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Properties
| Property Name | Value |
|---|
| TranscriptId | 634001 |
| Track | FilteredModels2 |
| ProteinId | 633915 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_48 | supercontig | scaffold_48:13284..15218 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10163 ID=mRNA_10163|Name=jgi.p|Nanoce1779_2|633915|organism=Nannochloropsis oceanica|type=mRNA|length=1243bp
AGCACACAGACACTCCCTCTTTAGGCCCCGTCCTCCCTCCTCCTTCCCTA
GATGGCAGGAAGCAATAAAAGTGGCACAGGCCTAGTAAGGTTGTACCTGA
ACGCTTACAATCTTTCTCAAACTGGTTTATGGGTGATGGTTCTGGTTTCT
ACCATTAAAGCCTTGCTGGCGGACGTACACGACTATGTGGGCGTTTGGAC
CGAGGCCGGACCTGCGACCAAGCTTGCTGTTGGCGGTGCATGGCTCGAGC
TGGTGCACGTCTTCCTGGGCCTGGCGGGCGGCAGTGTCTCCTCAGCGTTT
TGGCAGAACTTCGGGCGGTCTTTTGTCCTCTTCGCTATTGTGGACGCCTT
CAACACACCCACGGGCCTGGCGTGGCTTCCGGCGTTGCTGCTGGCCTGGT
CGGGGGGCGAGCTGATTCGGTACCCCTTCTACCTTCTGGGCAGCAACGCG
CCGCCCTTCTTAGTCTGGCTCCGGTATTCAGCCTTCATCGTACTGTACCC
GCTGGGCATGGCCTCTGAGGTGGCCTTGCTCCTGCGCACACTGCCCGAGG
CCAGGGCAGCCGTGGAGAAGGAGGACAGATTCTGCATGCGTCTGCCATGG
GCTGAGGAGTGGCGAGCCTTCAACTTTTACTACTTTCTGGTGTTTGGGTT
GCTCGTGCTATACCCGTTCGCTATTCCCTACATGTTATTCTACATGGTCA
AGCAGCGCAAGAAGCGTCTCGGGGGGAGTAAGGAAGGGAATGAGGGAGAG
GCGGCGTGTGGGGCAGTCCCGGCGGGAGGCAGCTGGAAGAGCCGGAAGGC
CGAATAGGAGGCGCGCCGTGGAGCCCAAGAAAGAAGGGATCCACGGAAGC
GACGGATAAAGGTAGAAGTGTGAGACAAATGGCAAGGCAGTGAGGGTGGA
CAAGGGAGAGAACGCCTTGGAAAAAGGGACCGATATGGGGTCCGGGGAGG
CATAAAGGGGAGCATTGAGAGTAGACGTGGGGAAAAAGGCGGCATTGTAG
GGAAGAAGATAGCAGAAATAAAGGGGAGGGATGGACGTTGAGATGGGAAG
AGGATAGATTTGGGAGAAATGCAGCCGTGTCCACTATCACATAGATAGGG
GAGGTGGTGCACTTGCTTGCGTAAGGCAGGCTGCATGGATTCCATCTAAA
AGCGAGACGGGAAAAGAGAGGCCGCAAAGGGGAGAAGAGGAAGGCATGCG
AATAACAACAAAGCAAATGTAAACGAAATGACGGAATGGTTTC back to topprotein sequence of jgi.p|Nanoce1779_2|633915 >mRNA_10163-protein ID=mRNA_10163-protein|Name=jgi.p|Nanoce1779_2|633915|organism=Nannochloropsis oceanica|type=polypeptide|length=252bp
MAGSNKSGTGLVRLYLNAYNLSQTGLWVMVLVSTIKALLADVHDYVGVWT
EAGPATKLAVGGAWLELVHVFLGLAGGSVSSAFWQNFGRSFVLFAIVDAF
NTPTGLAWLPALLLAWSGGELIRYPFYLLGSNAPPFLVWLRYSAFIVLYP
LGMASEVALLLRTLPEARAAVEKEDRFCMRLPWAEEWRAFNFYYFLVFGL
LVLYPFAIPYMLFYMVKQRKKRLGGSKEGNEGEAACGAVPAGGSWKSRKA
E* back to topmRNA from alignment at scaffold_48:13284..15218- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10163 ID=mRNA_10163|Name=jgi.p|Nanoce1779_2|633915|organism=Nannochloropsis oceanica|type=mRNA|length=1935bp|location=Sequence derived from alignment at scaffold_48:13284..15218- (Nannochloropsis oceanica)
AGCACACAGACACTCCCTCTTTAGGCCCCGTCCTCCCTCCTCCTTCCCTA
GATGGCAGGAAGCAATAAAAGTGGCACAGGCCTAGTAAGGTTGTACCTGA
ACGCTTACAATCTTTCTCAAACTGGTTTATGGGTGATGGTTCTGGTTTCT
ACCATTAAAGCCTTGCTGGCGGACGTACACGACTATGTGGGCGTTTGGAC
CGAGGCCGGACCTGCGACCAAGCTTGCTGTTGGTACGTATGTGTCAAGGA
CAGTGTAGATAGGGAGGGTAAAAGAAAAAATGTGTGCTGCGTAGGTAATT
ATATGTTGCTCTGGAAAAAAAGTGGAGGACGAGTCAAATAAAAATGCCAC
TTGAAACGGGTAGAGGTAAGGAGAGGTGTCATGGGAGAGTTTCGACGACG
AACTTGTGATGGTGCCATTCGGTCCTCAAATGCGGTAGGAGTGGACGCCT
GGCTTGTGTTCTCCTGCGTGCTCCTTCATAATTTTCTCCTTTTCCCTTCC
TCCTTTCAACATCCCCCCCTCCCTCTCCAACATTTCCACTCACCAAACAG
GCGGTGCATGGCTCGAGCTGGTGCACGTCTTCCTGGGCCTGGCGGGCGGC
AGTGTCTCCTCAGCGTTTTGGCAGAACTTCGGGCGGTCTTTTGTCCTCTT
CGCTATTGTGGACGCCTTCAACACACCCACGGGCCTGGCGTGGCTTCCGG
CGTTGCTGCTGGCCTGGTCGGGGGGCGAGCTGATTCGGTAGGGAGGGAGA
CAGGGAGGGAAAGAGGATGGCTACCCGGGAGAGGGCTAGAGCCGCATTAT
TTGTCAGTGGTGTATTCGGAAGAGGAGGTGTATTTATTATGTTGTCTCTG
TTTCCGGCTCATCTATCTGTATTCTCTTTTATAATCCTCCATGAGTTTTC
TCTGGCTCTAAGCCTCTCTCTGGCTCCTCGCTGGCTCTAAGCCTCTCTCG
TCTGTGTCCTCCTGTTCCTCCTTCCTCTCCCGCCCCCCTTCCCATAGGTA
CCCCTTCTACCTTCTGGGCAGCAACGCGCCGCCCTTCTTAGTCTGGCTCC
GGTATTCAGCCTTCATCGTACTGTACCCGCTGGGCATGGCCTCTGAGGTG
GCCTTGCTCCTGCGCACACTGCCCGAGGCCAGGGCAGCCGTGGAGAAGGA
GGACAGATTCTGCATGCGTCTGCCATGGGCTGAGGAGTGGCGAGCCTTCA
ACTTTTACTACTTTGTGAGTTTCGTGGTGGACCAAGGAGGGAAGGGGGTG
AGGGGGATTACGTTGGCAGGCAAAACCTTACACGCATGCTCCTCCCTTCA
CCTCCCGTCTCCTTACTCCACTCAACAGCTGGTGTTTGGGTTGCTCGTGC
TATACCCGTTCGCTATTCCCTACATGTTATTCTACATGGTCAAGCAGCGC
AAGAAGCGTCTCGGGGGGAGTAAGGAAGGGAATGAGGGAGAGGCGGCGTG
TGGGGCAGTCCCGGCGGGAGGCAGCTGGAAGAGCCGGAAGGCCGAATAGG
AGGCGCGCCGTGGAGCCCAAGAAAGAAGGGATCCACGGAAGCGACGGATA
AAGGTAGAAGTGTGAGACAAATGGCAAGGCAGTGAGGGTGGACAAGGGAG
AGAACGCCTTGGAAAAAGGGACCGATATGGGGTCCGGGGAGGCATAAAGG
GGAGCATTGAGAGTAGACGTGGGGAAAAAGGCGGCATTGTAGGGAAGAAG
ATAGCAGAAATAAAGGGGAGGGATGGACGTTGAGATGGGAAGAGGATAGA
TTTGGGAGAAATGCAGCCGTGTCCACTATCACATAGATAGGGGAGGTGGT
GCACTTGCTTGCGTAAGGCAGGCTGCATGGATTCCATCTAAAAGCGAGAC
GGGAAAAGAGAGGCCGCAAAGGGGAGAAGAGGAAGGCATGCGAATAACAA
CAAAGCAAATGTAAACGAAATGACGGAATGGTTTC back to topCoding sequence (CDS) from alignment at scaffold_48:13284..15218- >mRNA_10163 ID=mRNA_10163|Name=jgi.p|Nanoce1779_2|633915|organism=Nannochloropsis oceanica|type=CDS|length=3024bp|location=Sequence derived from alignment at scaffold_48:13284..15218- (Nannochloropsis oceanica)
CTGGTGTTTGGGTTGCTCGTGCTATACCCGTTCGCTATTCCCTACATGTT
ATTCTACATGGTCAAGCAGCGCAAGAAGCGTCTCGGGGGGAGTAAGGAAG
GGAATGAGGGAGAGGCGGCGTGTGGGGCAGTCCCGGCGGGAGGCAGCTGG
AAGAGCCGGAAGGCCGAATAGGTACCCCTTCTACCTTCTGGGCAGCAACG
CGCCGCCCTTCTTAGTCTGGCTCCGGTATTCAGCCTTCATCGTACTGTAC
CCGCTGGGCATGGCCTCTGAGGTGGCCTTGCTCCTGCGCACACTGCCCGA
GGCCAGGGCAGCCGTGGAGAAGGAGGACAGATTCTGCATGCGTCTGCCAT
GGGCTGAGGAGTGGCGAGCCTTCAACTTTTACTACTTTGCGGTGCATGGC
TCGAGCTGGTGCACGTCTTCCTGGGCCTGGCGGGCGGCAGTGTCTCCTCA
GCGTTTTGGCAGAACTTCGGGCGGTCTTTTGTCCTCTTCGCTATTGTGGA
CGCCTTCAACACACCCACGGGCCTGGCGTGGCTTCCGGCGTTGCTGCTGG
CCTGGTCGGGGGGCGAGCTGATTCGATGGCAGGAAGCAATAAAAGTGGCA
CAGGCCTAGTAAGGTTGTACCTGAACGCTTACAATCTTTCTCAAACTGGT
TTATGGGTGATGGTTCTGGTTTCTACCATTAAAGCCTTGCTGGCGGACGT
ACACGACTATGTGGGCGTTTGGACCGAGGCCGGACCTGCGACCAAGCTTG
CTGTTGCTGGTGTTTGGGTTGCTCGTGCTATACCCGTTCGCTATTCCCTA
CATGTTATTCTACATGGTCAAGCAGCGCAAGAAGCGTCTCGGGGGGAGTA
AGGAAGGGAATGAGGGAGAGGCGGCGTGTGGGGCAGTCCCGGCGGGAGGC
AGCTGGAAGAGCCGGAAGGCCGAATAGGTACCCCTTCTACCTTCTGGGCA
GCAACGCGCCGCCCTTCTTAGTCTGGCTCCGGTATTCAGCCTTCATCGTA
CTGTACCCGCTGGGCATGGCCTCTGAGGTGGCCTTGCTCCTGCGCACACT
GCCCGAGGCCAGGGCAGCCGTGGAGAAGGAGGACAGATTCTGCATGCGTC
TGCCATGGGCTGAGGAGTGGCGAGCCTTCAACTTTTACTACTTTGCGGTG
CATGGCTCGAGCTGGTGCACGTCTTCCTGGGCCTGGCGGGCGGCAGTGTC
TCCTCAGCGTTTTGGCAGAACTTCGGGCGGTCTTTTGTCCTCTTCGCTAT
TGTGGACGCCTTCAACACACCCACGGGCCTGGCGTGGCTTCCGGCGTTGC
TGCTGGCCTGGTCGGGGGGCGAGCTGATTCGATGGCAGGAAGCAATAAAA
GTGGCACAGGCCTAGTAAGGTTGTACCTGAACGCTTACAATCTTTCTCAA
ACTGGTTTATGGGTGATGGTTCTGGTTTCTACCATTAAAGCCTTGCTGGC
GGACGTACACGACTATGTGGGCGTTTGGACCGAGGCCGGACCTGCGACCA
AGCTTGCTGTTGCTGGTGTTTGGGTTGCTCGTGCTATACCCGTTCGCTAT
TCCCTACATGTTATTCTACATGGTCAAGCAGCGCAAGAAGCGTCTCGGGG
GGAGTAAGGAAGGGAATGAGGGAGAGGCGGCGTGTGGGGCAGTCCCGGCG
GGAGGCAGCTGGAAGAGCCGGAAGGCCGAATAGGTACCCCTTCTACCTTC
TGGGCAGCAACGCGCCGCCCTTCTTAGTCTGGCTCCGGTATTCAGCCTTC
ATCGTACTGTACCCGCTGGGCATGGCCTCTGAGGTGGCCTTGCTCCTGCG
CACACTGCCCGAGGCCAGGGCAGCCGTGGAGAAGGAGGACAGATTCTGCA
TGCGTCTGCCATGGGCTGAGGAGTGGCGAGCCTTCAACTTTTACTACTTT
GCGGTGCATGGCTCGAGCTGGTGCACGTCTTCCTGGGCCTGGCGGGCGGC
AGTGTCTCCTCAGCGTTTTGGCAGAACTTCGGGCGGTCTTTTGTCCTCTT
CGCTATTGTGGACGCCTTCAACACACCCACGGGCCTGGCGTGGCTTCCGG
CGTTGCTGCTGGCCTGGTCGGGGGGCGAGCTGATTCGATGGCAGGAAGCA
ATAAAAGTGGCACAGGCCTAGTAAGGTTGTACCTGAACGCTTACAATCTT
TCTCAAACTGGTTTATGGGTGATGGTTCTGGTTTCTACCATTAAAGCCTT
GCTGGCGGACGTACACGACTATGTGGGCGTTTGGACCGAGGCCGGACCTG
CGACCAAGCTTGCTGTTGCTGGTGTTTGGGTTGCTCGTGCTATACCCGTT
CGCTATTCCCTACATGTTATTCTACATGGTCAAGCAGCGCAAGAAGCGTC
TCGGGGGGAGTAAGGAAGGGAATGAGGGAGAGGCGGCGTGTGGGGCAGTC
CCGGCGGGAGGCAGCTGGAAGAGCCGGAAGGCCGAATAGGTACCCCTTCT
ACCTTCTGGGCAGCAACGCGCCGCCCTTCTTAGTCTGGCTCCGGTATTCA
GCCTTCATCGTACTGTACCCGCTGGGCATGGCCTCTGAGGTGGCCTTGCT
CCTGCGCACACTGCCCGAGGCCAGGGCAGCCGTGGAGAAGGAGGACAGAT
TCTGCATGCGTCTGCCATGGGCTGAGGAGTGGCGAGCCTTCAACTTTTAC
TACTTTGCGGTGCATGGCTCGAGCTGGTGCACGTCTTCCTGGGCCTGGCG
GGCGGCAGTGTCTCCTCAGCGTTTTGGCAGAACTTCGGGCGGTCTTTTGT
CCTCTTCGCTATTGTGGACGCCTTCAACACACCCACGGGCCTGGCGTGGC
TTCCGGCGTTGCTGCTGGCCTGGTCGGGGGGCGAGCTGATTCGATGGCAG
GAAGCAATAAAAGTGGCACAGGCCTAGTAAGGTTGTACCTGAACGCTTAC
AATCTTTCTCAAACTGGTTTATGGGTGATGGTTCTGGTTTCTACCATTAA
AGCCTTGCTGGCGGACGTACACGACTATGTGGGCGTTTGGACCGAGGCCG
GACCTGCGACCAAGCTTGCTGTTG back to top
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