jgi.p|Nanoce1779_2|609973, mRNA_10162 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609973
Unique NamemRNA_10162
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1858
Alignment locationscaffold_48:11149..13187 -

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Properties
Property NameValue
TranscriptId610059
TrackFilteredModels2
ProteinId609973
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_48supercontigscaffold_48:11149..13187 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609973gene_10162Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609973mRNA_10162-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10162CDS_10162Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10162 ID=mRNA_10162|Name=jgi.p|Nanoce1779_2|609973|organism=Nannochloropsis oceanica|type=mRNA|length=1858bp
GAGTGTTGCTGTTGGTGCGGCCGATTGAACCGGCGCAATCGGACGTCTTC
CACACCATACTCATTCGTCATTACAATTGCAGGTCGGATGTAAGGATGTG
TTTCTTGTGCGCATTGTTGCTGGCCGCCGGTATCGGAGAAAAAAATGTTT
TATCCTTGTTCTTACGGATGGACCAAGTCGAGGTAACGTCACGATGTCTA
GGCAAATCTTTGCCGGAGCCAATACACCGACAGGCCCCACACGCGCAGTA
AGGCGCAGGCAACATGAGGGCTAGGGAGCCCTCAAACGAGATACATGCAC
TCCCTATATACGTGGAGCGCCGCCTCGCTACTTTAAATTGCATGGGGCCG
CCGCTGCTCATTCCCGCCACTACCTCCCGCAAACAAGCAATCCAGTATCA
AGGGCAACATCAAGGGACATAAATGCCAAGAGGGGATCCCTTGTTTTAGG
TATCCGCCGGGTGCATACTAAAGTTAATCCTCGTGTCAAATCATGGCGCC
CCTATCATTTTATTATGACCAATTGATCAGTTCAACTTCACCAACAACTA
CATCCCTCGCACCCCCCTCTTCCTGGAATCACAGAACACTCCATCATCCT
CATCCCATCTCGCAATCAGCCATGACTTGCAAGTCCTGTATCAGTCGGTT
CTTTGGCATTCTGGGGAGTAACATCTTCTTCATCGCGCTGGTGGCCTTTG
CTGTGGCTGTTTCTACCAACCAGTGGACCGTTTCGCACCAGCGTGGAGTT
GACGTAAAAGGCGTCCTCACGGACGCTGATATGGAGTTTGGCATATTCGA
TATGCTTGCCTCGGTGCGACAGGGCGAAGAAGTCATTTGGAGTCAGTACT
CGTACAATTGGTGTGACAGTTTGGATGTTAGGGACCCGAATGCTCCATGG
ACCGGGGACACTACGTACTGCAACATGCTTCTGACAGCACAAGTCTGCAC
CATCATATGTCTGGCCACGGGTCTGACGGCGGGCATTATTGCTGCTTTCC
TTTCAGCGGGCGTGATTGTGAGCAAGAGCTTCCGGGACATCGCGTGCGCC
TCCTCCTTCTTCATGCTAGTACAGTTTGCCTCGGCCCTGATTACGTTCGC
ATGCATGTTTGGCATCAATAGTAAGATCAACAGAAACCTGGACCATACCT
TCCCAGGGTTGGCCGTCACGCCCTCCTATTCCGCAGCCTTAGCCGTGCTA
AGCGCCGGCCTTGTGCTCCTGGGCTTCATCACCACCTTCATCCTTGGCCG
CTGCGGCAAGGAAAGACCGACCGAGGCCGACGAGGACGAGGAAAAGGACG
AGGAGGTTGGGACCACCGCGCCCCAATCAGCAGAGAATAAGAAAAGCGGA
GCCACAGACGAGCCAGCTTGGAGTAGGGAGGAGCTGAAAGTGTCGCAGTA
ACGAAGCAAGCAAGCAAGCAAGCAATCAGGGGCAACAGCTGCTGAACGTA
TAGTATATGGGGACTGCAATTGGGAGAAGGGGGCCGGGGAAGAAGACAGG
AGGGGGCGAGCAAGGAAGTAACACGCATTACTGGAGACAGTGATGAGAGC
TTTTGTGTGGAAGAACGAAATGACTACCCGAAGACGAGAGTGTGGAAATG
GGAGAAAAGAAAAATGGGAAATACGAGGAAAAGCGAGAGGAAACGACGAA
AGCATAGCATATGTGTGTGTTGCCTGGGTATCTGTGAGCGTGTGTATCTG
ATTTGTGTGTAGATGAGGATCGAGGAAAGGAAACGACATGAGGATGGATG
TGAGGAATGACGACGACGATGGAAAACAGTGATGAAGAGAAAGCTAGAAA
GGCTTCGTTCGGGAAAGCAGTGGGAGGCTAAACGGAAGCAAACAAAAAAG
AGGGGACA
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protein sequence of jgi.p|Nanoce1779_2|609973

>mRNA_10162-protein ID=mRNA_10162-protein|Name=jgi.p|Nanoce1779_2|609973|organism=Nannochloropsis oceanica|type=polypeptide|length=303bp
MAPLSFYYDQLISSTSPTTTSLAPPSSWNHRTLHHPHPISQSAMTCKSCI
SRFFGILGSNIFFIALVAFAVAVSTNQWTVSHQRGVDVKGVLTDADMEFG
IFDMLASVRQGEEVIWSQYSYNWCDSLDVRDPNAPWTGDTTYCNMLLTAQ
VCTIICLATGLTAGIIAAFLSAGVIVSKSFRDIACASSFFMLVQFASALI
TFACMFGINSKINRNLDHTFPGLAVTPSYSAALAVLSAGLVLLGFITTFI
LGRCGKERPTEADEDEEKDEEVGTTAPQSAENKKSGATDEPAWSREELKV
SQ*
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mRNA from alignment at scaffold_48:11149..13187-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10162 ID=mRNA_10162|Name=jgi.p|Nanoce1779_2|609973|organism=Nannochloropsis oceanica|type=mRNA|length=2039bp|location=Sequence derived from alignment at scaffold_48:11149..13187- (Nannochloropsis oceanica)
GAGTGTTGCTGTTGGTGCGGCCGATTGAACCGGCGCAATCGGACGTCTTC
CACACCATACTCATTCGTCATTACAATTGCAGGTCGGATGTAAGGATGTG
TTTCTTGTGCGCATTGTTGCTGGCCGCCGGTATCGGAGAAAAAAATGTTT
TATCCTTGTTCTTACGGATGGACCAAGTCGAGGTAACGTCACGATGTCTA
GGCAAATCTTTGCCGGAGCCAATACACCGACAGGCCCCACACGCGCAGTA
AGGCGCAGGCAACATGAGGGCTAGGGAGCCCTCAAACGAGATACATGCAC
TCCCTATATACGTGGAGCGCCGCCTCGCTACTTTAAATTGCATGGGGCCG
CCGCTGCTCATTCCCGCCACTACCTCCCGCAAACAAGCAATCCAGTATCA
AGGGCAACATCAAGGGACATAAATGCCAAGAGGGGATCCCTTGTTTTAGG
TATCCGCCGGGTGCATACTAAAGTTAATCCTCGTGTCAAATCATGGCGCC
CCTATCATTTTATTATGACCAATTGATCAGTTCAACTTCACCAACAACTA
CATCCCTCGCACCCCCCTCTTCCTGGAATCACAGAACACTCCATCATCCT
CATCCCATCTCGCAATCAGCCATGACTTGCAAGTCCTGTATCAGTCGGTT
CTTTGGCATTCTGGGGAGTAACATCTTCTTCATCGCGCTGGTGGCCTTTG
CTGTGGCTGTTTCTACCAACCAGTGGACCGTTTCGCACCAGCGTGGAGTT
GACGTAAAAGGCGTCCTCACGGACGCTGATATGGAGTTTGGCATATTCGA
TATGCTTGCCTCGGTGCGACAGGGCGAAGAAGTCATTTGGAGTCAGTACT
CGTACAATTGGTGTGACAGTTTGGATGTTAGGGACCCGAATGTAAGGAGG
AGAAGAGGAGAAAGAGGAAAAGGCGGTTTGTTAAGGGGACATTGATTGGA
GGAATCAAAGATTATTTTGTGTTTTCCTTAGCCCTCAACCCTGATGGACT
CCATCGTTCTTTTATATTCTCATCTTAAAACTACCTCGTTTTCCCCTCCA
TCTCTCCCTTCCTTTTCCACAGGCTCCATGGACCGGGGACACTACGTACT
GCAACATGCTTCTGACAGCACAAGTCTGCACCATCATATGTCTGGCCACG
GGTCTGACGGCGGGCATTATTGCTGCTTTCCTTTCAGCGGGCGTGATTGT
GAGCAAGAGCTTCCGGGACATCGCGTGCGCCTCCTCCTTCTTCATGCTAG
TACAGTTTGCCTCGGCCCTGATTACGTTCGCATGCATGTTTGGCATCAAT
AGTAAGATCAACAGAAACCTGGACCATACCTTCCCAGGGTTGGCCGTCAC
GCCCTCCTATTCCGCAGCCTTAGCCGTGCTAAGCGCCGGCCTTGTGCTCC
TGGGCTTCATCACCACCTTCATCCTTGGCCGCTGCGGCAAGGAAAGACCG
ACCGAGGCCGACGAGGACGAGGAAAAGGACGAGGAGGTTGGGACCACCGC
GCCCCAATCAGCAGAGAATAAGAAAAGCGGAGCCACAGACGAGCCAGCTT
GGAGTAGGGAGGAGCTGAAAGTGTCGCAGTAACGAAGCAAGCAAGCAAGC
AAGCAATCAGGGGCAACAGCTGCTGAACGTATAGTATATGGGGACTGCAA
TTGGGAGAAGGGGGCCGGGGAAGAAGACAGGAGGGGGCGAGCAAGGAAGT
AACACGCATTACTGGAGACAGTGATGAGAGCTTTTGTGTGGAAGAACGAA
ATGACTACCCGAAGACGAGAGTGTGGAAATGGGAGAAAAGAAAAATGGGA
AATACGAGGAAAAGCGAGAGGAAACGACGAAAGCATAGCATATGTGTGTG
TTGCCTGGGTATCTGTGAGCGTGTGTATCTGATTTGTGTGTAGATGAGGA
TCGAGGAAAGGAAACGACATGAGGATGGATGTGAGGAATGACGACGACGA
TGGAAAACAGTGATGAAGAGAAAGCTAGAAAGGCTTCGTTCGGGAAAGCA
GTGGGAGGCTAAACGGAAGCAAACAAAAAAGAGGGGACA
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Coding sequence (CDS) from alignment at scaffold_48:11149..13187-

>mRNA_10162 ID=mRNA_10162|Name=jgi.p|Nanoce1779_2|609973|organism=Nannochloropsis oceanica|type=CDS|length=1818bp|location=Sequence derived from alignment at scaffold_48:11149..13187- (Nannochloropsis oceanica)
GCTCCATGGACCGGGGACACTACGTACTGCAACATGCTTCTGACAGCACA
AGTCTGCACCATCATATGTCTGGCCACGGGTCTGACGGCGGGCATTATTG
CTGCTTTCCTTTCAGCGGGCGTGATTGTGAGCAAGAGCTTCCGGGACATC
GCGTGCGCCTCCTCCTTCTTCATGCTAGTACAGTTTGCCTCGGCCCTGAT
TACGTTCGCATGCATGTTTGGCATCAATAGTAAGATCAACAGAAACCTGG
ACCATACCTTCCCAGGGTTGGCCGTCACGCCCTCCTATTCCGCAGCCTTA
GCCGTGCTAAGCGCCGGCCTTGTGCTCCTGGGCTTCATCACCACCTTCAT
CCTTGGCCGCTGCGGCAAGGAAAGACCGACCGAGGCCGACGAGGACGAGG
AAAAGGACGAGGAGGTTGGGACCACCGCGCCCCAATCAGCAGAGAATAAG
AAAAGCGGAGCCACAGACGAGCCAGCTTGGAGTAGGGAGGAGCTGAAAGT
GTCGCAGTAAATGGCGCCCCTATCATTTTATTATGACCAATTGATCAGTT
CAACTTCACCAACAACTACATCCCTCGCACCCCCCTCTTCCTGGAATCAC
AGAACACTCCATCATCCTCATCCCATCTCGCAATCAGCCATGACTTGCAA
GTCCTGTATCAGTCGGTTCTTTGGCATTCTGGGGAGTAACATCTTCTTCA
TCGCGCTGGTGGCCTTTGCTGTGGCTGTTTCTACCAACCAGTGGACCGTT
TCGCACCAGCGTGGAGTTGACGTAAAAGGCGTCCTCACGGACGCTGATAT
GGAGTTTGGCATATTCGATATGCTTGCCTCGGTGCGACAGGGCGAAGAAG
TCATTTGGAGTCAGTACTCGTACAATTGGTGTGACAGTTTGGATGTTAGG
GACCCGAATGCTCCATGGACCGGGGACACTACGTACTGCAACATGCTTCT
GACAGCACAAGTCTGCACCATCATATGTCTGGCCACGGGTCTGACGGCGG
GCATTATTGCTGCTTTCCTTTCAGCGGGCGTGATTGTGAGCAAGAGCTTC
CGGGACATCGCGTGCGCCTCCTCCTTCTTCATGCTAGTACAGTTTGCCTC
GGCCCTGATTACGTTCGCATGCATGTTTGGCATCAATAGTAAGATCAACA
GAAACCTGGACCATACCTTCCCAGGGTTGGCCGTCACGCCCTCCTATTCC
GCAGCCTTAGCCGTGCTAAGCGCCGGCCTTGTGCTCCTGGGCTTCATCAC
CACCTTCATCCTTGGCCGCTGCGGCAAGGAAAGACCGACCGAGGCCGACG
AGGACGAGGAAAAGGACGAGGAGGTTGGGACCACCGCGCCCCAATCAGCA
GAGAATAAGAAAAGCGGAGCCACAGACGAGCCAGCTTGGAGTAGGGAGGA
GCTGAAAGTGTCGCAGTAAATGGCGCCCCTATCATTTTATTATGACCAAT
TGATCAGTTCAACTTCACCAACAACTACATCCCTCGCACCCCCCTCTTCC
TGGAATCACAGAACACTCCATCATCCTCATCCCATCTCGCAATCAGCCAT
GACTTGCAAGTCCTGTATCAGTCGGTTCTTTGGCATTCTGGGGAGTAACA
TCTTCTTCATCGCGCTGGTGGCCTTTGCTGTGGCTGTTTCTACCAACCAG
TGGACCGTTTCGCACCAGCGTGGAGTTGACGTAAAAGGCGTCCTCACGGA
CGCTGATATGGAGTTTGGCATATTCGATATGCTTGCCTCGGTGCGACAGG
GCGAAGAAGTCATTTGGAGTCAGTACTCGTACAATTGGTGTGACAGTTTG
GATGTTAGGGACCCGAAT
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Synonyms
Publications