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Properties
| Property Name | Value |
|---|
| TranscriptId | 610045 |
| Track | FilteredModels2 |
| ProteinId | 609959 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_48 | supercontig | scaffold_48:678..3774 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10158 ID=mRNA_10158|Name=jgi.p|Nanoce1779_2|609959|organism=Nannochloropsis oceanica|type=mRNA|length=2721bp
ACAGATCTAACACATTGCAAAGGACTCTTCTTCCATTTGTGGTACCAGAA
AAGCATCGCGATGCTCTCCATCTTCCGCTTAGAACATTTCATTGCCGTCA
TATTGTCAATTGTAAGTCAATATTTGTCTGAGGGAAACGGGAGAGGGTAA
GCAGAGACAAGAGCAATGCTATCTCTGACCACGTATAATTCATTTACTAT
GATTGCTTAAATAAAGCGTTCTCTAGCCGCTGCGGGATCTTTCGAGAACT
TTACGCTTGGGACCATCAACCTGCAGCAGGGCTGGACAGTGCAAGATTCA
TTTGGGACCTCTGTCGGCACCCTTTTTGATCAAACAATCGAGGACACCCA
GAATAGCGGCCGTGTGTGGCGCATGTCAAATGCCCATACAACTTCTGGGT
TTTCCAATCATCCCTTTTCGCCCACGACAGCACAAGTGGCAGGTGAACCG
GGCAGTAGCCTTTGGAACGACTTTGGGAGCGACCATACCAAGCCTAAAAA
TCCACCGGGCTACCGAGCCAATGCCACGATCGCCACCTTCTACACGCGCG
TGAATTTCACGTCCGCCACGGGATCCCCCCAGCCGGGTCTTTCCTTGGGA
CTGTCCCTGTGTGCCAAGCAGTCAAACTGGCGCATGACCTTGATCCAGCT
GAATGACAACGGTGCGGGTATCGATATCGTTTACTGGGATAATACGGTGA
ACCAGTTTAATAACGGTTCTATATTCAGCAGCACTCGTATCGCCTCTGGC
TTATCCTACACTGCGGTTCACTCCCTGGAGATGGTTACATACTTCAAAGA
TGGATTTAATAATGACGTTGTCAATATCTTTCTGGACGGCACCCTTATTC
ATACCGGCAGCACATGGGAGGTATATTACTACTTTTTGGGAGACGTGGAC
ATCCAGCCGCGTCTTCAGGCAGTTGACTCACTTCTAGTACGATCCAGTGG
GACGGCGCAGCCAGAATACGAAGATGGAGGCTTTTTTTTTACTGAGATAG
ATGTATCCACATATATCCCTCCCGCAGTACCAGTAATACTGCCCACTCCC
GTCGGGGAAAGAGTGATTTTGCAATTTGATCTGACTGATGGCGATAGCAA
CAATGTCAGTGGACAGATTGAATTCGCCGAGGTCACCAGCCCCGGATTCA
CGACTTTTACCAATGTGAACGTCACCGCTGGTGAGGCGGATCCATTGTAT
GTGCCGCCAAGCAATTTTGTCCTCGGCACCCCTCCCATCTATATTGACAT
TTCTACCGACGCTGTCATTTCACCTCCAGTCCTTGTCTGCTTGACATACG
CAACCAGCGCCTTTCCCGAGAATACAGAACCACAAATATTTCATTTTATT
GGAGAACGGTGGGTGGATGCGACCACTCGCATCAATACGACGGCCCAAAT
TGTCTGCGGTGAGGTCCAGTCTCTTAGTCCTTTTGCGGTAGGCTCCCTTA
TCATCACGCCTGATGCTTTCGCGGTCAATCGCCTTCGACTAAAAGACAAG
CAAAACCAAAAGGATGCCTGGACTTTGTCGGGCCTATTCGAGACCGCTAA
TATCACGACCAATGATCTGCTCGAGGCTATGGACGGGAAAGGAGTCCAGT
TTGAAGTGTATGGCCAGCGGGGACTCATCAGCAGCGTAGTCTTCGAGGGC
AAAAATTGTCGTCGCATAGGGAGGTCAGCTTCTACCGAAAAGCTCTCATG
CCGTATGAAGCAGGGACAGATATCGACAACTGCTCGTGCCACCTTCAAGC
AGTACAAGCAGAGTAGCCGCCTCTTCGTTAAAGCCACATTTTCGGGATGT
ACTTTTGACATCACGACATCGCTCAGATCTCTCACCCCCTTAAAGGTCCG
AATCATAACACCAACTAGCCTTGGAGCACTTGACTCTCCTTCACTTCGCT
GCAAAGAATCCTCGTCCAGGATGCGCTGCGTTGCAGCTTAAATGGTTCGA
AACATGACGGCATTTCTTTCCCCATCCGAGCTACAATGTCTCCAAGAATC
GTGTTGACCCCAAGCCCCACATATTGTTCCTCTGTTGCCATGTCCTGTAG
TCATTCTCTGCGGCCTGTGCCCGATTGCTCGGCGCCAAATACTTTCTGTA
TAGGCCGTACGGCTTATCTTATTTGTGGTGTTTTTGTTTTATTATTGCGC
GCTTCGCGCTATTTGTTTGTTGAAGGATCTAAGAGGACTGTATGTCATGT
TCAGGAGTGAAATATGCTCTTGAAAGTTCTTCACTTCGGGATTTAAACTC
AAATCTGGGCGCAAAGGATTCTATGCCCACTGATCGGGAGGCCGGACTTC
GACGTCCTGAAATAAATAACGATGTTTCATTGATACTATTTCTCTCCAAA
GCAATCCATGGTTCACTTTGTAAATACATCTTGTTTCTCAAATTGGCTGA
TGGATGCTGGACCTGATTCCTTCTTTAACCATCTCATCAGTATTCATCGG
ACTCGAATCATATTTCCTGCTCACAAAGGCAAAAACATCGACTGCCAGTC
CCTCTTATACTGCAGTCATATAGACATCCGTTGGATCACTAACCCGAAGA
CGTCCGTCCTTTCTCATGGCAGATCCAATACGGCCGAAGGGAAAAATCAA
TTCAGCTTGTACACCACGACTGTCTTTGCTTAGATCTTTATAATAATATA
ATGCCTTATTCCAAATACAAAGAAAAGTACACCCATAAGAGGCGAGTTTC
CACACCGATGGTTATGATCAG back to topprotein sequence of jgi.p|Nanoce1779_2|609959 >mRNA_10158-protein ID=mRNA_10158-protein|Name=jgi.p|Nanoce1779_2|609959|organism=Nannochloropsis oceanica|type=polypeptide|length=523bp
MSNAHTTSGFSNHPFSPTTAQVAGEPGSSLWNDFGSDHTKPKNPPGYRAN
ATIATFYTRVNFTSATGSPQPGLSLGLSLCAKQSNWRMTLIQLNDNGAGI
DIVYWDNTVNQFNNGSIFSSTRIASGLSYTAVHSLEMVTYFKDGFNNDVV
NIFLDGTLIHTGSTWEVYYYFLGDVDIQPRLQAVDSLLVRSSGTAQPEYE
DGGFFFTEIDVSTYIPPAVPVILPTPVGERVILQFDLTDGDSNNVSGQIE
FAEVTSPGFTTFTNVNVTAGEADPLYVPPSNFVLGTPPIYIDISTDAVIS
PPVLVCLTYATSAFPENTEPQIFHFIGERWVDATTRINTTAQIVCGEVQS
LSPFAVGSLIITPDAFAVNRLRLKDKQNQKDAWTLSGLFETANITTNDLL
EAMDGKGVQFEVYGQRGLISSVVFEGKNCRRIGRSASTEKLSCRMKQGQI
STTARATFKQYKQSSRLFVKATFSGCTFDITTSLRSLTPLKVRIITPTSL
GALDSPSLRCKESSSRMRCVAA* back to topmRNA from alignment at scaffold_48:678..3774- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10158 ID=mRNA_10158|Name=jgi.p|Nanoce1779_2|609959|organism=Nannochloropsis oceanica|type=mRNA|length=3097bp|location=Sequence derived from alignment at scaffold_48:678..3774- (Nannochloropsis oceanica)
ACAGATCTAACACATTGCAAAGGACTCTTCTTCCATTTGTGGTACCAGAA
AAGCATCGCGATGCTCTCCATCTTCCGCTTAGAACATTTCATTGCCGTCA
TATTGTCAATTGTAAGTCAATATTTGTCTGAGGGAAACGGGAGAGGGTAA
GCAGAGACAAGAGCAATGCTATCTCTGACCACGTATAATTCATTTACTAT
GATTGCTTAAATAAAGCGTTCTCTAGCCGCTGCGGGATCTTTCGAGAACT
TTACGCTTGGGACCATCAACCTGCAGCAGGGCTGGACAGTGCAAGATTCA
TTTGGGACCTCTGTCGGCACCCTTTTTGATCAAACAATCGAGGACACCCA
GAATAGCGGCCGTGTGTGGCGCATGTCAAATGCCCATACAACTTCTGGGT
TTTCCAATCATCCCTTTTCGCCCACGACAGCACAAGTGGCAGGTGAACCG
GGCAGTAGCCTTTGGAACGACTTTGGGAGCGACCATACCAAGCCTAAAAA
TCCACCGGGCTACCGAGCCAATGCCACGATCGCCACCTTCTACACGCGCG
TGAATTTCACGTCCGCCACGGGATCCCCCCAGCCGGGTCTTTCCTTGGGA
CTGTCCCTGTGTGCCAAGCAGTCAAACTGGCGCATGACCTTGATCCAGCT
GAATGACAACGGTGCGGGTATCGATATCGTTTACTGGGATAATACGGTGA
ACCAGTTTAATAACGGTTCTATATTCAGCAGCACTCGTATCGCCTCTGGC
TTATCCTACACTGCGGTTCACTCCCTGGAGATGGTTACATACTTCAAAGA
TGGATTTAATAATGACGTTGTCAATATCTTTCTGGACGGCACCCTTATTC
ATACCGGCAGCACATGGGAGGTATATTACTACTTTTTGGGAGACGTGGAC
ATCCAGCCGCGTCTTCAGGCAGTTGACTCACTTCTAGTACGATCCAGTGG
GACGGCGCAGCCAGAATACGAAGATGGAGGCTTTTTTTTTACTGAGATAG
ATGTATCCACATATATCCCTCCCGCAGTACCAGTAATACTGCCCACTCCC
GTCGGGGAAAGAGTGATTTTGCAATTTGATCTGACTGATGGCGATAGCAA
CAATGTCAGTGGACAGATTGAATTCGCCGAGGTCACCAGCCCCGGATTCA
CGGTAAGCGAACACATGATGATGTGCGTAGGAAGATGCACCCTACCGGTG
CGCCCGTCTTCAGTGTAATTTCTTTGCCCATCTTACGAGTCCACCCCGAA
TACCTCGCGCTGCCGCCACTGCGGCCATTTTTATCTCCTCCTGACTCCCA
CTACTCGTCAATAACTTCTCTCTCATCGTTCAATGAACAGACTTTTACCA
ATGTGAACGTCACCGCTGGTGAGGCGGATCCATTGTATGTGCCGCCAAGC
AATTTTGTCCTCGGCACCCCTCCCATCTATATTGACATTTCTACCGACGC
TGTCATTTCACCTCCAGTCCTTGTCTGCTTGACATACGCAACCAGCGCCT
TTCCCGAGAATACAGAACCACAAATATTTCATTTTATTGGAGAACGGTGG
GTGGATGCGACCACTCGCATCAATACGACGGCCCAAATTGTCTGCGGTGA
GGTCCAGTCTCTTAGTCCTTTTGCGGTAGGCTCCCTTATCATCACGCCTG
ATGCTTTCGCGGTCAATCGCCTTCGACTAAAAGACAAGCAAAACCAAAAG
GATGCCTGGACTTTGTCGGGCCTATTCGAGACCGCTAATATCACGACCAA
TGATCTGCTCGAGGCTATGGACGGGAAAGGAGTCCAGTTTGAAGTGTATG
GCCAGCGGGGACTCATCAGCAGCGTAGTCTTCGAGGGCAAAAATTGTCGT
CGCATAGGGAGGTCAGCTTCTACCGAAAAGCTCTCATGCCGTATGAAGCA
GGGACAGATATCGACAACTGCTCGTGCCACCTTCAAGCAGTACAAGCAGA
GTAGCCGCCTCTTCGTTAAAGCCACATTTTCGGGATGTACTTTTGACATC
ACGACATCGCTCAGATCTCTCACCCCCTTAAAGGTCCGAATCATAACACC
AACTAGCCTTGGAGCACTTGACTCTCCTTCACTTCGCTGCAAAGAATCCT
CGTCCAGGATGCGCTGCGTTGCAGCTTAAATGGTTCGAAACATGACGGCA
TTTCTTTCCCCATCCGAGCTACAATGTCTCCAAGAATCGTGTTGACCCCA
AGCCCCACATATTGTTCCTCTGTTGCCATGTCCTGTAGTCATTCTCTGCG
GCCTGTGCCCGATTGCTCGGCGCCAAATACTTTCTGTATAGGCCGTACGG
CTTATCTTATTTGTGGTGTTTTTGTTTTATTATTGCGCGCTTCGCGCTAT
TTGTTTGTTGAAGGATCTAAGAGGACTGTATGTCATGTTCAGGAGTGAAA
TATGCTCTTGAAAGTTCTTCACTTCGGGATTTAAACTCAAATCTGGGCGC
AAAGGATTCTATGCCCACTGATCGGGAGGCCGGACTTCGACGTCCTGAAA
TAAATAACGATGTTTCATTGATACTATTTCTCTCCAAAGCAATCCATGGT
TCACTTTGTAAATACATCTTGTTTCTCAAATTGGCTGATGGATGCTGGAC
CTGATTCCTTCTTTAACCATCTCATCAGTATTCATCGGACTCGAATCATA
TTTCCTGCTCACAAAGGCAAAAACATCGACTGCCAGTCCCTCTTATACTG
CAGTCATATAGACATCCGTTGGATCACTAACCCGAAGACGTCCGTCCTTT
CTCATGGCAGATCCAATACGGCCGAAGGGAAAAATCAATTCAGCTTGTAC
ACCACGACTGTCTTTGCTTAGATCTTTATAATAATATGTAAGTGCTTGAG
TAGACTGATGATCAAGCGTCTTAAAAAACTTTCCTAAGACGAAGGGCACA
AAAACTCTTCTGAATTGTTTGCACGTCCACGGTCTTTGTTTTGTAATAAT
CTACATCCCCTGTCTTCATTCTAAAGTCTCATTAATACAGTAATACTCAC
CCATTTTCTTGGTCTTCTAAAACAGAATGCCTTATTCCAAATACAAAGAA
AAGTACACCCATAAGAGGCGAGTTTCCACACCGATGGTTATGATCAG back to topCoding sequence (CDS) from alignment at scaffold_48:678..3774- >mRNA_10158 ID=mRNA_10158|Name=jgi.p|Nanoce1779_2|609959|organism=Nannochloropsis oceanica|type=CDS|length=3138bp|location=Sequence derived from alignment at scaffold_48:678..3774- (Nannochloropsis oceanica)
ACTTTTACCAATGTGAACGTCACCGCTGGTGAGGCGGATCCATTGTATGT
GCCGCCAAGCAATTTTGTCCTCGGCACCCCTCCCATCTATATTGACATTT
CTACCGACGCTGTCATTTCACCTCCAGTCCTTGTCTGCTTGACATACGCA
ACCAGCGCCTTTCCCGAGAATACAGAACCACAAATATTTCATTTTATTGG
AGAACGGTGGGTGGATGCGACCACTCGCATCAATACGACGGCCCAAATTG
TCTGCGGTGAGGTCCAGTCTCTTAGTCCTTTTGCGGTAGGCTCCCTTATC
ATCACGCCTGATGCTTTCGCGGTCAATCGCCTTCGACTAAAAGACAAGCA
AAACCAAAAGGATGCCTGGACTTTGTCGGGCCTATTCGAGACCGCTAATA
TCACGACCAATGATCTGCTCGAGGCTATGGACGGGAAAGGAGTCCAGTTT
GAAGTGTATGGCCAGCGGGGACTCATCAGCAGCGTAGTCTTCGAGGGCAA
AAATTGTCGTCGCATAGGGAGGTCAGCTTCTACCGAAAAGCTCTCATGCC
GTATGAAGCAGGGACAGATATCGACAACTGCTCGTGCCACCTTCAAGCAG
TACAAGCAGAGTAGCCGCCTCTTCGTTAAAGCCACATTTTCGGGATGTAC
TTTTGACATCACGACATCGCTCAGATCTCTCACCCCCTTAAAGGTCCGAA
TCATAACACCAACTAGCCTTGGAGCACTTGACTCTCCTTCACTTCGCTGC
AAAGAATCCTCGTCCAGGATGCGCTGCGTTGCAGCTTAAATGTCAAATGC
CCATACAACTTCTGGGTTTTCCAATCATCCCTTTTCGCCCACGACAGCAC
AAGTGGCAGGTGAACCGGGCAGTAGCCTTTGGAACGACTTTGGGAGCGAC
CATACCAAGCCTAAAAATCCACCGGGCTACCGAGCCAATGCCACGATCGC
CACCTTCTACACGCGCGTGAATTTCACGTCCGCCACGGGATCCCCCCAGC
CGGGTCTTTCCTTGGGACTGTCCCTGTGTGCCAAGCAGTCAAACTGGCGC
ATGACCTTGATCCAGCTGAATGACAACGGTGCGGGTATCGATATCGTTTA
CTGGGATAATACGGTGAACCAGTTTAATAACGGTTCTATATTCAGCAGCA
CTCGTATCGCCTCTGGCTTATCCTACACTGCGGTTCACTCCCTGGAGATG
GTTACATACTTCAAAGATGGATTTAATAATGACGTTGTCAATATCTTTCT
GGACGGCACCCTTATTCATACCGGCAGCACATGGGAGGTATATTACTACT
TTTTGGGAGACGTGGACATCCAGCCGCGTCTTCAGGCAGTTGACTCACTT
CTAGTACGATCCAGTGGGACGGCGCAGCCAGAATACGAAGATGGAGGCTT
TTTTTTTACTGAGATAGATGTATCCACATATATCCCTCCCGCAGTACCAG
TAATACTGCCCACTCCCGTCGGGGAAAGAGTGATTTTGCAATTTGATCTG
ACTGATGGCGATAGCAACAATGTCAGTGGACAGATTGAATTCGCCGAGGT
CACCAGCCCCGGATTCACGACTTTTACCAATGTGAACGTCACCGCTGGTG
AGGCGGATCCATTGTATGTGCCGCCAAGCAATTTTGTCCTCGGCACCCCT
CCCATCTATATTGACATTTCTACCGACGCTGTCATTTCACCTCCAGTCCT
TGTCTGCTTGACATACGCAACCAGCGCCTTTCCCGAGAATACAGAACCAC
AAATATTTCATTTTATTGGAGAACGGTGGGTGGATGCGACCACTCGCATC
AATACGACGGCCCAAATTGTCTGCGGTGAGGTCCAGTCTCTTAGTCCTTT
TGCGGTAGGCTCCCTTATCATCACGCCTGATGCTTTCGCGGTCAATCGCC
TTCGACTAAAAGACAAGCAAAACCAAAAGGATGCCTGGACTTTGTCGGGC
CTATTCGAGACCGCTAATATCACGACCAATGATCTGCTCGAGGCTATGGA
CGGGAAAGGAGTCCAGTTTGAAGTGTATGGCCAGCGGGGACTCATCAGCA
GCGTAGTCTTCGAGGGCAAAAATTGTCGTCGCATAGGGAGGTCAGCTTCT
ACCGAAAAGCTCTCATGCCGTATGAAGCAGGGACAGATATCGACAACTGC
TCGTGCCACCTTCAAGCAGTACAAGCAGAGTAGCCGCCTCTTCGTTAAAG
CCACATTTTCGGGATGTACTTTTGACATCACGACATCGCTCAGATCTCTC
ACCCCCTTAAAGGTCCGAATCATAACACCAACTAGCCTTGGAGCACTTGA
CTCTCCTTCACTTCGCTGCAAAGAATCCTCGTCCAGGATGCGCTGCGTTG
CAGCTTAAATGTCAAATGCCCATACAACTTCTGGGTTTTCCAATCATCCC
TTTTCGCCCACGACAGCACAAGTGGCAGGTGAACCGGGCAGTAGCCTTTG
GAACGACTTTGGGAGCGACCATACCAAGCCTAAAAATCCACCGGGCTACC
GAGCCAATGCCACGATCGCCACCTTCTACACGCGCGTGAATTTCACGTCC
GCCACGGGATCCCCCCAGCCGGGTCTTTCCTTGGGACTGTCCCTGTGTGC
CAAGCAGTCAAACTGGCGCATGACCTTGATCCAGCTGAATGACAACGGTG
CGGGTATCGATATCGTTTACTGGGATAATACGGTGAACCAGTTTAATAAC
GGTTCTATATTCAGCAGCACTCGTATCGCCTCTGGCTTATCCTACACTGC
GGTTCACTCCCTGGAGATGGTTACATACTTCAAAGATGGATTTAATAATG
ACGTTGTCAATATCTTTCTGGACGGCACCCTTATTCATACCGGCAGCACA
TGGGAGGTATATTACTACTTTTTGGGAGACGTGGACATCCAGCCGCGTCT
TCAGGCAGTTGACTCACTTCTAGTACGATCCAGTGGGACGGCGCAGCCAG
AATACGAAGATGGAGGCTTTTTTTTTACTGAGATAGATGTATCCACATAT
ATCCCTCCCGCAGTACCAGTAATACTGCCCACTCCCGTCGGGGAAAGAGT
GATTTTGCAATTTGATCTGACTGATGGCGATAGCAACAATGTCAGTGGAC
AGATTGAATTCGCCGAGGTCACCAGCCCCGGATTCACG back to top
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