTCTTGCCTTATTGAGTGATGTG
CCGGACGAGCTGTAAGAAGGTTGTGGAAGGGTCAGTGAGTGTTTGTGTGT
GTGTGTGTGTTAGTGAGAGAAGGATTGAGAGGTGTGTTGCGGTTGGAGAA
AAAGGGGAATGTGCAACAC
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Coding sequence (CDS) from alignment at scaffold_2:1025839..1027157-

>mRNA_1017 ID=mRNA_1017|Name=jgi.p|Nanoce1779_2|575040|organism=Nannochloropsis oceanica|type=CDS|length=2472bp|location=Sequence derived from alignment at scaffold_2:1025839..1027157- (Nannochloropsis oceanica)
GATAAGGGTACAGCCATCGCCAAAGAGTTCCAACGTTTGACACTGGACAT
GGACAAGCCTGCCAAGGGCAAAGATTTCCAGGGGTTCATTGAAGCGCAGA
AGAAAGGCGCGGCCTACTTTGAAGAATTTCTTGCCTTATTGAGTGATGTG
CCGGACGAGCTGTAACAATTCGTACATGGTGGGCGAGGACATGCGCCGGG
TGGTCCGCGACTCGGACGGAGAAAAGCGGGTGGTCTCCCTGCTGTGACAG
AGGCTTTTCAGCGCGTGCTTCGGGGCCAACGGGAGTGGGCTAAGGTGGGC
AAGACCATTGCGGACCGAGAGGGGAAGCTGGCGGATGCTGAGTGGGTGAA
CACGCAAATCTTCTTGCGATGATTCACAAGTGCGGCATCGTCCTATTTTT
GTCCCTGATGGCGACGGCAGGTGCGTTTTTTCTGCCTTCGGCCACTCCCC
ATGGTACCAGAATGAGCGCCGGGCGGGAGCAGGACAGCAGCACGAGCTTG
GAGCGTCGCGACCTCCTGCAAAACTCGGTGGGCCAGGTGCTGGGTTTGTC
GGCACTCATGCTAGGCAGGGCTAATCTCATGGGGACGCCGCAACAGGCGC
AGGCAGCAGTGGGGGAGGGATAAGGGTACAGCCATCGCCAAAGAGTTCCA
ACGTTTGACACTGGACATGGACAAGCCTGCCAAGGGCAAAGATTTCCAGG
GGTTCATTGAAGCGCAGAAGAAAGGCGCGGCCTACTTTGAAGAATTTCTT
GCCTTATTGAGTGATGTGCCGGACGAGCTGTAACAATTCGTACATGGTGG
GCGAGGACATGCGCCGGGTGGTCCGCGACTCGGACGGAGAAAAGCGGGTG
GTCTCCCTGCTGTGACAGAGGCTTTTCAGCGCGTGCTTCGGGGCCAACGG
GAGTGGGCTAAGGTGGGCAAGACCATTGCGGACCGAGAGGGGAAGCTGGC
GGATGCTGAGTGGGTGAACACGCAAATCTTCTTGCGATGATTCACAAGTG
CGGCATCGTCCTATTTTTGTCCCTGATGGCGACGGCAGGTGCGTTTTTTC
TGCCTTCGGCCACTCCCCATGGTACCAGAATGAGCGCCGGGCGGGAGCAG
GACAGCAGCACGAGCTTGGAGCGTCGCGACCTCCTGCAAAACTCGGTGGG
CCAGGTGCTGGGTTTGTCGGCACTCATGCTAGGCAGGGCTAATCTCATGG
GGACGCCGCAACAGGCGCAGGCAGCAGTGGGGGAGGGATAAGGGTACAGC
CATCGCCAAAGAGTTCCAACGTTTGACACTGGACATGGACAAGCCTGCCA
AGGGCAAAGATTTCCAGGGGTTCATTGAAGCGCAGAAGAAAGGCGCGGCC
TACTTTGAAGAATTTCTTGCCTTATTGAGTGATGTGCCGGACGAGCTGTA
ACAATTCGTACATGGTGGGCGAGGACATGCGCCGGGTGGTCCGCGACTCG
GACGGAGAAAAGCGGGTGGTCTCCCTGCTGTGACAGAGGCTTTTCAGCGC
GTGCTTCGGGGCCAACGGGAGTGGGCTAAGGTGGGCAAGACCATTGCGGA
CCGAGAGGGGAAGCTGGCGGATGCTGAGTGGGTGAACACGCAAATCTTCT
TGCGATGATTCACAAGTGCGGCATCGTCCTATTTTTGTCCCTGATGGCGA
CGGCAGGTGCGTTTTTTCTGCCTTCGGCCACTCCCCATGGTACCAGAATG
AGCGCCGGGCGGGAGCAGGACAGCAGCACGAGCTTGGAGCGTCGCGACCT
CCTGCAAAACTCGGTGGGCCAGGTGCTGGGTTTGTCGGCACTCATGCTAG
GCAGGGCTAATCTCATGGGGACGCCGCAACAGGCGCAGGCAGCAGTGGGG
GAGGGATAAGGGTACAGCCATCGCCAAAGAGTTCCAACGTTTGACACTGG
ACATGGACAAGCCTGCCAAGGGCAAAGATTTCCAGGGGTTCATTGAAGCG
CAGAAGAAAGGCGCGGCCTACTTTGAAGAATTTCTTGCCTTATTGAGTGA
TGTGCCGGACGAGCTGTAACAATTCGTACATGGTGGGCGAGGACATGCGC
CGGGTGGTCCGCGACTCGGACGGAGAAAAGCGGGTGGTCTCCCTGCTGTG
ACAGAGGCTTTTCAGCGCGTGCTTCGGGGCCAACGGGAGTGGGCTAAGGT
GGGCAAGACCATTGCGGACCGAGAGGGGAAGCTGGCGGATGCTGAGTGGG
TGAACACGCAAATCTTCTTGCGATGATTCACAAGTGCGGCATCGTCCTAT
TTTTGTCCCTGATGGCGACGGCAGGTGCGTTTTTTCTGCCTTCGGCCACT
CCCCATGGTACCAGAATGAGCGCCGGGCGGGAGCAGGACAGCAGCACGAG
CTTGGAGCGTCGCGACCTCCTGCAAAACTCGGTGGGCCAGGTGCTGGGTT
TGTCGGCACTCATGCTAGGCAGGGCTAATCTCATGGGGACGCCGCAACAG
GCGCAGGCAGCAGTGGGGGAGG
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Synonyms
Publications