jgi.p|Nanoce1779_2|609969, mRNA_10161 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|609969
Unique Name	mRNA_10161
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3056
Alignment location	scaffold_48:8099..11154 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	610055
Track	FilteredModels2
ProteinId	609969

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_48	supercontig	scaffold_48:8099..11154 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609969	gene_10161	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609969	mRNA_10161-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10161	CDS_10161	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_48:8099..11154+
coding sequence from alignment at scaffold_48:8099..11154+

mRNA sequence

>mRNA_10161 ID=mRNA_10161|Name=jgi.p|Nanoce1779_2|609969|organism=Nannochloropsis oceanica|type=mRNA|length=3056bp
TCTGGTGTTGCGCTGTCCCCTGCCTGTCTTGATATGTTTCCTTCTCCTCC
AGAACCAAATTTTCAACCCGTTCATTCACTTACCCAAAGATGTACACACA
ATACGACAATTTAGCGAAACCATGCCACCGATTGGGGTTGTTTAGTCAGG
ACGCATATCGCACCGCTCTCTCCGGCGCGATCACGACCGAGAGTGATGAG
GCCCTCTCTTCGTATGCATCGCGACCCCTCAGTTGTGTTACTGCGTTGCC
TGACGCAAAGGTTCCTCTTCTCTTTTTCTTCGTCTTTCTATTGCCGCCGC
GCGCTGTCGTCCACCCCTCAGCCGCCATCGCCACTGCTTACCCTTTCGCC
CGCTGTCACAGCCGCCTTGCAGGCCCGCAAGGCCGTGGTGGCTCTCGAAT
CGACCATTATCACGCATGGTATGCCCTATCCCACCAATCTTCAGACTGCT
CGAGATGTAGAAGCTCTTGTTGTGGCCGGGGGTGCCATACCAGCCACTAT
TGCCATCTTGGATGGCCGCCTGTGTGTAGGCCTGACGCCTGCTCAGCTTG
AGGCCTTGGCGAAGGAAGGGCCCGCGCGCGCCATCAAGTGCTCTCTCAGG
GATCTACCGTGGGCTCTAGCGAGTAACGCATGGGGTGCAACCACTGTTGC
GAGCACTCTGCACATTGCCAAATTGGCCAACATTAGCGTGTTTGTGACAG
GTGGGGTAGGAGGCGTGCATCGAGGAGCGGAGCAGACGATGGACGTGTCG
GCAGACTTGCTCGAGTTGGGACGGGTACCAGGGATGGCTGTGGTGTGTGC
TGGTGTTAAATCCATTCTGGACATATCCAAGACGCTGGAGGTGTTGGAGA
CGCAGGGTGTGCCGGTGATCAGCTACCAGACCGACGCCTTCCCCGCCTTC
TTTACCCCCGACTCGGGCCTCCGGGCCCCCGCGCGGGTGGACTCGCCGGG
GGAGGTGGCGCGGATGCTACAGGCCTCTATCGATGCCCGTTTGCGTAGCA
GTATTCTGGTGGCTGTGCCTAACCCAGTTCCTGCGGCTTCGGCCGCCACC
CAGGCGGCGATTGAGGAGGCGCTGCGGGAGGCAGAAGTAAGGGGCTTGGC
GGGGAAGGAGGTGACACCCTTCTTACTGCAGCGAGTGAACGAGGCCACGG
GCGGGGCGTCTCTCAAGGCAAACATTGAGCTGATCAAGAACAACGCTAGA
GTGGGCACAGCTATTGCCGTGGCTCTGGCTGAAGAGAAGGAGGAGGAGAG
GAGGATGGAAGGTGGTCTGATGGGAAAAGGACAAGCCAGAGGACAAGGAG
CGAGTGGAGAGTGGGAGGTATCCTATTCTTCTTCAGCATCGTCACTGCCT
GCCTCAGCATCTGCTTCTCGATCATCGCCATCTCCATCGCAAGCATCACC
CCCACCCCCGGCAGTGGTAGTCGTTGGCGGTGCCGTTCTGGATCTGGTGG
GGAGCCCCAAGCCTGCCTCTAACGACGATCACAACGATGTGAAGCAGCAA
GTTCAGCGGCTGGAACGCGGCACGTCCAGCCCAGGCATTATTCGGCAAAA
GGAAGGGGGCGTGGCTCGCAATGTGGCGGAGGGGTTGACTCGCCTCGGTG
TCTCCACTGCCCTTGTCTCAACCGTCGCTCAAGACCCCGCGGGTGCTGCC
CTCGTTGCCTCCCTCCGCGCCCTGGGGCCTCTCTTGCATCTCGACTGTAG
TAACGGCAATAATGAGGTCGAGCTATTTTACCAGGCGCCTCACCCTGCCC
ATCGTACAGCCAGCTGCTTGGTGGCCTTGGACGAGGCGGGCGACTTGGTG
GCGGCGGTGGCGGACATGGACATCTTTACCGACTGCCTTACGCCCCAGCG
CGTCGTAGCAGGGCTGGACGCGGCAGCTGAAGCTGCTAATATTGCTGGCA
CTAGTTCTACTGGAGAGAGGTCGTCGTCATGTCATTCCCCCTCTCTGGCC
CTTGTCGTGAGCGACGGCAACTTGGCGGTGCCGGCCTTCAGGGCCCTGGC
CACAGCATGCGCCTCGCGGGGACTGCCCCTCTTGTTCGAGCCTACCTCGG
CCAGCAAGGCCCTCCTCCCCCTTCAGGCTCGCGTCCTTCATCTTGTCAGC
CTCATGACACCCAACCTCAGGGAGCTGGATGTGCTGGCAAAGGCTTTAAG
GGAGGAAGGGGGAGGCAGGGAGACAGGTTCCCACCACGAGGTAGTGGAGC
TGGAGGAGCATCTGATAAAGGCGCTGCGGGATGGGAGTGGAGGGGTGTCG
GCAGAAGAGGAGGTTATGCAATTGCTCCGGCCTAATATAGATAGGGTATT
GGTGGGCATGACGGACGGAGTAGGAGTAGGGGCAGCAGATGGTTTCCAAA
GGAAGAGCAATGTAGAGGGATGGAAGGGCGAGAAGCACCTGCTGGTGACG
TTGGGAAAGCACGGGCTGGTCTGGGCCTCTGTGTCGGCAGCGCCAAATGC
CAACAAGGCAACAAAGACGAGAAGGGACATCAACATAAAGTACCTGCCTA
TCCCCGGTGGGCAGGCGGTGGAGGCGATGGCCGACTGCACGGGTGCGGGC
GACACGTTGGTGGCAGGGATTGTGGCGGCCTTGGTTCGAGCAGTGGAAAG
AGGGATGGAAGGAGCGCTAGAGATGGGCTTGGCAGCAGCAATACAGTCAG
TTCAAGTGAATGAGGCAGTGCCGAAGCACTTGACATGGGAGGGGCTGCAG
GCGACAGTGGCGAGAGGGAGGGGGAAGGAATTTTAACGGCATGAGGTCTC
TGGGAAAGGCCGAACTGATTCCTGCAAGGTGGGGGTGCTTGGGCCAGACA
TGCCCTTTCCTCCAATTCTTTTGTCCACGCCTCCGCTCGGTAAGAGAAAT
GTAGGCGTGTGTGAGTCTTGACAGAAGATGGCCGTTGAGTAGGGGGCAAG
CGGGGGAAGTGGTGATAGTAATCCACCACGGCATGCGAGCGCTTGCACGT
TTCGATAGGCTGGGGGGTACGAAAGAGGCAGCGCTTCGAAATAAAATGGT
TTCTGAAAGTACCTTGTGTATAATGAAAATATGAAAAACAAGAAAAAAAA
TGTCCC

protein sequence of jgi.p|Nanoce1779_2|609969

>mRNA_10161-protein ID=mRNA_10161-protein|Name=jgi.p|Nanoce1779_2|609969|organism=Nannochloropsis oceanica|type=polypeptide|length=847bp
MRPSLRMHRDPSVVLLRCLTQRFLFSFSSSFYCRRALSSTPQPPSPLLTL
SPAVTAALQARKAVVALESTIITHGMPYPTNLQTARDVEALVVAGGAIPA
TIAILDGRLCVGLTPAQLEALAKEGPARAIKCSLRDLPWALASNAWGATT
VASTLHIAKLANISVFVTGGVGGVHRGAEQTMDVSADLLELGRVPGMAVV
CAGVKSILDISKTLEVLETQGVPVISYQTDAFPAFFTPDSGLRAPARVDS
PGEVARMLQASIDARLRSSILVAVPNPVPAASAATQAAIEEALREAEVRG
LAGKEVTPFLLQRVNEATGGASLKANIELIKNNARVGTAIAVALAEEKEE
ERRMEGGLMGKGQARGQGASGEWEVSYSSSASSLPASASASRSSPSPSQA
SPPPPAVVVVGGAVLDLVGSPKPASNDDHNDVKQQVQRLERGTSSPGIIR
QKEGGVARNVAEGLTRLGVSTALVSTVAQDPAGAALVASLRALGPLLHLD
CSNGNNEVELFYQAPHPAHRTASCLVALDEAGDLVAAVADMDIFTDCLTP
QRVVAGLDAAAEAANIAGTSSTGERSSSCHSPSLALVVSDGNLAVPAFRA
LATACASRGLPLLFEPTSASKALLPLQARVLHLVSLMTPNLRELDVLAKA
LREEGGGRETGSHHEVVELEEHLIKALRDGSGGVSAEEEVMQLLRPNIDR
VLVGMTDGVGVGAADGFQRKSNVEGWKGEKHLLVTLGKHGLVWASVSAAP
NANKATKTRRDINIKYLPIPGGQAVEAMADCTGAGDTLVAGIVAALVRAV
ERGMEGALEMGLAAAIQSVQVNEAVPKHLTWEGLQATVARGRGKEF*

mRNA from alignment at scaffold_48:8099..11154+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10161 ID=mRNA_10161|Name=jgi.p|Nanoce1779_2|609969|organism=Nannochloropsis oceanica|type=mRNA|length=3056bp|location=Sequence derived from alignment at scaffold_48:8099..11154+ (Nannochloropsis oceanica)
TCTGGTGTTGCGCTGTCCCCTGCCTGTCTTGATATGTTTCCTTCTCCTCC
AGAACCAAATTTTCAACCCGTTCATTCACTTACCCAAAGATGTACACACA
ATACGACAATTTAGCGAAACCATGCCACCGATTGGGGTTGTTTAGTCAGG
ACGCATATCGCACCGCTCTCTCCGGCGCGATCACGACCGAGAGTGATGAG
GCCCTCTCTTCGTATGCATCGCGACCCCTCAGTTGTGTTACTGCGTTGCC
TGACGCAAAGGTTCCTCTTCTCTTTTTCTTCGTCTTTCTATTGCCGCCGC
GCGCTGTCGTCCACCCCTCAGCCGCCATCGCCACTGCTTACCCTTTCGCC
CGCTGTCACAGCCGCCTTGCAGGCCCGCAAGGCCGTGGTGGCTCTCGAAT
CGACCATTATCACGCATGGTATGCCCTATCCCACCAATCTTCAGACTGCT
CGAGATGTAGAAGCTCTTGTTGTGGCCGGGGGTGCCATACCAGCCACTAT
TGCCATCTTGGATGGCCGCCTGTGTGTAGGCCTGACGCCTGCTCAGCTTG
AGGCCTTGGCGAAGGAAGGGCCCGCGCGCGCCATCAAGTGCTCTCTCAGG
GATCTACCGTGGGCTCTAGCGAGTAACGCATGGGGTGCAACCACTGTTGC
GAGCACTCTGCACATTGCCAAATTGGCCAACATTAGCGTGTTTGTGACAG
GTGGGGTAGGAGGCGTGCATCGAGGAGCGGAGCAGACGATGGACGTGTCG
GCAGACTTGCTCGAGTTGGGACGGGTACCAGGGATGGCTGTGGTGTGTGC
TGGTGTTAAATCCATTCTGGACATATCCAAGACGCTGGAGGTGTTGGAGA
CGCAGGGTGTGCCGGTGATCAGCTACCAGACCGACGCCTTCCCCGCCTTC
TTTACCCCCGACTCGGGCCTCCGGGCCCCCGCGCGGGTGGACTCGCCGGG
GGAGGTGGCGCGGATGCTACAGGCCTCTATCGATGCCCGTTTGCGTAGCA
GTATTCTGGTGGCTGTGCCTAACCCAGTTCCTGCGGCTTCGGCCGCCACC
CAGGCGGCGATTGAGGAGGCGCTGCGGGAGGCAGAAGTAAGGGGCTTGGC
GGGGAAGGAGGTGACACCCTTCTTACTGCAGCGAGTGAACGAGGCCACGG
GCGGGGCGTCTCTCAAGGCAAACATTGAGCTGATCAAGAACAACGCTAGA
GTGGGCACAGCTATTGCCGTGGCTCTGGCTGAAGAGAAGGAGGAGGAGAG
GAGGATGGAAGGTGGTCTGATGGGAAAAGGACAAGCCAGAGGACAAGGAG
CGAGTGGAGAGTGGGAGGTATCCTATTCTTCTTCAGCATCGTCACTGCCT
GCCTCAGCATCTGCTTCTCGATCATCGCCATCTCCATCGCAAGCATCACC
CCCACCCCCGGCAGTGGTAGTCGTTGGCGGTGCCGTTCTGGATCTGGTGG
GGAGCCCCAAGCCTGCCTCTAACGACGATCACAACGATGTGAAGCAGCAA
GTTCAGCGGCTGGAACGCGGCACGTCCAGCCCAGGCATTATTCGGCAAAA
GGAAGGGGGCGTGGCTCGCAATGTGGCGGAGGGGTTGACTCGCCTCGGTG
TCTCCACTGCCCTTGTCTCAACCGTCGCTCAAGACCCCGCGGGTGCTGCC
CTCGTTGCCTCCCTCCGCGCCCTGGGGCCTCTCTTGCATCTCGACTGTAG
TAACGGCAATAATGAGGTCGAGCTATTTTACCAGGCGCCTCACCCTGCCC
ATCGTACAGCCAGCTGCTTGGTGGCCTTGGACGAGGCGGGCGACTTGGTG
GCGGCGGTGGCGGACATGGACATCTTTACCGACTGCCTTACGCCCCAGCG
CGTCGTAGCAGGGCTGGACGCGGCAGCTGAAGCTGCTAATATTGCTGGCA
CTAGTTCTACTGGAGAGAGGTCGTCGTCATGTCATTCCCCCTCTCTGGCC
CTTGTCGTGAGCGACGGCAACTTGGCGGTGCCGGCCTTCAGGGCCCTGGC
CACAGCATGCGCCTCGCGGGGACTGCCCCTCTTGTTCGAGCCTACCTCGG
CCAGCAAGGCCCTCCTCCCCCTTCAGGCTCGCGTCCTTCATCTTGTCAGC
CTCATGACACCCAACCTCAGGGAGCTGGATGTGCTGGCAAAGGCTTTAAG
GGAGGAAGGGGGAGGCAGGGAGACAGGTTCCCACCACGAGGTAGTGGAGC
TGGAGGAGCATCTGATAAAGGCGCTGCGGGATGGGAGTGGAGGGGTGTCG
GCAGAAGAGGAGGTTATGCAATTGCTCCGGCCTAATATAGATAGGGTATT
GGTGGGCATGACGGACGGAGTAGGAGTAGGGGCAGCAGATGGTTTCCAAA
GGAAGAGCAATGTAGAGGGATGGAAGGGCGAGAAGCACCTGCTGGTGACG
TTGGGAAAGCACGGGCTGGTCTGGGCCTCTGTGTCGGCAGCGCCAAATGC
CAACAAGGCAACAAAGACGAGAAGGGACATCAACATAAAGTACCTGCCTA
TCCCCGGTGGGCAGGCGGTGGAGGCGATGGCCGACTGCACGGGTGCGGGC
GACACGTTGGTGGCAGGGATTGTGGCGGCCTTGGTTCGAGCAGTGGAAAG
AGGGATGGAAGGAGCGCTAGAGATGGGCTTGGCAGCAGCAATACAGTCAG
TTCAAGTGAATGAGGCAGTGCCGAAGCACTTGACATGGGAGGGGCTGCAG
GCGACAGTGGCGAGAGGGAGGGGGAAGGAATTTTAACGGCATGAGGTCTC
TGGGAAAGGCCGAACTGATTCCTGCAAGGTGGGGGTGCTTGGGCCAGACA
TGCCCTTTCCTCCAATTCTTTTGTCCACGCCTCCGCTCGGTAAGAGAAAT
GTAGGCGTGTGTGAGTCTTGACAGAAGATGGCCGTTGAGTAGGGGGCAAG
CGGGGGAAGTGGTGATAGTAATCCACCACGGCATGCGAGCGCTTGCACGT
TTCGATAGGCTGGGGGGTACGAAAGAGGCAGCGCTTCGAAATAAAATGGT
TTCTGAAAGTACCTTGTGTATAATGAAAATATGAAAAACAAGAAAAAAAA
TGTCCC

Coding sequence (CDS) from alignment at scaffold_48:8099..11154+

>mRNA_10161 ID=mRNA_10161|Name=jgi.p|Nanoce1779_2|609969|organism=Nannochloropsis oceanica|type=CDS|length=2541bp|location=Sequence derived from alignment at scaffold_48:8099..11154+ (Nannochloropsis oceanica)
ATGAGGCCCTCTCTTCGTATGCATCGCGACCCCTCAGTTGTGTTACTGCG
TTGCCTGACGCAAAGGTTCCTCTTCTCTTTTTCTTCGTCTTTCTATTGCC
GCCGCGCGCTGTCGTCCACCCCTCAGCCGCCATCGCCACTGCTTACCCTT
TCGCCCGCTGTCACAGCCGCCTTGCAGGCCCGCAAGGCCGTGGTGGCTCT
CGAATCGACCATTATCACGCATGGTATGCCCTATCCCACCAATCTTCAGA
CTGCTCGAGATGTAGAAGCTCTTGTTGTGGCCGGGGGTGCCATACCAGCC
ACTATTGCCATCTTGGATGGCCGCCTGTGTGTAGGCCTGACGCCTGCTCA
GCTTGAGGCCTTGGCGAAGGAAGGGCCCGCGCGCGCCATCAAGTGCTCTC
TCAGGGATCTACCGTGGGCTCTAGCGAGTAACGCATGGGGTGCAACCACT
GTTGCGAGCACTCTGCACATTGCCAAATTGGCCAACATTAGCGTGTTTGT
GACAGGTGGGGTAGGAGGCGTGCATCGAGGAGCGGAGCAGACGATGGACG
TGTCGGCAGACTTGCTCGAGTTGGGACGGGTACCAGGGATGGCTGTGGTG
TGTGCTGGTGTTAAATCCATTCTGGACATATCCAAGACGCTGGAGGTGTT
GGAGACGCAGGGTGTGCCGGTGATCAGCTACCAGACCGACGCCTTCCCCG
CCTTCTTTACCCCCGACTCGGGCCTCCGGGCCCCCGCGCGGGTGGACTCG
CCGGGGGAGGTGGCGCGGATGCTACAGGCCTCTATCGATGCCCGTTTGCG
TAGCAGTATTCTGGTGGCTGTGCCTAACCCAGTTCCTGCGGCTTCGGCCG
CCACCCAGGCGGCGATTGAGGAGGCGCTGCGGGAGGCAGAAGTAAGGGGC
TTGGCGGGGAAGGAGGTGACACCCTTCTTACTGCAGCGAGTGAACGAGGC
CACGGGCGGGGCGTCTCTCAAGGCAAACATTGAGCTGATCAAGAACAACG
CTAGAGTGGGCACAGCTATTGCCGTGGCTCTGGCTGAAGAGAAGGAGGAG
GAGAGGAGGATGGAAGGTGGTCTGATGGGAAAAGGACAAGCCAGAGGACA
AGGAGCGAGTGGAGAGTGGGAGGTATCCTATTCTTCTTCAGCATCGTCAC
TGCCTGCCTCAGCATCTGCTTCTCGATCATCGCCATCTCCATCGCAAGCA
TCACCCCCACCCCCGGCAGTGGTAGTCGTTGGCGGTGCCGTTCTGGATCT
GGTGGGGAGCCCCAAGCCTGCCTCTAACGACGATCACAACGATGTGAAGC
AGCAAGTTCAGCGGCTGGAACGCGGCACGTCCAGCCCAGGCATTATTCGG
CAAAAGGAAGGGGGCGTGGCTCGCAATGTGGCGGAGGGGTTGACTCGCCT
CGGTGTCTCCACTGCCCTTGTCTCAACCGTCGCTCAAGACCCCGCGGGTG
CTGCCCTCGTTGCCTCCCTCCGCGCCCTGGGGCCTCTCTTGCATCTCGAC
TGTAGTAACGGCAATAATGAGGTCGAGCTATTTTACCAGGCGCCTCACCC
TGCCCATCGTACAGCCAGCTGCTTGGTGGCCTTGGACGAGGCGGGCGACT
TGGTGGCGGCGGTGGCGGACATGGACATCTTTACCGACTGCCTTACGCCC
CAGCGCGTCGTAGCAGGGCTGGACGCGGCAGCTGAAGCTGCTAATATTGC
TGGCACTAGTTCTACTGGAGAGAGGTCGTCGTCATGTCATTCCCCCTCTC
TGGCCCTTGTCGTGAGCGACGGCAACTTGGCGGTGCCGGCCTTCAGGGCC
CTGGCCACAGCATGCGCCTCGCGGGGACTGCCCCTCTTGTTCGAGCCTAC
CTCGGCCAGCAAGGCCCTCCTCCCCCTTCAGGCTCGCGTCCTTCATCTTG
TCAGCCTCATGACACCCAACCTCAGGGAGCTGGATGTGCTGGCAAAGGCT
TTAAGGGAGGAAGGGGGAGGCAGGGAGACAGGTTCCCACCACGAGGTAGT
GGAGCTGGAGGAGCATCTGATAAAGGCGCTGCGGGATGGGAGTGGAGGGG
TGTCGGCAGAAGAGGAGGTTATGCAATTGCTCCGGCCTAATATAGATAGG
GTATTGGTGGGCATGACGGACGGAGTAGGAGTAGGGGCAGCAGATGGTTT
CCAAAGGAAGAGCAATGTAGAGGGATGGAAGGGCGAGAAGCACCTGCTGG
TGACGTTGGGAAAGCACGGGCTGGTCTGGGCCTCTGTGTCGGCAGCGCCA
AATGCCAACAAGGCAACAAAGACGAGAAGGGACATCAACATAAAGTACCT
GCCTATCCCCGGTGGGCAGGCGGTGGAGGCGATGGCCGACTGCACGGGTG
CGGGCGACACGTTGGTGGCAGGGATTGTGGCGGCCTTGGTTCGAGCAGTG
GAAAGAGGGATGGAAGGAGCGCTAGAGATGGGCTTGGCAGCAGCAATACA
GTCAGTTCAAGTGAATGAGGCAGTGCCGAAGCACTTGACATGGGAGGGGC
TGCAGGCGACAGTGGCGAGAGGGAGGGGGAAGGAATTTTAA

Synonyms

Publications