jgi.p|Nanoce1779_2|609981, mRNA_10165 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609981
Unique NamemRNA_10165
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1377
Alignment locationscaffold_48:18286..19662 +

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Properties
Property NameValue
TranscriptId610067
TrackFilteredModels2
ProteinId609981
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_48supercontigscaffold_48:18286..19662 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609981gene_10165Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609981mRNA_10165-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10165CDS_10165Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10165 ID=mRNA_10165|Name=jgi.p|Nanoce1779_2|609981|organism=Nannochloropsis oceanica|type=mRNA|length=1377bp
CAGTCGTCGTCCACATGGTTTTGGCCTCGATCCGCCGAGCTGCCACGAGC
CAGGTAAGTTTGTACTTCCACTGAAAAGCCGTATGCCTTCCCTTATCTTC
CACTCTTCTCTCCCTTTTGCTTTCACTAAGCGGGCCGAGGCCGCGGCCAT
GGTGGGAGTGGCGTGTGTGGGCCTGGGTTCATTAATTTCGTCGGCACAGA
GTGAATCTGTGCTCTCAGATCCTGCCAGCGAAGCCGCCTACTCGTATAAA
TTTCCCGTGGCTTTTCCCTCTGTGGCAAATGCCATTCGCAACGGGCACGT
GATTGTGCTGGATACGATGTTGAGCGACCGAGAGCTTCATGCTGCGCGAG
AGGACGTGGATATTTTGCTACAACAAGGTGGCGGTACCTTTGCGGCGAAC
GCCAATAGGGACTCGAGCGTGCGGCGCGACTCGGTGGTGTGGATAACGGG
ACAAGAAAAAGGGGTCGGACCTGGATTGAAGCATGCCGTCGCGTTGCTGC
GTGGCCTGGCGCACGAGTTTGCGGCAACGCCTGCCTACGATAAGAGTGTG
TTGTGGGTTCAGTCCGCCGCGCAACTGGCATGCTATGCAGGGGACAGCCA
AGCCCATTATACACCGCATCTGGATGCCTCCACGGATAGCATCTGGACCC
TCGGTTTGAGTGCCTGGCTTCGTGCCCGGGCCTACCGCGAGAGGACCATA
ACGGCGATATTGTACTTAAATGATAAGAATTGGGACAAGGATACAATGGG
CGGCTGCTTGCGATGTCACTTGCCTAATTCTTCTTCCAAGACTGGTTGTG
ATTCGGGTGGTGTTGCTGTTGCATCTGATGGTGGTGGTAGTGCTCTTGGT
CGAATGAGGACGAAGCAGCAGCCGATGTTACAAGACGGTGATGCCATTGA
CACTACTGCCACAAATGACGTTACCGTGCCTGCCATGCCTTCTGTTCTTT
TCTCTGGTGATACAACTGCAACTGGTGGCGCGGGTAGCGCTTTTGATAAG
AATGAGACGCACGCCAGGTCACCGGATAGCGATGCTCCTGCAGCTGCAGT
CGGTGCTTCTATCACTGCCACGATTCATGCAGCGTCTGCTGATGGCGCAG
CCAACGCGAATGCTTATACCGTTGCTGCCGATCTTCCTCCTGCTGCTGCT
CTTGCAGTCATAGGCATTGACAACGCGAGTGCAGCGATGGCGACGACAGA
ACACGACGTTGCTCCGTACGGGGGTCGCTTAGTGCTCTTCGACAGTGCTG
CCATTCTGCACGAGGTATTGCCGTCGCACAACGAGGGCGAACCGCGGATA
GCACTGACGGTGTGGATTAGCGACCGGCGAGAACGGTAGTTACCACACAT
GGCTGCCAGTTGACGAAAATGAGAAAA
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protein sequence of jgi.p|Nanoce1779_2|609981

>mRNA_10165-protein ID=mRNA_10165-protein|Name=jgi.p|Nanoce1779_2|609981|organism=Nannochloropsis oceanica|type=polypeptide|length=419bp
MPSLIFHSSLPFAFTKRAEAAAMVGVACVGLGSLISSAQSESVLSDPASE
AAYSYKFPVAFPSVANAIRNGHVIVLDTMLSDRELHAAREDVDILLQQGG
GTFAANANRDSSVRRDSVVWITGQEKGVGPGLKHAVALLRGLAHEFAATP
AYDKSVLWVQSAAQLACYAGDSQAHYTPHLDASTDSIWTLGLSAWLRARA
YRERTITAILYLNDKNWDKDTMGGCLRCHLPNSSSKTGCDSGGVAVASDG
GGSALGRMRTKQQPMLQDGDAIDTTATNDVTVPAMPSVLFSGDTTATGGA
GSAFDKNETHARSPDSDAPAAAVGASITATIHAASADGAANANAYTVAAD
LPPAAALAVIGIDNASAAMATTEHDVAPYGGRLVLFDSAAILHEVLPSHN
EGEPRIALTVWISDRRER*
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mRNA from alignment at scaffold_48:18286..19662+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10165 ID=mRNA_10165|Name=jgi.p|Nanoce1779_2|609981|organism=Nannochloropsis oceanica|type=mRNA|length=1377bp|location=Sequence derived from alignment at scaffold_48:18286..19662+ (Nannochloropsis oceanica)
CAGTCGTCGTCCACATGGTTTTGGCCTCGATCCGCCGAGCTGCCACGAGC
CAGGTAAGTTTGTACTTCCACTGAAAAGCCGTATGCCTTCCCTTATCTTC
CACTCTTCTCTCCCTTTTGCTTTCACTAAGCGGGCCGAGGCCGCGGCCAT
GGTGGGAGTGGCGTGTGTGGGCCTGGGTTCATTAATTTCGTCGGCACAGA
GTGAATCTGTGCTCTCAGATCCTGCCAGCGAAGCCGCCTACTCGTATAAA
TTTCCCGTGGCTTTTCCCTCTGTGGCAAATGCCATTCGCAACGGGCACGT
GATTGTGCTGGATACGATGTTGAGCGACCGAGAGCTTCATGCTGCGCGAG
AGGACGTGGATATTTTGCTACAACAAGGTGGCGGTACCTTTGCGGCGAAC
GCCAATAGGGACTCGAGCGTGCGGCGCGACTCGGTGGTGTGGATAACGGG
ACAAGAAAAAGGGGTCGGACCTGGATTGAAGCATGCCGTCGCGTTGCTGC
GTGGCCTGGCGCACGAGTTTGCGGCAACGCCTGCCTACGATAAGAGTGTG
TTGTGGGTTCAGTCCGCCGCGCAACTGGCATGCTATGCAGGGGACAGCCA
AGCCCATTATACACCGCATCTGGATGCCTCCACGGATAGCATCTGGACCC
TCGGTTTGAGTGCCTGGCTTCGTGCCCGGGCCTACCGCGAGAGGACCATA
ACGGCGATATTGTACTTAAATGATAAGAATTGGGACAAGGATACAATGGG
CGGCTGCTTGCGATGTCACTTGCCTAATTCTTCTTCCAAGACTGGTTGTG
ATTCGGGTGGTGTTGCTGTTGCATCTGATGGTGGTGGTAGTGCTCTTGGT
CGAATGAGGACGAAGCAGCAGCCGATGTTACAAGACGGTGATGCCATTGA
CACTACTGCCACAAATGACGTTACCGTGCCTGCCATGCCTTCTGTTCTTT
TCTCTGGTGATACAACTGCAACTGGTGGCGCGGGTAGCGCTTTTGATAAG
AATGAGACGCACGCCAGGTCACCGGATAGCGATGCTCCTGCAGCTGCAGT
CGGTGCTTCTATCACTGCCACGATTCATGCAGCGTCTGCTGATGGCGCAG
CCAACGCGAATGCTTATACCGTTGCTGCCGATCTTCCTCCTGCTGCTGCT
CTTGCAGTCATAGGCATTGACAACGCGAGTGCAGCGATGGCGACGACAGA
ACACGACGTTGCTCCGTACGGGGGTCGCTTAGTGCTCTTCGACAGTGCTG
CCATTCTGCACGAGGTATTGCCGTCGCACAACGAGGGCGAACCGCGGATA
GCACTGACGGTGTGGATTAGCGACCGGCGAGAACGGTAGTTACCACACAT
GGCTGCCAGTTGACGAAAATGAGAAAA
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Coding sequence (CDS) from alignment at scaffold_48:18286..19662+

>mRNA_10165 ID=mRNA_10165|Name=jgi.p|Nanoce1779_2|609981|organism=Nannochloropsis oceanica|type=CDS|length=1257bp|location=Sequence derived from alignment at scaffold_48:18286..19662+ (Nannochloropsis oceanica)
ATGCCTTCCCTTATCTTCCACTCTTCTCTCCCTTTTGCTTTCACTAAGCG
GGCCGAGGCCGCGGCCATGGTGGGAGTGGCGTGTGTGGGCCTGGGTTCAT
TAATTTCGTCGGCACAGAGTGAATCTGTGCTCTCAGATCCTGCCAGCGAA
GCCGCCTACTCGTATAAATTTCCCGTGGCTTTTCCCTCTGTGGCAAATGC
CATTCGCAACGGGCACGTGATTGTGCTGGATACGATGTTGAGCGACCGAG
AGCTTCATGCTGCGCGAGAGGACGTGGATATTTTGCTACAACAAGGTGGC
GGTACCTTTGCGGCGAACGCCAATAGGGACTCGAGCGTGCGGCGCGACTC
GGTGGTGTGGATAACGGGACAAGAAAAAGGGGTCGGACCTGGATTGAAGC
ATGCCGTCGCGTTGCTGCGTGGCCTGGCGCACGAGTTTGCGGCAACGCCT
GCCTACGATAAGAGTGTGTTGTGGGTTCAGTCCGCCGCGCAACTGGCATG
CTATGCAGGGGACAGCCAAGCCCATTATACACCGCATCTGGATGCCTCCA
CGGATAGCATCTGGACCCTCGGTTTGAGTGCCTGGCTTCGTGCCCGGGCC
TACCGCGAGAGGACCATAACGGCGATATTGTACTTAAATGATAAGAATTG
GGACAAGGATACAATGGGCGGCTGCTTGCGATGTCACTTGCCTAATTCTT
CTTCCAAGACTGGTTGTGATTCGGGTGGTGTTGCTGTTGCATCTGATGGT
GGTGGTAGTGCTCTTGGTCGAATGAGGACGAAGCAGCAGCCGATGTTACA
AGACGGTGATGCCATTGACACTACTGCCACAAATGACGTTACCGTGCCTG
CCATGCCTTCTGTTCTTTTCTCTGGTGATACAACTGCAACTGGTGGCGCG
GGTAGCGCTTTTGATAAGAATGAGACGCACGCCAGGTCACCGGATAGCGA
TGCTCCTGCAGCTGCAGTCGGTGCTTCTATCACTGCCACGATTCATGCAG
CGTCTGCTGATGGCGCAGCCAACGCGAATGCTTATACCGTTGCTGCCGAT
CTTCCTCCTGCTGCTGCTCTTGCAGTCATAGGCATTGACAACGCGAGTGC
AGCGATGGCGACGACAGAACACGACGTTGCTCCGTACGGGGGTCGCTTAG
TGCTCTTCGACAGTGCTGCCATTCTGCACGAGGTATTGCCGTCGCACAAC
GAGGGCGAACCGCGGATAGCACTGACGGTGTGGATTAGCGACCGGCGAGA
ACGGTAG
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Synonyms
Publications