jgi.p|Nanoce1779_2|610008, mRNA_10169 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|610008
Unique NamemRNA_10169
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1317
Alignment locationscaffold_48:32891..34207 -

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Properties
Property NameValue
TranscriptId610094
TrackFilteredModels2
ProteinId610008
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_48supercontigscaffold_48:32891..34207 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610008gene_10169Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610008mRNA_10169-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10169CDS_10169Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10169 ID=mRNA_10169|Name=jgi.p|Nanoce1779_2|610008|organism=Nannochloropsis oceanica|type=mRNA|length=1317bp
CCGCAGGAACCGCCTGTGGTCATCCTCCCCTCCACCCTCGCCGTCGACCT
CCTCCAGCTCCTGGCTTTTGACGAGGAGGGGGCAGGGCGGGAGGGTGGGA
GGGAGGGAGGGGTGTTTCGACACACCGTGGGGTTGCGCGTGGAGGAGGTG
GAGGAAGGGAAGGAGGGCGGGCAGGCGGGTGGGGAGGTAGTGTGGGCGCA
CAAGTCGCTGCTGGCCAAACGCTGCCCCCACTTCGAGGCCATGCTGGGAA
GTGGCATGCGGGAGGCGACACAGTCCATCATCACCCTCGCCGATGTGACC
CCTCCCGTCCTCCGCGCCCTCCTTGTCTACATCTACACCGATACGTTGCA
TGCCAATGCGGCCGTTGACAAGGTCCTCCTTCCCCTCCTCCTTCTCGCCC
ACCGCTATGATCTCTCGGCGCTCGTGGCCCTGTGTAGCGGGTACTTGCGG
AGGGCGCTGGTGGATCGAGGGTCGTGTGTGGACATCTTAAAGTGGAGCGA
CGCCTATCAGTTGTTGGAGCTGAAAAAGATGTGTATGGCAGCGGTGGTGA
TGAGGTCCTTGGATGAGGAGGTGCAGGGAGGAGGCGAGGAGGGGGAGGGG
GAGGGGCTGTCGGGGAAATTGTGGGAGGAGGTGGTGGAGTTTGGAATGAG
TTTTCAGGTTGGAAAGAGGTTGCCCGCGAGTGACGTCTGTTCGATGGTTT
TGGGAAGGAGGCACGAAGATGAGCAGAACCTGATGAAGCACACGATGGCA
GCCCTCTAGACGAGAGAGGGAGACAGGGGGGTCGGGGGAGAGTTCAACGG
AGCTTTGAAGAAGTTTGTATTGGTGAAGTGTATGGGGGAAAAGTGATATG
GCGCACGGGCCTTGGATTCTGGGAAGAAGAAATGAGTGGAGTGTTCGAGC
ACTTGGTGCGCATCGGGCATGACAAGCAGTATCAACCCAGTGATAACCTA
GGGTAAGGTGTCTCGTACGTTTAAAACTGCCTATAGGACCCGGGGGCACC
TTGTGCACGTTGGCCATGACAAGAAAGAGAAATAATGGGATATGATCGTT
AAAAGAGGACGCAATAATGTTGATAGGTTAGGAGAAGACCCAGAGGCCGC
ATAAATCTAGAGAGAGGGTTCATGATTCTCGAATAGACAAGAGAAGATAT
AGTGTAAATAGGAAAGCAGGTAGAGGAAGAGAGGGTAGTAGTGTATTTAG
AAAAGCAGGTAGAGGAAGAAAGGGAGGAAGGGAGGGAGGAAAATAAGAGG
AAAGCCGGGAGGAAGTGATTCATACATATCAAGTGAGAAAGCATCTCTTG
TTCAACCTTAATCAAGA
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protein sequence of jgi.p|Nanoce1779_2|610008

>mRNA_10169-protein ID=mRNA_10169-protein|Name=jgi.p|Nanoce1779_2|610008|organism=Nannochloropsis oceanica|type=polypeptide|length=173bp
MLGSGMREATQSIITLADVTPPVLRALLVYIYTDTLHANAAVDKVLLPLL
LLAHRYDLSALVALCSGYLRRALVDRGSCVDILKWSDAYQLLELKKMCMA
AVVMRSLDEEVQGGGEEGEGEGLSGKLWEEVVEFGMSFQVGKRLPASDVC
SMVLGRRHEDEQNLMKHTMAAL*
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mRNA from alignment at scaffold_48:32891..34207-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10169 ID=mRNA_10169|Name=jgi.p|Nanoce1779_2|610008|organism=Nannochloropsis oceanica|type=mRNA|length=1317bp|location=Sequence derived from alignment at scaffold_48:32891..34207- (Nannochloropsis oceanica)
CCGCAGGAACCGCCTGTGGTCATCCTCCCCTCCACCCTCGCCGTCGACCT
CCTCCAGCTCCTGGCTTTTGACGAGGAGGGGGCAGGGCGGGAGGGTGGGA
GGGAGGGAGGGGTGTTTCGACACACCGTGGGGTTGCGCGTGGAGGAGGTG
GAGGAAGGGAAGGAGGGCGGGCAGGCGGGTGGGGAGGTAGTGTGGGCGCA
CAAGTCGCTGCTGGCCAAACGCTGCCCCCACTTCGAGGCCATGCTGGGAA
GTGGCATGCGGGAGGCGACACAGTCCATCATCACCCTCGCCGATGTGACC
CCTCCCGTCCTCCGCGCCCTCCTTGTCTACATCTACACCGATACGTTGCA
TGCCAATGCGGCCGTTGACAAGGTCCTCCTTCCCCTCCTCCTTCTCGCCC
ACCGCTATGATCTCTCGGCGCTCGTGGCCCTGTGTAGCGGGTACTTGCGG
AGGGCGCTGGTGGATCGAGGGTCGTGTGTGGACATCTTAAAGTGGAGCGA
CGCCTATCAGTTGTTGGAGCTGAAAAAGATGTGTATGGCAGCGGTGGTGA
TGAGGTCCTTGGATGAGGAGGTGCAGGGAGGAGGCGAGGAGGGGGAGGGG
GAGGGGCTGTCGGGGAAATTGTGGGAGGAGGTGGTGGAGTTTGGAATGAG
TTTTCAGGTTGGAAAGAGGTTGCCCGCGAGTGACGTCTGTTCGATGGTTT
TGGGAAGGAGGCACGAAGATGAGCAGAACCTGATGAAGCACACGATGGCA
GCCCTCTAGACGAGAGAGGGAGACAGGGGGGTCGGGGGAGAGTTCAACGG
AGCTTTGAAGAAGTTTGTATTGGTGAAGTGTATGGGGGAAAAGTGATATG
GCGCACGGGCCTTGGATTCTGGGAAGAAGAAATGAGTGGAGTGTTCGAGC
ACTTGGTGCGCATCGGGCATGACAAGCAGTATCAACCCAGTGATAACCTA
GGGTAAGGTGTCTCGTACGTTTAAAACTGCCTATAGGACCCGGGGGCACC
TTGTGCACGTTGGCCATGACAAGAAAGAGAAATAATGGGATATGATCGTT
AAAAGAGGACGCAATAATGTTGATAGGTTAGGAGAAGACCCAGAGGCCGC
ATAAATCTAGAGAGAGGGTTCATGATTCTCGAATAGACAAGAGAAGATAT
AGTGTAAATAGGAAAGCAGGTAGAGGAAGAGAGGGTAGTAGTGTATTTAG
AAAAGCAGGTAGAGGAAGAAAGGGAGGAAGGGAGGGAGGAAAATAAGAGG
AAAGCCGGGAGGAAGTGATTCATACATATCAAGTGAGAAAGCATCTCTTG
TTCAACCTTAATCAAGA
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Coding sequence (CDS) from alignment at scaffold_48:32891..34207-

>mRNA_10169 ID=mRNA_10169|Name=jgi.p|Nanoce1779_2|610008|organism=Nannochloropsis oceanica|type=CDS|length=519bp|location=Sequence derived from alignment at scaffold_48:32891..34207- (Nannochloropsis oceanica)
ATGCTGGGAAGTGGCATGCGGGAGGCGACACAGTCCATCATCACCCTCGC
CGATGTGACCCCTCCCGTCCTCCGCGCCCTCCTTGTCTACATCTACACCG
ATACGTTGCATGCCAATGCGGCCGTTGACAAGGTCCTCCTTCCCCTCCTC
CTTCTCGCCCACCGCTATGATCTCTCGGCGCTCGTGGCCCTGTGTAGCGG
GTACTTGCGGAGGGCGCTGGTGGATCGAGGGTCGTGTGTGGACATCTTAA
AGTGGAGCGACGCCTATCAGTTGTTGGAGCTGAAAAAGATGTGTATGGCA
GCGGTGGTGATGAGGTCCTTGGATGAGGAGGTGCAGGGAGGAGGCGAGGA
GGGGGAGGGGGAGGGGCTGTCGGGGAAATTGTGGGAGGAGGTGGTGGAGT
TTGGAATGAGTTTTCAGGTTGGAAAGAGGTTGCCCGCGAGTGACGTCTGT
TCGATGGTTTTGGGAAGGAGGCACGAAGATGAGCAGAACCTGATGAAGCA
CACGATGGCAGCCCTCTAG
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Synonyms
Publications