jgi.p|Nanoce1779_2|311582, mRNA_10153 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|311582
Unique NamemRNA_10153
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length883
Alignment locationscaffold_43:173253..174342 -

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Properties
Property NameValue
TranscriptId311668
TrackFilteredModels2
ProteinId311582
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_43supercontigscaffold_43:173253..174342 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|311582gene_10153Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|311582mRNA_10153-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10153CDS_10153Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10153 ID=mRNA_10153|Name=jgi.p|Nanoce1779_2|311582|organism=Nannochloropsis oceanica|type=mRNA|length=883bp
ACAGGTGCACATAGCGGCGGCTGTGGAAAGTAGGCTCTGAGGCGTGGTGG
GGCTTCGAGAGAGCGCAACTCGAGAGACGAAAAATGGTTTTACGCACAGA
GGAGCTGAGTGTGCGCATCACGATCCTATGTCAAAATTTTACAAGCCAGG
GTAGCAGGGCAAGAAACCTTGACACTCTCGTGCCCCACATCGACACACTC
TCTGTCCTTCACTCCTTCCCTCCCCGTACGCAAAAGTCAACTCCTCTCCC
ACCTTAACTTCCCTGCTGGTAAAGAGGCATAGGCGGGGCAACAACCCCCC
GTCTCTGACGCAGGCTATCTTTAGATTGGGCGCACAGGAGTGGTTAAAAA
AACGAGATACGTTCCCCTTCTGGGTGGCGTCAAGGGAGGTACGAAGGAGG
AAGCATGACCCCTCCTCCAGAAGGGTTAGAAGGTAGTTGTGCTGCTCCTG
CTTCGGCGGCTGCCGCAATTGTTGCTGTATGCGCGATTGCTCCTCCGCTC
CCCGGTCTTTAGTACCGGCAGCAACTACAGCAGAGTTGGCGTGTGCATGA
GAATGAGCGAGGGAAGGAGAGCAAGCCATCTGCTTGTCGTAGAGAGCCAA
ACGATGACGGGCCTCCTCGGTTCCAATTAACTCCCCTACGTACTCGGCCA
CAAATGTATCGGGGAGCATTGGAGGCGTCGTTGATTCTCTTTGTGGTGTG
GCGACTGATTCGGTGGGCCCGGCGAAAGCATGGGCAGGAGGCATCCTGGC
AACAAGACGGGATACCACCATCACTACATTGTTGTTGGCAATCGCTGCTG
CTGTTGCTGTTGCTGTTGCTGTTGCTGTTGTTGCTAGGCTCACCACAATT
ACAACCCCCCCCAACCTCCCCCTCCTCCTCTTC
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protein sequence of jgi.p|Nanoce1779_2|311582

>mRNA_10153-protein ID=mRNA_10153-protein|Name=jgi.p|Nanoce1779_2|311582|organism=Nannochloropsis oceanica|type=polypeptide|length=76bp
MYRGALEASLILFVVWRLIRWARRKHGQEASWQQDGIPPSLHCCWQSLLL
LLLLLLLLLLLGSPQLQPPPTSPSSS
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mRNA from alignment at scaffold_43:173253..174342-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10153 ID=mRNA_10153|Name=jgi.p|Nanoce1779_2|311582|organism=Nannochloropsis oceanica|type=mRNA|length=1090bp|location=Sequence derived from alignment at scaffold_43:173253..174342- (Nannochloropsis oceanica)
ACAGGTGCACATAGCGGCGGCTGTGGAAAGTAGGCTCTGAGGCGTGGTGG
GGCTTCGAGAGAGCGCAACTCGAGAGACGAAAAATGGTTTTACGCACAGA
GGAGCTGAGTGTGCGCATCACGATCCTATGTCAAAATTTTACAAGCCAGG
GTAGCAGGGCAAGAAACCTTGACACTCTCGTGCCCCACATCGACACACTC
TCTGTCCTTCACTCCTTCCCTCCCCGTACGCAAAAGTCAACTCCTCTCCC
ACCTTAACTTCCCTGCTGGTAAAGAGGCATAGGCGGGGCAACAACCCCCC
GTCTCTGACGCAGGCTATCTTTAGATTGGGCGCACAGGAGTGGTTAAAAA
AACGAGATACGTTCCCCTTCTGGGTGGCGTCAAGGGAGGTACGAAGGAGG
AAGCATGACCCCTCCTCCAGAAGGGTTAGAAGGTAGTTGTGCTGCTCCTG
CTTCGGCGGCTGCCGCAATTGTTGCTGTATGCGCGATTGCTCCTCCGCTC
CCCGGTCTTTAGTACCGGCAGCAACTACAGCAGAGTTGGCGTGTGCATGA
GAATGAGCGAGGGAAGGAGAGCAAGCCATCTGCTTGTCGTAGAGAGCCAA
ACGATGACGGGCCTCCTCGGTTCCAATTAACTCCCCTACGTACTCGGCCA
CAAATGTATCGGGAGGGAGGGAGGGAAGGAAGGAGGGGGGGGGGGGTGAA
GAAGACACCCCAGCCCTTGCCGGTGGTGTATCGGAGTTGAAGGACTGGGG
GAGGACGGATTTGGGTGGGACGGAGGCTGCAACGCTTGGTGGGGCAACGG
CAGCGGGCGGAACATTCAAACTCAAATGTCGACAGGGGTAGAAGGGAGGA
GGAGAGCGGCTGCCTTGAGGGAGCATTGGAGGCGTCGTTGATTCTCTTTG
TGGTGTGGCGACTGATTCGGTGGGCCCGGCGAAAGCATGGGCAGGAGGCA
TCCTGGCAACAAGACGGGATACCACCATCACTACATTGTTGTTGGCAATC
GCTGCTGCTGTTGCTGTTGCTGTTGCTGTTGCTGTTGTTGCTAGGCTCAC
CACAATTACAACCCCCCCCAACCTCCCCCTCCTCCTCTTC
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Coding sequence (CDS) from alignment at scaffold_43:173253..174342-

>mRNA_10153 ID=mRNA_10153|Name=jgi.p|Nanoce1779_2|311582|organism=Nannochloropsis oceanica|type=CDS|length=460bp|location=Sequence derived from alignment at scaffold_43:173253..174342- (Nannochloropsis oceanica)
GGAGCATTGGAGGCGTCGTTGATTCTCTTTGTGGTGTGGCGACTGATTCG
GTGGGCCCGGCGAAAGCATGGGCAGGAGGCATCCTGGCAACAAGACGGGA
TACCACCATCACTACATTGTTGTTGGCAATCGCTGCTGCTGTTGCTGTTG
CTGTTGCTGTTGCTGTTGTTGCTAGGCTCACCACAATTACAACCCCCCCC
AACCTCCCCCTCCTCCTCTTCATGTATCGGGGAGCATTGGAGGCGTCGTT
GATTCTCTTTGTGGTGTGGCGACTGATTCGGTGGGCCCGGCGAAAGCATG
GGCAGGAGGCATCCTGGCAACAAGACGGGATACCACCATCACTACATTGT
TGTTGGCAATCGCTGCTGCTGTTGCTGTTGCTGTTGCTGTTGCTGTTGTT
GCTAGGCTCACCACAATTACAACCCCCCCCAACCTCCCCCTCCTCCTCTT
CATGTATCGG
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Synonyms
Publications