jgi.p|Nanoce1779_2|674431, mRNA_10155 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|674431
Unique NamemRNA_10155
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1354
Alignment locationscaffold_43:176155..177678 +

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Properties
Property NameValue
TranscriptId674517
TrackFilteredModels2
ProteinId674431
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_43supercontigscaffold_43:176155..177678 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674431gene_10155Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674431mRNA_10155-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10155CDS_10155Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10155 ID=mRNA_10155|Name=jgi.p|Nanoce1779_2|674431|organism=Nannochloropsis oceanica|type=mRNA|length=1354bp
AACAACAGGACCAATCTCCTACCATGCGAGGTGACCACAATAACGGCAAC
AGTCCCATCTACTCCAGCCATTGTGGCAGCGGTGACAGCGATGGCAGCGA
AACCCTGTGGGGAAACGAGACCCAAGCCGCGTACGTACAAGCCGCGCTCC
TCCTGGACGCGTGCAGCTGTAGCTTCACTACCACCGGCGGCAGCAGCAAG
TGCTGTGTCCCTACTGCTGAAGCACTCAAGCGTCATCTCACCTCTCCATG
CGCCGTGGCCTCTGGGGGTTACCCCCACCTGCAGCACCTGCCTACCGAGC
CCGCCTCCAAGCAACAACACCACGCACAACACCATACACGACAATCGCCA
CAACAACAGCACTGTCAATAACAAACCCTTGCCTTTTTTAACCATCGATA
CGGGACTTTGCGACCCCTATACCTATTTGCACTGTGGTGTCGACGCAGTC
GTCTCGCCCACCTTCCCTTCGCCCTCGTCCTCACACCCTTCCTCCACCAC
CTCCTCCTCTTCAACCTCCTCCTCCTGCTGGATGTCATCCCCCTGTACGG
TCCCAAGCAGCTCCCCTTGTATCCATTTCACCGAAACCGCCCACCTCTGC
AACAGCAGCAGAAGGAGGACGAGGAAGCAGCAGCAGCAGCAGCAGCCGTA
GGAATAATGCCCACAACAACGACATTAATTCCGGTCTAGCCCCGCTAACG
ATCACTATCCCCTCCTCTCCTTTCACTTCCTTCCAGCCGTTACACTCCCT
GCTTTCCCCTACACTCCCAACGGTCCTACCTCCTCCTGGCCCCCATCGGC
GACTCCAACCACTGCAAGCCCCAGACCCACGTCATGGTCGCCCGGCCTTT
CCCCCCTCCCTCCTCCTCTTCCCTCTCCTCCTCCTCTGACAAGAAGGTTG
CCATCAGATCGTGCAACGGGCATGGGTCCACCGACATGCTGCTGCTGGAC
GTGCTGCTTGTTCTTCGTCCTCCATCCCTTCCACCCTCCTTCCAGGCCAT
CATGTTGGAGAATTGACAGCACTGGAACTATTGGCGCGAAGCCCGACCCA
TCCGAATGTGATGCCTTTGCTGGAAGCGATGGAAGATGAGGAGTTCCTTT
ATCTTGTCTTCCCCTTCGCCGAGGGGGGGCGAGCTGTTTGATGCGTTGTG
GCCCAATCCCAACGGCCTGCCCGAGCTTAACGTCCAGCAGTTCTTCTACC
AGCTGTGCCAAGGGCTAATGCACATGAAAAACACGGGCTGAGCCACGGAG
ACGTCTCCTTGGAGAATGTGATGCTTTACGACCCGACCACTACTAGCAGC
AGCAGCAGCAGCAAAAACAAGAGGAGGAAGAGCGCTGCGGCTGGTGCTGC
AGAG
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protein sequence of jgi.p|Nanoce1779_2|674431

>mRNA_10155-protein ID=mRNA_10155-protein|Name=jgi.p|Nanoce1779_2|674431|organism=Nannochloropsis oceanica|type=polypeptide|length=187bp
MAAKPCGETRPKPRTYKPRSSWTRAAVASLPPAAAASAVSLLLKHSSVIS
PLHAPWPLGVTPTCSTCLPSPPPSNNTTHNTIHDNRHNNSTVNNKPLPFL
TIDTGLCDPYTYLHCGVDAVVSPTFPSPSSSHPSSTTSSSSTSSSCWMSS
PCTVPSSSPCIHFTETAHLCNSSRRRTRKQQQQQQP*
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mRNA from alignment at scaffold_43:176155..177678+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10155 ID=mRNA_10155|Name=jgi.p|Nanoce1779_2|674431|organism=Nannochloropsis oceanica|type=mRNA|length=1524bp|location=Sequence derived from alignment at scaffold_43:176155..177678+ (Nannochloropsis oceanica)
AACAACAGGACCAATCTCCTACCATGCGAGGTGACCACAATAACGGCAAC
AGTCCCATCTACTCCAGCCATTGTGGCAGCGGTGACAGCGATGGCAGCGA
AACCCTGTGGGGAAACGAGACCCAAGCCGCGTACGTACAAGCCGCGCTCC
TCCTGGACGCGTGCAGCTGTAGCTTCACTACCACCGGCGGCAGCAGCAAG
TGCTGTGTCCCTACTGCTGAAGCACTCAAGCGTCATCTCACCTCTCCATG
CGCCGTGGCCTCTGGGGGTTACCCCCACCTGCAGCACCTGCCTACCGAGC
CCGCCTCCAAGCAACAACACCACGCACAACACCATACACGACAATCGCCA
CAACAACAGCACTGTCAATAACAAACCCTTGCCTTTTTTAACCATCGATA
CGGGACTTTGCGACCCCTATACCTATTTGCACTGTGGTGTCGACGCAGTC
GTCTCGCCCACCTTCCCTTCGCCCTCGTCCTCACACCCTTCCTCCACCAC
CTCCTCCTCTTCAACCTCCTCCTCCTGCTGGATGTCATCCCCCTGTACGG
TCCCAAGCAGCTCCCCTTGTATCCATTTCACCGAAACCGCCCACCTCTGC
AACAGCAGCAGAAGGAGGACGAGGAAGCAGCAGCAGCAGCAGCAGCCGTA
GGAATAATGCCCACAACAACGACATTAATTCCGGTCTAGCCCCGCTAACG
ATCACTATCCCCTCCTCTCCTTTCACTTCCTTCCAGCCGTTACACTCCCT
GCTTTCCCCTACACTCCCAACGGTCCTACCTCCTCCTGGCCCCCATCGGC
GACTCCAACCACTGCAAGCCCCAGACCCACGTCATGGTCGCCCGGCCTTT
CCCCCCTCCCTCCTCCTCTTCCCTCTCCTCCTCCTCTGACAAGAAGGTTG
CCATCAGATCGTGCAACGGGCATGGGTCCACCGACATGCTGCTGCTGGAC
GTGCTGCTTGTTCTTCGTCCTCCATCCCTTCCACCCTCCTTCCAGGCCAT
CATGTTGGAGAATTGACAGCACTGGAACTATTGGCGCGAAGCCCGACCCA
TCCGAATGTGATGCCTTTGCTGGAAGCGATGGAAGATGAGGTAGGCTAGG
GCGCTCTCCCTCCCTCCTTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTTCCTCCCACTTCTCTCTTTTCCTCCATACTGATTCAGCACT
ACATGTGCCTTATCTTCCTCCTTCCCTCCTTCCTTCCTTCCCTCCCTTCC
GCACGTCCAGGAGTTCCTTTATCTTGTCTTCCCCTTCGCCGAGGGGGGGC
GAGCTGTTTGATGCGTTGTGGCCCAATCCCAACGGCCTGCCCGAGCTTAA
CGTCCAGCAGTTCTTCTACCAGCTGTGCCAAGGGCTAATGCACATGAAAA
ACACGGGCTGAGCCACGGAGACGTCTCCTTGGAGAATGTGATGCTTTACG
ACCCGACCACTACTAGCAGCAGCAGCAGCAGCAAAAACAAGAGGAGGAAG
AGCGCTGCGGCTGGTGCTGCAGAG
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Coding sequence (CDS) from alignment at scaffold_43:176155..177678+

>mRNA_10155 ID=mRNA_10155|Name=jgi.p|Nanoce1779_2|674431|organism=Nannochloropsis oceanica|type=CDS|length=561bp|location=Sequence derived from alignment at scaffold_43:176155..177678+ (Nannochloropsis oceanica)
ATGGCAGCGAAACCCTGTGGGGAAACGAGACCCAAGCCGCGTACGTACAA
GCCGCGCTCCTCCTGGACGCGTGCAGCTGTAGCTTCACTACCACCGGCGG
CAGCAGCAAGTGCTGTGTCCCTACTGCTGAAGCACTCAAGCGTCATCTCA
CCTCTCCATGCGCCGTGGCCTCTGGGGGTTACCCCCACCTGCAGCACCTG
CCTACCGAGCCCGCCTCCAAGCAACAACACCACGCACAACACCATACACG
ACAATCGCCACAACAACAGCACTGTCAATAACAAACCCTTGCCTTTTTTA
ACCATCGATACGGGACTTTGCGACCCCTATACCTATTTGCACTGTGGTGT
CGACGCAGTCGTCTCGCCCACCTTCCCTTCGCCCTCGTCCTCACACCCTT
CCTCCACCACCTCCTCCTCTTCAACCTCCTCCTCCTGCTGGATGTCATCC
CCCTGTACGGTCCCAAGCAGCTCCCCTTGTATCCATTTCACCGAAACCGC
CCACCTCTGCAACAGCAGCAGAAGGAGGACGAGGAAGCAGCAGCAGCAGC
AGCAGCCGTAG
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Synonyms
Publications