jgi.p|Nanoce1779_2|609026, mRNA_10157 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609026
Unique NamemRNA_10157
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1386
Alignment locationscaffold_43:179787..181444 -

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Properties
Property NameValue
TranscriptId609112
TrackFilteredModels2
ProteinId609026
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_43supercontigscaffold_43:179787..181444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609026gene_10157Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609026mRNA_10157-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10157CDS_10157Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10157 ID=mRNA_10157|Name=jgi.p|Nanoce1779_2|609026|organism=Nannochloropsis oceanica|type=mRNA|length=1386bp
CAGGCATACAAACACGGCTGCCGCTAGCCAAGACCAGCAGGGGATTTTCG
AACGGACACTACTTACAGGGCACTAGCAGCAATACCACTACCAGCACTAG
CACAAGCAGCACGACCATCATTACCGCAACAAAAATGTGTGGGCTTCTCT
CGTATTCATCGTTGGGGTCATCCTTTACCAGCCTGCAGAGTGGGGTGGGG
GCCTGGGACGACAGCAGCCGCCCTCCTCTGTCGTAGCCTCCGCGGCCAAG
CAGTAGTAACCAGCAGCATCGGTACAAAGCAAATCACCAGCAGCAGCAGC
AGCACAGCTAGTTATGGAGGATTATCACCGTTGTTGCTTTTGAAGAATGG
TCGTGCAAGCACCAGCAGTCTGAGCAGTAAAAGGTCAGCCTGTCTGAAGA
GCAGCAGCAGCAGCAACAGGAGCAGCACCAGCGGCATTGCGCTCCAAACA
TTATCAGCTACTAATACGCATCCGTCAAGCTTTGCATCTTGGCCGTCGCT
GGGGTGAAGGAGGGCAAATTGGACAACAGCACCGGGCACCAGCGACGAAG
TTTCTCAGTGCTGAAGAGAAGGGAGAGACTAACGGTGGTGGGTGGTACGT
GATCGAGGGTGTAACGGCGAGTTGGCTAGCCGTTGTATTCTCTAAATTAT
CTCTTCTTTTCTATGTCTTTATCTATCTCAGGATATGGACGAATGCCTCC
TCCATAGCAGGTTTGAGGAAGATATGCGCGACGAGCGTGGAAGGGACTTG
GCACATCAATTGTTGCCCAACGGCGATAGTGAAAGTTTTCATTATCAGCA
CCAGAAGGAGATAGGAGAGGCCCTTGGGGATGTCCGGCATCGGAGCGTTG
ACTACTTCTGGCTGGAGCTGGAGGAGGGGGAGCGTGTGCGAGTGAACTTA
CGGCCCAAAGTGGATGAATTTTTGCAACGTCTGAGTGACGAACACGATGT
GTTTATCTTCACGGCTGCCACGGAAACCTACGCATCCCCCGTACTGGACC
GTCTGGATCCCACCGGATCTTTAATCCGCGGGCGTTTTTACCGGCCTTCG
TGTTTATTCAAGAAGGGAATGTATTTGAAGGACTTGGGCAGGATCCAGAA
GGGAATCAAGAAGGAGACATTGGAAAGGGTGGTGCTGGTTGACAATAATC
CGCCCGACAATGGTATCCCTGTGCCTAGCTTCTACGACGACGTCAGTGAC
ATGGCCTTGCCCCTGGACGTGAGGCCAGTGCTACGGGAGCTGTTTGGGTT
AGAGCGCAGCTGGGGAAGGTGCGACGGCCAACTGCTGGGAGAGGACGAGG
ACGAGAAGGGAAGGAGGGTGAGAAAGAGGGAGGAGAGGAGGGGATGCAGT
GACACTCCTTTCTGGCTCTTGCTTTGGTTTGTCTGA
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protein sequence of jgi.p|Nanoce1779_2|609026

>mRNA_10157-protein ID=mRNA_10157-protein|Name=jgi.p|Nanoce1779_2|609026|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MDECLLHSRFEEDMRDERGRDLAHQLLPNGDSESFHYQHQKEIGEALGDV
RHRSVDYFWLELEEGERVRVNLRPKVDEFLQRLSDEHDVFIFTAATETYA
SPVLDRLDPTGSLIRGRFYRPSCLFKKGMYLKDLGRIQKGIKKETLERVV
LVDNNPPDNGIPVPSFYDDVSDMALPLDVRPVLRELFGLERSWGRCDGQL
LGEDEDEKGRRVRKREERRGCSDTPFWLLLWFV*
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mRNA from alignment at scaffold_43:179787..181444-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10157 ID=mRNA_10157|Name=jgi.p|Nanoce1779_2|609026|organism=Nannochloropsis oceanica|type=mRNA|length=1658bp|location=Sequence derived from alignment at scaffold_43:179787..181444- (Nannochloropsis oceanica)
CAGGCATACAAACACGGCTGCCGCTAGCCAAGACCAGCAGGGGATTTTCG
AACGGACACTACTTACAGGGCACTAGCAGCAATACCACTACCAGCACTAG
CACAAGCAGCACGACCATCATTACCGCAACAAAAATGTGTGGGCTTCTCT
CGTATTCATCGTTGGGGTCATCCTTTACCAGCCTGCAGAGTGGGGTGGGG
GCCTGGGACGACAGCAGCCGCCCTCCTCTGTCGTAGCCTCCGCGGCCAAG
CAGTAGTAACCAGCAGCATCGGTACAAAGCAAATCACCAGCAGCAGCAGC
AGCACAGCTAGTTATGGAGGATTATCACCGTTGTTGCTTTTGAAGAATGG
TCGTGCAAGCACCAGCAGTCTGAGCAGTAAAAGGTCAGCCTGTCTGAAGA
GCAGCAGCAGCAGCAACAGGAGCAGCACCAGCGGCATTGCGCTCCAAACA
TTATCAGCTACTAATACGCATCCGTCAAGCTTTGCATCTTGGCCGTCGCT
GGGGTGAAGGAGGGCAAATTGGACAACAGCACCGGGCACCAGCGACGAAG
TTTCTCAGTGCTGAAGAGAAGGGAGAGACTAACGGTGGTGGGTGGTACGT
GATCGAGGGTGTAACGGCGAGTTGGCTAGCCGTTGTATTCTCTAAATTAT
CTCTTCTTTTCTATGTCTTTATCTATCTCAGGATATGGACGAATGCCTCC
TCCATAGCAGGTTTGAGGAAGATATGCGCGACGAGCGTGGAAGGGACTTG
GCACATCAATTGTTGCCCAACGGCGATAGTGAAAGTTTTCATTATCAGCA
CCAGAAGGAGATAGGAGAGGCCCTTGGGGATGTCCGGCATCGGAGCGTTG
ACTACTTCTGGCTGGAGCTGGAGGAGGGGGAGCGTGTGCGAGGTATGTTT
GTTTGACCGTCTCCTCCATACGTCATTTAAATCCCGTTGGGGGCATATGG
AAGTATAAACCTACCTTATTCATGTGCCGATTATCTTCCTGGTGGTGGCA
TTGTGCCGTGATTTTTCCTCAGCATGTAACAAGGCGCCTCACGTTTTCCC
CTCCCTATCCCCTCCTTCCCTCCCTTCTTCCCTCCTTCCCTCTCTCCCTG
GACATGCAGTGAACTTACGGCCCAAAGTGGATGAATTTTTGCAACGTCTG
AGTGACGAACACGATGTGTTTATCTTCACGGCTGCCACGGAAACCTACGC
ATCCCCCGTACTGGACCGTCTGGATCCCACCGGATCTTTAATCCGCGGGC
GTTTTTACCGGCCTTCGTGTTTATTCAAGAAGGGAATGTATTTGAAGGAC
TTGGGCAGGATCCAGAAGGGAATCAAGAAGGAGACATTGGAAAGGGTGGT
GCTGGTTGACAATAATCCGGTCTCTTTCGTGGCCAGCCCGACAATGGTAT
CCCTGTGCCTAGCTTCTACGACGACGTCAGTGACATGGCCTTGCCCCTGG
TGAACGAGTTGATTGATGAGAATTGAGTGCTGTTGAGGACGTGAGGCCAG
TGCTACGGGAGCTGTTTGGGTTAGAGCGCAGCTGGGGAAGGTGCGACGGC
CAACTGCTGGGAGAGGACGAGGACGAGAAGGGAAGGAGGGTGAGAAAGAG
GGAGGAGAGGAGGGGATGCAGTGACACTCCTTTCTGGCTCTTGCTTTGGT
TTGTCTGA
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Coding sequence (CDS) from alignment at scaffold_43:179787..181444-

>mRNA_10157 ID=mRNA_10157|Name=jgi.p|Nanoce1779_2|609026|organism=Nannochloropsis oceanica|type=CDS|length=2808bp|location=Sequence derived from alignment at scaffold_43:179787..181444- (Nannochloropsis oceanica)
GACGTGAGGCCAGTGCTACGGGAGCTGTTTGGGTTAGAGCGCAGCTGGGG
AAGGTGCGACGGCCAACTGCTGGGAGAGGACGAGGACGAGAAGGGAAGGA
GGGTGAGAAAGAGGGAGGAGAGGAGGGGATGCAGTGACACTCCTTTCTGG
CTCTTGCTTTGGTTTGTCTGACCCGACAATGGTATCCCTGTGCCTAGCTT
CTACGACGACGTCAGTGACATGGCCTTGCCCCTGTGAACTTACGGCCCAA
AGTGGATGAATTTTTGCAACGTCTGAGTGACGAACACGATGTGTTTATCT
TCACGGCTGCCACGGAAACCTACGCATCCCCCGTACTGGACCGTCTGGAT
CCCACCGGATCTTTAATCCGCGGGCGTTTTTACCGGCCTTCGTGTTTATT
CAAGAAGGGAATGTATTTGAAGGACTTGGGCAGGATCCAGAAGGGAATCA
AGAAGGAGACATTGGAAAGGGTGGTGCTGGTTGACAATAATCCGATGGAC
GAATGCCTCCTCCATAGCAGGTTTGAGGAAGATATGCGCGACGAGCGTGG
AAGGGACTTGGCACATCAATTGTTGCCCAACGGCGATAGTGAAAGTTTTC
ATTATCAGCACCAGAAGGAGATAGGAGAGGCCCTTGGGGATGTCCGGCAT
CGGAGCGTTGACTACTTCTGGCTGGAGCTGGAGGAGGGGGAGCGTGTGCG
AGGACGTGAGGCCAGTGCTACGGGAGCTGTTTGGGTTAGAGCGCAGCTGG
GGAAGGTGCGACGGCCAACTGCTGGGAGAGGACGAGGACGAGAAGGGAAG
GAGGGTGAGAAAGAGGGAGGAGAGGAGGGGATGCAGTGACACTCCTTTCT
GGCTCTTGCTTTGGTTTGTCTGACCCGACAATGGTATCCCTGTGCCTAGC
TTCTACGACGACGTCAGTGACATGGCCTTGCCCCTGTGAACTTACGGCCC
AAAGTGGATGAATTTTTGCAACGTCTGAGTGACGAACACGATGTGTTTAT
CTTCACGGCTGCCACGGAAACCTACGCATCCCCCGTACTGGACCGTCTGG
ATCCCACCGGATCTTTAATCCGCGGGCGTTTTTACCGGCCTTCGTGTTTA
TTCAAGAAGGGAATGTATTTGAAGGACTTGGGCAGGATCCAGAAGGGAAT
CAAGAAGGAGACATTGGAAAGGGTGGTGCTGGTTGACAATAATCCGATGG
ACGAATGCCTCCTCCATAGCAGGTTTGAGGAAGATATGCGCGACGAGCGT
GGAAGGGACTTGGCACATCAATTGTTGCCCAACGGCGATAGTGAAAGTTT
TCATTATCAGCACCAGAAGGAGATAGGAGAGGCCCTTGGGGATGTCCGGC
ATCGGAGCGTTGACTACTTCTGGCTGGAGCTGGAGGAGGGGGAGCGTGTG
CGAGGACGTGAGGCCAGTGCTACGGGAGCTGTTTGGGTTAGAGCGCAGCT
GGGGAAGGTGCGACGGCCAACTGCTGGGAGAGGACGAGGACGAGAAGGGA
AGGAGGGTGAGAAAGAGGGAGGAGAGGAGGGGATGCAGTGACACTCCTTT
CTGGCTCTTGCTTTGGTTTGTCTGACCCGACAATGGTATCCCTGTGCCTA
GCTTCTACGACGACGTCAGTGACATGGCCTTGCCCCTGTGAACTTACGGC
CCAAAGTGGATGAATTTTTGCAACGTCTGAGTGACGAACACGATGTGTTT
ATCTTCACGGCTGCCACGGAAACCTACGCATCCCCCGTACTGGACCGTCT
GGATCCCACCGGATCTTTAATCCGCGGGCGTTTTTACCGGCCTTCGTGTT
TATTCAAGAAGGGAATGTATTTGAAGGACTTGGGCAGGATCCAGAAGGGA
ATCAAGAAGGAGACATTGGAAAGGGTGGTGCTGGTTGACAATAATCCGAT
GGACGAATGCCTCCTCCATAGCAGGTTTGAGGAAGATATGCGCGACGAGC
GTGGAAGGGACTTGGCACATCAATTGTTGCCCAACGGCGATAGTGAAAGT
TTTCATTATCAGCACCAGAAGGAGATAGGAGAGGCCCTTGGGGATGTCCG
GCATCGGAGCGTTGACTACTTCTGGCTGGAGCTGGAGGAGGGGGAGCGTG
TGCGAGGACGTGAGGCCAGTGCTACGGGAGCTGTTTGGGTTAGAGCGCAG
CTGGGGAAGGTGCGACGGCCAACTGCTGGGAGAGGACGAGGACGAGAAGG
GAAGGAGGGTGAGAAAGAGGGAGGAGAGGAGGGGATGCAGTGACACTCCT
TTCTGGCTCTTGCTTTGGTTTGTCTGACCCGACAATGGTATCCCTGTGCC
TAGCTTCTACGACGACGTCAGTGACATGGCCTTGCCCCTGTGAACTTACG
GCCCAAAGTGGATGAATTTTTGCAACGTCTGAGTGACGAACACGATGTGT
TTATCTTCACGGCTGCCACGGAAACCTACGCATCCCCCGTACTGGACCGT
CTGGATCCCACCGGATCTTTAATCCGCGGGCGTTTTTACCGGCCTTCGTG
TTTATTCAAGAAGGGAATGTATTTGAAGGACTTGGGCAGGATCCAGAAGG
GAATCAAGAAGGAGACATTGGAAAGGGTGGTGCTGGTTGACAATAATCCG
ATGGACGAATGCCTCCTCCATAGCAGGTTTGAGGAAGATATGCGCGACGA
GCGTGGAAGGGACTTGGCACATCAATTGTTGCCCAACGGCGATAGTGAAA
GTTTTCATTATCAGCACCAGAAGGAGATAGGAGAGGCCCTTGGGGATGTC
CGGCATCGGAGCGTTGACTACTTCTGGCTGGAGCTGGAGGAGGGGGAGCG
TGTGCGAG
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Synonyms
Publications