jgi.p|Nanoce1779_2|643084, mRNA_10160 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|643084
Unique NamemRNA_10160
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1125
Alignment locationscaffold_48:5760..7218 -

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Properties
Property NameValue
TranscriptId643170
TrackFilteredModels2
ProteinId643084
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_48supercontigscaffold_48:5760..7218 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|643084gene_10160Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|643084mRNA_10160-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10160CDS_10160Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10160 ID=mRNA_10160|Name=jgi.p|Nanoce1779_2|643084|organism=Nannochloropsis oceanica|type=mRNA|length=1125bp
ATGCAGCAGCAACAGCAGCGGCCACAGCCAGAGCAGCAGAGCCTGAGCAT
ATCTACCTTCAACATCTTGGCACCTTGCTACAAGCGGATGCAGGACGGCG
GCCGCGAGGCGGACTTCCCCGAATACATGGAGAGGCGCGCTATTGACACG
GCCACCTTCATCAGGGAAGAGCTGGACACGGACATCATCTGCCTACAAGA
GTTTTTCATGCATGATGAGGCCTACACTTCGCTTTTCCACTCCACCCTGG
CTGATGTTTACGACTTCTACTTACATCCACGACCGAGCAAGAAGGACGGG
CTGGGCGTGCTACTAAAAAAAGGCAAATTCCGCGTCCACGCTGTGCGCGG
TGCCACGCTTTCTCGCTGGGGCAGTCGGGTGGGACTACTCATGGATCTGG
AAGCCGCGGTCGACGAGAAAATGGGACAAAAGGCGACGGGGGAGGGCCAG
CGTGTAGTGTTGCTGAGCACGCACCTGTCCTTCCCGCATAACCGGTTCGA
CGAGAACCAGCAGCACCGGCAGGTTCTGAGCCTCACGCGCATGCTTGAAA
CCTACGTCAAGGGCCAGGAGGCGGTGAATGGGCGTCAGCGCATGCTGCAG
GTCCTCTGTGGCGACTTCAACGTAGACCTGACACACCCCGTTCTTGACCC
TATCCATGCCCTCGGCTTCAGGCACGTGATGGCCGCTGGCGAGAGCAGGG
GAGTAGGGGCCGAGGACGTTGGGCAGCCTCTTGTCACCCACCGCACACAC
CGTGGGGAGGATGTAGCTGTAGACCACATCTTCTTCAGAAGTTACGACTC
GACCATGGCGCGGAGGCGGCCATCAGTGGTGGGGAAGGGGGAGTTGGAGG
ATGGGAAAGTAATCAGGCCTCTGGCTACTGCCTCGTCGTCCTTCTCGTCG
TCCTTCTTGCAGAGTCTATGTCCTTCGGCGTCCTCAGTGGTGTGGGGGCG
AGAAAGAGGGGGCGCCGCAGAATGTGTGGACGCACTGCTGCCGTCGGTGG
AAGTCGTCGATGTGGCGCTGTACCCGCCTTCTTTGTGCTCGAGGAAGTGG
CCGAAAGAGTTTGGCGAGAGGATTTCTGACCATCGGCCCCTTAAGGCAGC
ACTGAATGTGACGCGAATAATGTAA
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protein sequence of jgi.p|Nanoce1779_2|643084

>mRNA_10160-protein ID=mRNA_10160-protein|Name=jgi.p|Nanoce1779_2|643084|organism=Nannochloropsis oceanica|type=polypeptide|length=375bp
MQQQQQRPQPEQQSLSISTFNILAPCYKRMQDGGREADFPEYMERRAIDT
ATFIREELDTDIICLQEFFMHDEAYTSLFHSTLADVYDFYLHPRPSKKDG
LGVLLKKGKFRVHAVRGATLSRWGSRVGLLMDLEAAVDEKMGQKATGEGQ
RVVLLSTHLSFPHNRFDENQQHRQVLSLTRMLETYVKGQEAVNGRQRMLQ
VLCGDFNVDLTHPVLDPIHALGFRHVMAAGESRGVGAEDVGQPLVTHRTH
RGEDVAVDHIFFRSYDSTMARRRPSVVGKGELEDGKVIRPLATASSSFSS
SFLQSLCPSASSVVWGRERGGAAECVDALLPSVEVVDVALYPPSLCSRKW
PKEFGERISDHRPLKAALNVTRIM*
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mRNA from alignment at scaffold_48:5760..7218-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10160 ID=mRNA_10160|Name=jgi.p|Nanoce1779_2|643084|organism=Nannochloropsis oceanica|type=mRNA|length=1459bp|location=Sequence derived from alignment at scaffold_48:5760..7218- (Nannochloropsis oceanica)
ATGCAGCAGCAACAGCAGCGGCCACAGCCAGAGCAGCAGAGCCTGAGCAT
ATCTACCTTCAACATCTTGGCACCTTGCTACAAGCGGATGCAGGACGGCG
GCCGCGAGGCGGACTTCCCCGAATACATGGAGAGGCGCGCTATTGACACG
GCCACCTTCATCAGGTGCGTAAAAATGATACAGCGCACATTTGTTGCCTG
GGCCTTTCTCTTCACTCCTTTCCCCCTGCATTCAAGTCCTATTTTAAATC
TGTTCCTCCCCCCGTCACAGGGAAGAGCTGGACACGGACATCATCTGCCT
ACAAGAGTTTTTCATGCATGATGAGGCCTACACTTCGCTTTTCCACTCCA
CCCTGGCTGATGTTTACGACTTCTACTTACATCCACGACCGAGCAAGAAG
GACGGGCTGGGCGTGCTACTAAAAAAAGGCAAATTCCGCGTCCACGCTGT
GCGCGGTGCCACGCTTTCTCGCTGGGGCAGTCGGGTGGGACTACTCATGG
ATCTGGAAGCCGCGGTCGACGAGAAAATGGGACAAAAGGCGACGGGGGAG
GGCCAGCGTGTAGTGTTGCTGAGCACGCACCTGTCCTTCCCGCATAACCG
GTTCGACGAGAACCAGCAGCACCGGCAGGTTCTGAGCCTCACGCGCATGC
TTGAAACCTACGTCAAGGGCCAGGAGGCGGTGAATGGGCGTCAGCGCATG
CTGCAGGTCCTCTGTGGCGACTTCAACGTAGACCTGACACACCCCGTTCT
TGACCCTATCCATGCCCTCGGCTTCAGGCACGTGATGGCCGCTGGCGAGA
GCAGGGGAGTAGGGGCCGAGGACGTTGGGCAGCCTCTTGTCACCCACCGC
ACACACCGTGGGGAGGATGTAGCTGTAGACCACATCTTCTTCAGAAGTTA
CGACTCGACCATGGCGCGGAGGCGGCCATCAGTGGTGGGGAAGGGGGAGT
TGGAGGATGGGAAAGTAATCAGGCCTCTGGCTACTGCCTCGTCGTCCTTC
TCGTCGTCCTTCTTGCAGAGTCTATGGTCAGGAAGAAGGGGGGCAGGAGG
TGACTCGGAGAGAGGTGAGGGACAGGAGAAGAAGGAAGAAGGCGATGGAA
AGGAAACACGAGGAGCAGCACCAGGGATAATGGGAGGTGTAGGGCAACGG
CGGTGGACAGAATTTGTGCCCGCGTCGAGCTGGTGCCGTGAAAAGAGAAG
GGAAAGGGCAATGCCGCATTCCTTCTCTTCCTTCTCCTCTCCTATTTCCC
CCAGTCCTTCGGCGTCCTCAGTGGTGTGGGGGCGAGAAAGAGGGGGCGCC
GCAGAATGTGTGGACGCACTGCTGCCGTCGGTGGAAGTCGTCGATGTGGC
GCTGTACCCGCCTTCTTTGTGCTCGAGGAAGTGGCCGAAAGAGTTTGGCG
AGAGGATTTCTGACCATCGGCCCCTTAAGGCAGCACTGAATGTGACGCGA
ATAATGTAA
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Coding sequence (CDS) from alignment at scaffold_48:5760..7218-

>mRNA_10160 ID=mRNA_10160|Name=jgi.p|Nanoce1779_2|643084|organism=Nannochloropsis oceanica|type=CDS|length=3375bp|location=Sequence derived from alignment at scaffold_48:5760..7218- (Nannochloropsis oceanica)
TCCTTCGGCGTCCTCAGTGGTGTGGGGGCGAGAAAGAGGGGGCGCCGCAG
AATGTGTGGACGCACTGCTGCCGTCGGTGGAAGTCGTCGATGTGGCGCTG
TACCCGCCTTCTTTGTGCTCGAGGAAGTGGCCGAAAGAGTTTGGCGAGAG
GATTTCTGACCATCGGCCCCTTAAGGCAGCACTGAATGTGACGCGAATAA
TGTAAGGAAGAGCTGGACACGGACATCATCTGCCTACAAGAGTTTTTCAT
GCATGATGAGGCCTACACTTCGCTTTTCCACTCCACCCTGGCTGATGTTT
ACGACTTCTACTTACATCCACGACCGAGCAAGAAGGACGGGCTGGGCGTG
CTACTAAAAAAAGGCAAATTCCGCGTCCACGCTGTGCGCGGTGCCACGCT
TTCTCGCTGGGGCAGTCGGGTGGGACTACTCATGGATCTGGAAGCCGCGG
TCGACGAGAAAATGGGACAAAAGGCGACGGGGGAGGGCCAGCGTGTAGTG
TTGCTGAGCACGCACCTGTCCTTCCCGCATAACCGGTTCGACGAGAACCA
GCAGCACCGGCAGGTTCTGAGCCTCACGCGCATGCTTGAAACCTACGTCA
AGGGCCAGGAGGCGGTGAATGGGCGTCAGCGCATGCTGCAGGTCCTCTGT
GGCGACTTCAACGTAGACCTGACACACCCCGTTCTTGACCCTATCCATGC
CCTCGGCTTCAGGCACGTGATGGCCGCTGGCGAGAGCAGGGGAGTAGGGG
CCGAGGACGTTGGGCAGCCTCTTGTCACCCACCGCACACACCGTGGGGAG
GATGTAGCTGTAGACCACATCTTCTTCAGAAGTTACGACTCGACCATGGC
GCGGAGGCGGCCATCAGTGGTGGGGAAGGGGGAGTTGGAGGATGGGAAAG
TAATCAGGCCTCTGGCTACTGCCTCGTCGTCCTTCTCGTCGTCCTTCTTG
CAGAGTCTATGATGCAGCAGCAACAGCAGCGGCCACAGCCAGAGCAGCAG
AGCCTGAGCATATCTACCTTCAACATCTTGGCACCTTGCTACAAGCGGAT
GCAGGACGGCGGCCGCGAGGCGGACTTCCCCGAATACATGGAGAGGCGCG
CTATTGACACGGCCACCTTCATCAGTCCTTCGGCGTCCTCAGTGGTGTGG
GGGCGAGAAAGAGGGGGCGCCGCAGAATGTGTGGACGCACTGCTGCCGTC
GGTGGAAGTCGTCGATGTGGCGCTGTACCCGCCTTCTTTGTGCTCGAGGA
AGTGGCCGAAAGAGTTTGGCGAGAGGATTTCTGACCATCGGCCCCTTAAG
GCAGCACTGAATGTGACGCGAATAATGTAAGGAAGAGCTGGACACGGACA
TCATCTGCCTACAAGAGTTTTTCATGCATGATGAGGCCTACACTTCGCTT
TTCCACTCCACCCTGGCTGATGTTTACGACTTCTACTTACATCCACGACC
GAGCAAGAAGGACGGGCTGGGCGTGCTACTAAAAAAAGGCAAATTCCGCG
TCCACGCTGTGCGCGGTGCCACGCTTTCTCGCTGGGGCAGTCGGGTGGGA
CTACTCATGGATCTGGAAGCCGCGGTCGACGAGAAAATGGGACAAAAGGC
GACGGGGGAGGGCCAGCGTGTAGTGTTGCTGAGCACGCACCTGTCCTTCC
CGCATAACCGGTTCGACGAGAACCAGCAGCACCGGCAGGTTCTGAGCCTC
ACGCGCATGCTTGAAACCTACGTCAAGGGCCAGGAGGCGGTGAATGGGCG
TCAGCGCATGCTGCAGGTCCTCTGTGGCGACTTCAACGTAGACCTGACAC
ACCCCGTTCTTGACCCTATCCATGCCCTCGGCTTCAGGCACGTGATGGCC
GCTGGCGAGAGCAGGGGAGTAGGGGCCGAGGACGTTGGGCAGCCTCTTGT
CACCCACCGCACACACCGTGGGGAGGATGTAGCTGTAGACCACATCTTCT
TCAGAAGTTACGACTCGACCATGGCGCGGAGGCGGCCATCAGTGGTGGGG
AAGGGGGAGTTGGAGGATGGGAAAGTAATCAGGCCTCTGGCTACTGCCTC
GTCGTCCTTCTCGTCGTCCTTCTTGCAGAGTCTATGATGCAGCAGCAACA
GCAGCGGCCACAGCCAGAGCAGCAGAGCCTGAGCATATCTACCTTCAACA
TCTTGGCACCTTGCTACAAGCGGATGCAGGACGGCGGCCGCGAGGCGGAC
TTCCCCGAATACATGGAGAGGCGCGCTATTGACACGGCCACCTTCATCAG
TCCTTCGGCGTCCTCAGTGGTGTGGGGGCGAGAAAGAGGGGGCGCCGCAG
AATGTGTGGACGCACTGCTGCCGTCGGTGGAAGTCGTCGATGTGGCGCTG
TACCCGCCTTCTTTGTGCTCGAGGAAGTGGCCGAAAGAGTTTGGCGAGAG
GATTTCTGACCATCGGCCCCTTAAGGCAGCACTGAATGTGACGCGAATAA
TGTAAGGAAGAGCTGGACACGGACATCATCTGCCTACAAGAGTTTTTCAT
GCATGATGAGGCCTACACTTCGCTTTTCCACTCCACCCTGGCTGATGTTT
ACGACTTCTACTTACATCCACGACCGAGCAAGAAGGACGGGCTGGGCGTG
CTACTAAAAAAAGGCAAATTCCGCGTCCACGCTGTGCGCGGTGCCACGCT
TTCTCGCTGGGGCAGTCGGGTGGGACTACTCATGGATCTGGAAGCCGCGG
TCGACGAGAAAATGGGACAAAAGGCGACGGGGGAGGGCCAGCGTGTAGTG
TTGCTGAGCACGCACCTGTCCTTCCCGCATAACCGGTTCGACGAGAACCA
GCAGCACCGGCAGGTTCTGAGCCTCACGCGCATGCTTGAAACCTACGTCA
AGGGCCAGGAGGCGGTGAATGGGCGTCAGCGCATGCTGCAGGTCCTCTGT
GGCGACTTCAACGTAGACCTGACACACCCCGTTCTTGACCCTATCCATGC
CCTCGGCTTCAGGCACGTGATGGCCGCTGGCGAGAGCAGGGGAGTAGGGG
CCGAGGACGTTGGGCAGCCTCTTGTCACCCACCGCACACACCGTGGGGAG
GATGTAGCTGTAGACCACATCTTCTTCAGAAGTTACGACTCGACCATGGC
GCGGAGGCGGCCATCAGTGGTGGGGAAGGGGGAGTTGGAGGATGGGAAAG
TAATCAGGCCTCTGGCTACTGCCTCGTCGTCCTTCTCGTCGTCCTTCTTG
CAGAGTCTATGATGCAGCAGCAACAGCAGCGGCCACAGCCAGAGCAGCAG
AGCCTGAGCATATCTACCTTCAACATCTTGGCACCTTGCTACAAGCGGAT
GCAGGACGGCGGCCGCGAGGCGGACTTCCCCGAATACATGGAGAGGCGCG
CTATTGACACGGCCACCTTCATCAG
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Synonyms
Publications