jgi.p|Nanoce1779_2|575037, mRNA_1016 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575037
Unique NamemRNA_1016
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length736
Alignment locationscaffold_2:1025128..1025863 +

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Properties
Property NameValue
TranscriptId575123
TrackFilteredModels2
ProteinId575037
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1025128..1025863 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575037gene_1016Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575037mRNA_1016-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1016CDS_1016Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1016 ID=mRNA_1016|Name=jgi.p|Nanoce1779_2|575037|organism=Nannochloropsis oceanica|type=mRNA|length=736bp
ACAGGGTACACGCCAAGCGACAGCAATAGTAATGTCGTCCTTGTTCAAGA
CCAATGCTGATAGCAACAAGACCGATGCCATGGCGGCCACCACAAAAGCT
CCTACTACCATTGCATTCGAGTCCAAAACGTCGACCAGCACGGCCAGCAA
CCGCAGCTTTGGCGTCCAGAAGCGCGCTCAGGAATCGCAACCGCTGCCGG
AGCAGCAGCAGCAGCAGCAGTCACCGCAAGCACCGCAGCCGAAGCAGGGT
CATCCTCAGGGAGGAGAGGACGTCTCCGGATTTGTCCGCTCCCTCCTCGA
CGAGATGCAGGGGCGCTTTGAAGCCATGCACAAACAAATGGTCTCCAAGA
TCGATTCTGTCGGGTCCAAGGTGGATGCGTTGGACGCGGAAATCACGGAA
CTTATGCGTGAAGCCGGTGTTTGTGATGTGAAAAGCGAACAGGAGCAGGA
TAGTTGGCAGATGGGGCAGGCAGGGGCGGGATATGAACCTGAGCCCATGA
AAGTGGGAAAGGCCCCGGCTGGCATGCTTGGACACGAAACGACGAGCGAG
TAGAAAGGGAGGAAAATGATCTGGGCATAGGAAGTGATGTGGATAGATGA
CGGGGATTTTTTTTAGAGATTGAGACAAGACGAGTAAAGTAAAAATACTT
CAAAATCAAACAATTGAGGAATCGCTGCCAAACGCAACCTAATCCTGTTA
TTTTTACCTCTGTGTTGCACATTCCCCTTTTTCTCC
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protein sequence of jgi.p|Nanoce1779_2|575037

>mRNA_1016-protein ID=mRNA_1016-protein|Name=jgi.p|Nanoce1779_2|575037|organism=Nannochloropsis oceanica|type=polypeptide|length=174bp
MSSLFKTNADSNKTDAMAATTKAPTTIAFESKTSTSTASNRSFGVQKRAQ
ESQPLPEQQQQQQSPQAPQPKQGHPQGGEDVSGFVRSLLDEMQGRFEAMH
KQMVSKIDSVGSKVDALDAEITELMREAGVCDVKSEQEQDSWQMGQAGAG
YEPEPMKVGKAPAGMLGHETTSE*
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mRNA from alignment at scaffold_2:1025128..1025863+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1016 ID=mRNA_1016|Name=jgi.p|Nanoce1779_2|575037|organism=Nannochloropsis oceanica|type=mRNA|length=736bp|location=Sequence derived from alignment at scaffold_2:1025128..1025863+ (Nannochloropsis oceanica)
ACAGGGTACACGCCAAGCGACAGCAATAGTAATGTCGTCCTTGTTCAAGA
CCAATGCTGATAGCAACAAGACCGATGCCATGGCGGCCACCACAAAAGCT
CCTACTACCATTGCATTCGAGTCCAAAACGTCGACCAGCACGGCCAGCAA
CCGCAGCTTTGGCGTCCAGAAGCGCGCTCAGGAATCGCAACCGCTGCCGG
AGCAGCAGCAGCAGCAGCAGTCACCGCAAGCACCGCAGCCGAAGCAGGGT
CATCCTCAGGGAGGAGAGGACGTCTCCGGATTTGTCCGCTCCCTCCTCGA
CGAGATGCAGGGGCGCTTTGAAGCCATGCACAAACAAATGGTCTCCAAGA
TCGATTCTGTCGGGTCCAAGGTGGATGCGTTGGACGCGGAAATCACGGAA
CTTATGCGTGAAGCCGGTGTTTGTGATGTGAAAAGCGAACAGGAGCAGGA
TAGTTGGCAGATGGGGCAGGCAGGGGCGGGATATGAACCTGAGCCCATGA
AAGTGGGAAAGGCCCCGGCTGGCATGCTTGGACACGAAACGACGAGCGAG
TAGAAAGGGAGGAAAATGATCTGGGCATAGGAAGTGATGTGGATAGATGA
CGGGGATTTTTTTTAGAGATTGAGACAAGACGAGTAAAGTAAAAATACTT
CAAAATCAAACAATTGAGGAATCGCTGCCAAACGCAACCTAATCCTGTTA
TTTTTACCTCTGTGTTGCACATTCCCCTTTTTCTCC
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Coding sequence (CDS) from alignment at scaffold_2:1025128..1025863+

>mRNA_1016 ID=mRNA_1016|Name=jgi.p|Nanoce1779_2|575037|organism=Nannochloropsis oceanica|type=CDS|length=522bp|location=Sequence derived from alignment at scaffold_2:1025128..1025863+ (Nannochloropsis oceanica)
ATGTCGTCCTTGTTCAAGACCAATGCTGATAGCAACAAGACCGATGCCAT
GGCGGCCACCACAAAAGCTCCTACTACCATTGCATTCGAGTCCAAAACGT
CGACCAGCACGGCCAGCAACCGCAGCTTTGGCGTCCAGAAGCGCGCTCAG
GAATCGCAACCGCTGCCGGAGCAGCAGCAGCAGCAGCAGTCACCGCAAGC
ACCGCAGCCGAAGCAGGGTCATCCTCAGGGAGGAGAGGACGTCTCCGGAT
TTGTCCGCTCCCTCCTCGACGAGATGCAGGGGCGCTTTGAAGCCATGCAC
AAACAAATGGTCTCCAAGATCGATTCTGTCGGGTCCAAGGTGGATGCGTT
GGACGCGGAAATCACGGAACTTATGCGTGAAGCCGGTGTTTGTGATGTGA
AAAGCGAACAGGAGCAGGATAGTTGGCAGATGGGGCAGGCAGGGGCGGGA
TATGAACCTGAGCCCATGAAAGTGGGAAAGGCCCCGGCTGGCATGCTTGG
ACACGAAACGACGAGCGAGTAG
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Synonyms
Publications