jgi.p|Nanoce1779_2|575032, mRNA_1015 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575032
Unique NamemRNA_1015
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1778
Alignment locationscaffold_2:1021559..1023336 -

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Properties
Property NameValue
TranscriptId575118
TrackFilteredModels2
ProteinId575032
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1021559..1023336 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575032gene_1015Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575032mRNA_1015-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1015CDS_1015Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1015 ID=mRNA_1015|Name=jgi.p|Nanoce1779_2|575032|organism=Nannochloropsis oceanica|type=mRNA|length=1778bp
CCCTCTCCTCCTCCTCCCTCCATGGTGTTGTTTGGTGCTGCTGCTAGCAG
CAGCAGTAGTAACAGCAGCAGCAGCGGCAGCAGCAGCAGCAGTAGCTGTA
GCGGGATGACGACGTCGAAGCGCAACCGTAGCGCTTCTGTCGGTGTCATG
CCCGTTGGCTGGCTCAGACGGAATAGCAGCAGAAACAACGATAACAAGAA
GAGTGATAAAGGTAGCAACCATGAAGCTCGAAGGAAAAACGGGACTAGCA
GTGAGATTGAGACGTATGGGATTGTTGTGTGGGTTTTGGACGTGGAAAGT
GGGCAGGAGTGGAGGGTTAGAAAGGGGCCGCTGGAGTTCTTGGCATTACA
TGAGGTGGTTTCTATGTTGAGACCTGAGAGCTTTTGGACGGAAGGAGCGG
CCTTTCCCTTGAAAAGACACAAGAACGAGACGAGACCACCGAGTGTGGAG
AAGCAGGCGAAACTTGAGAAATATTTGAGGCGGTTGGCCGAGGTGATGGA
TGTGATGTCCTCTGGGGTTGCGTCGTCCTCCTCTTCCTCGTCCTCAGGAG
CAGGAGGAGATAGGAGAGCAGAGGTGGTGATATCTCCACTTGAGGGTGCA
TTTGAAGTGGCCAAGACATTGCAAGATTTTGTGGGGGCGACGGAGAGGGT
GGATGAGTTGGAGAAGATAATGCATTCGGCAGCAAGGGGGAATCCGAGGA
GGCACTTAGGGCTTCAGGTCCAACTGCAGACTGTCGAGATTTTGCGCAGG
GGTGGTGGAAGAGGAGAAAAAGGGATGAATTGGCAAGGGAAGTTGGATGC
GTTTGTGGAGGAGGCGAATAAATGTGATGTGCAGAAGACAGACCTGTTGA
AGGCTTATTCTCTTTTTCTTGGGAGCGTTTCAAGGGAGATACTTAATGAA
GCCCCGCATGGTGATGCGTTGAGAGGTTTGGTCAGAATAAATCTGGCTTC
GCCCACGTTGGCTAGTGGCAGTGGAGAGATTGACGAGACGGAGGTGGATC
GGTTGTGTTTATCGGCTGTGAGAAGGGTGTTGGAAGCCGAGACGTTTTTG
CCCCTGCGTTTGCGGCTGTATGACAGGGTGATGCTCGAGACGGACATGGC
GCAAGAGAAGCAGTTGGCCCGGAAATGCGCCCTTTTCAAATCACGGCCTC
AATCATTTTTTGGTATCCCTGTAGAGAATATTTCAATTTCGTCGTGGGAG
ACAGCGACGGAGCACCTCCGCCGCTTGAGTGGGGAGGTGACGACCTTGCC
GTCGGATAAGCTGGACACACTGGTGGCGGCGGTTCGGGAGGTACATGCAT
GTTACCGAAGGGAGCATGGGGAAGTGGCAGGGTTGCATTTGGGGGCGGAT
ATGTTCCTCCCGGTGTTTATTTATGTGGTGAGCCAGTGTGGGATCTCGCG
GTTGTTGAGCCTGAAGAATCTGTTGGGAGGCTTGGTTGATCCGAGTCGGA
TGATGTCGGAGGCGGGGTATTGCTTGGCATCGTTGGAAGGGGCGATTGAG
TATTTGTTGCGGTTGGATGAGACGGCGGAAGAGATTTAGAGGAAGCAAAC
AGAGATCGTGGATGTGAGTCGTATAGTAGTGGAAGTGGTAGTATGTAGAT
TGAAACGTTTGAGTTTGTTTGCGCTGGAAAGGAGGTCGGGAATGAACAGT
CTTTGTGAAGAGTGTAACATGGACAGGCCACGCCCACACCTTGTGCTGCT
TGTGTCAAGGAAAAAGGTGCCTGGATTTATTGAACAGGAAATGAACGTGT
AAACAAAAGAATTAGACAGTAATCACAT
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protein sequence of jgi.p|Nanoce1779_2|575032

>mRNA_1015-protein ID=mRNA_1015-protein|Name=jgi.p|Nanoce1779_2|575032|organism=Nannochloropsis oceanica|type=polypeptide|length=506bp
MVLFGAAASSSSSNSSSSGSSSSSSCSGMTTSKRNRSASVGVMPVGWLRR
NSSRNNDNKKSDKGSNHEARRKNGTSSEIETYGIVVWVLDVESGQEWRVR
KGPLEFLALHEVVSMLRPESFWTEGAAFPLKRHKNETRPPSVEKQAKLEK
YLRRLAEVMDVMSSGVASSSSSSSSGAGGDRRAEVVISPLEGAFEVAKTL
QDFVGATERVDELEKIMHSAARGNPRRHLGLQVQLQTVEILRRGGGRGEK
GMNWQGKLDAFVEEANKCDVQKTDLLKAYSLFLGSVSREILNEAPHGDAL
RGLVRINLASPTLASGSGEIDETEVDRLCLSAVRRVLEAETFLPLRLRLY
DRVMLETDMAQEKQLARKCALFKSRPQSFFGIPVENISISSWETATEHLR
RLSGEVTTLPSDKLDTLVAAVREVHACYRREHGEVAGLHLGADMFLPVFI
YVVSQCGISRLLSLKNLLGGLVDPSRMMSEAGYCLASLEGAIEYLLRLDE
TAEEI*
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mRNA from alignment at scaffold_2:1021559..1023336-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1015 ID=mRNA_1015|Name=jgi.p|Nanoce1779_2|575032|organism=Nannochloropsis oceanica|type=mRNA|length=1778bp|location=Sequence derived from alignment at scaffold_2:1021559..1023336- (Nannochloropsis oceanica)
CCCTCTCCTCCTCCTCCCTCCATGGTGTTGTTTGGTGCTGCTGCTAGCAG
CAGCAGTAGTAACAGCAGCAGCAGCGGCAGCAGCAGCAGCAGTAGCTGTA
GCGGGATGACGACGTCGAAGCGCAACCGTAGCGCTTCTGTCGGTGTCATG
CCCGTTGGCTGGCTCAGACGGAATAGCAGCAGAAACAACGATAACAAGAA
GAGTGATAAAGGTAGCAACCATGAAGCTCGAAGGAAAAACGGGACTAGCA
GTGAGATTGAGACGTATGGGATTGTTGTGTGGGTTTTGGACGTGGAAAGT
GGGCAGGAGTGGAGGGTTAGAAAGGGGCCGCTGGAGTTCTTGGCATTACA
TGAGGTGGTTTCTATGTTGAGACCTGAGAGCTTTTGGACGGAAGGAGCGG
CCTTTCCCTTGAAAAGACACAAGAACGAGACGAGACCACCGAGTGTGGAG
AAGCAGGCGAAACTTGAGAAATATTTGAGGCGGTTGGCCGAGGTGATGGA
TGTGATGTCCTCTGGGGTTGCGTCGTCCTCCTCTTCCTCGTCCTCAGGAG
CAGGAGGAGATAGGAGAGCAGAGGTGGTGATATCTCCACTTGAGGGTGCA
TTTGAAGTGGCCAAGACATTGCAAGATTTTGTGGGGGCGACGGAGAGGGT
GGATGAGTTGGAGAAGATAATGCATTCGGCAGCAAGGGGGAATCCGAGGA
GGCACTTAGGGCTTCAGGTCCAACTGCAGACTGTCGAGATTTTGCGCAGG
GGTGGTGGAAGAGGAGAAAAAGGGATGAATTGGCAAGGGAAGTTGGATGC
GTTTGTGGAGGAGGCGAATAAATGTGATGTGCAGAAGACAGACCTGTTGA
AGGCTTATTCTCTTTTTCTTGGGAGCGTTTCAAGGGAGATACTTAATGAA
GCCCCGCATGGTGATGCGTTGAGAGGTTTGGTCAGAATAAATCTGGCTTC
GCCCACGTTGGCTAGTGGCAGTGGAGAGATTGACGAGACGGAGGTGGATC
GGTTGTGTTTATCGGCTGTGAGAAGGGTGTTGGAAGCCGAGACGTTTTTG
CCCCTGCGTTTGCGGCTGTATGACAGGGTGATGCTCGAGACGGACATGGC
GCAAGAGAAGCAGTTGGCCCGGAAATGCGCCCTTTTCAAATCACGGCCTC
AATCATTTTTTGGTATCCCTGTAGAGAATATTTCAATTTCGTCGTGGGAG
ACAGCGACGGAGCACCTCCGCCGCTTGAGTGGGGAGGTGACGACCTTGCC
GTCGGATAAGCTGGACACACTGGTGGCGGCGGTTCGGGAGGTACATGCAT
GTTACCGAAGGGAGCATGGGGAAGTGGCAGGGTTGCATTTGGGGGCGGAT
ATGTTCCTCCCGGTGTTTATTTATGTGGTGAGCCAGTGTGGGATCTCGCG
GTTGTTGAGCCTGAAGAATCTGTTGGGAGGCTTGGTTGATCCGAGTCGGA
TGATGTCGGAGGCGGGGTATTGCTTGGCATCGTTGGAAGGGGCGATTGAG
TATTTGTTGCGGTTGGATGAGACGGCGGAAGAGATTTAGAGGAAGCAAAC
AGAGATCGTGGATGTGAGTCGTATAGTAGTGGAAGTGGTAGTATGTAGAT
TGAAACGTTTGAGTTTGTTTGCGCTGGAAAGGAGGTCGGGAATGAACAGT
CTTTGTGAAGAGTGTAACATGGACAGGCCACGCCCACACCTTGTGCTGCT
TGTGTCAAGGAAAAAGGTGCCTGGATTTATTGAACAGGAAATGAACGTGT
AAACAAAAGAATTAGACAGTAATCACAT
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Coding sequence (CDS) from alignment at scaffold_2:1021559..1023336-

>mRNA_1015 ID=mRNA_1015|Name=jgi.p|Nanoce1779_2|575032|organism=Nannochloropsis oceanica|type=CDS|length=1518bp|location=Sequence derived from alignment at scaffold_2:1021559..1023336- (Nannochloropsis oceanica)
ATGGTGTTGTTTGGTGCTGCTGCTAGCAGCAGCAGTAGTAACAGCAGCAG
CAGCGGCAGCAGCAGCAGCAGTAGCTGTAGCGGGATGACGACGTCGAAGC
GCAACCGTAGCGCTTCTGTCGGTGTCATGCCCGTTGGCTGGCTCAGACGG
AATAGCAGCAGAAACAACGATAACAAGAAGAGTGATAAAGGTAGCAACCA
TGAAGCTCGAAGGAAAAACGGGACTAGCAGTGAGATTGAGACGTATGGGA
TTGTTGTGTGGGTTTTGGACGTGGAAAGTGGGCAGGAGTGGAGGGTTAGA
AAGGGGCCGCTGGAGTTCTTGGCATTACATGAGGTGGTTTCTATGTTGAG
ACCTGAGAGCTTTTGGACGGAAGGAGCGGCCTTTCCCTTGAAAAGACACA
AGAACGAGACGAGACCACCGAGTGTGGAGAAGCAGGCGAAACTTGAGAAA
TATTTGAGGCGGTTGGCCGAGGTGATGGATGTGATGTCCTCTGGGGTTGC
GTCGTCCTCCTCTTCCTCGTCCTCAGGAGCAGGAGGAGATAGGAGAGCAG
AGGTGGTGATATCTCCACTTGAGGGTGCATTTGAAGTGGCCAAGACATTG
CAAGATTTTGTGGGGGCGACGGAGAGGGTGGATGAGTTGGAGAAGATAAT
GCATTCGGCAGCAAGGGGGAATCCGAGGAGGCACTTAGGGCTTCAGGTCC
AACTGCAGACTGTCGAGATTTTGCGCAGGGGTGGTGGAAGAGGAGAAAAA
GGGATGAATTGGCAAGGGAAGTTGGATGCGTTTGTGGAGGAGGCGAATAA
ATGTGATGTGCAGAAGACAGACCTGTTGAAGGCTTATTCTCTTTTTCTTG
GGAGCGTTTCAAGGGAGATACTTAATGAAGCCCCGCATGGTGATGCGTTG
AGAGGTTTGGTCAGAATAAATCTGGCTTCGCCCACGTTGGCTAGTGGCAG
TGGAGAGATTGACGAGACGGAGGTGGATCGGTTGTGTTTATCGGCTGTGA
GAAGGGTGTTGGAAGCCGAGACGTTTTTGCCCCTGCGTTTGCGGCTGTAT
GACAGGGTGATGCTCGAGACGGACATGGCGCAAGAGAAGCAGTTGGCCCG
GAAATGCGCCCTTTTCAAATCACGGCCTCAATCATTTTTTGGTATCCCTG
TAGAGAATATTTCAATTTCGTCGTGGGAGACAGCGACGGAGCACCTCCGC
CGCTTGAGTGGGGAGGTGACGACCTTGCCGTCGGATAAGCTGGACACACT
GGTGGCGGCGGTTCGGGAGGTACATGCATGTTACCGAAGGGAGCATGGGG
AAGTGGCAGGGTTGCATTTGGGGGCGGATATGTTCCTCCCGGTGTTTATT
TATGTGGTGAGCCAGTGTGGGATCTCGCGGTTGTTGAGCCTGAAGAATCT
GTTGGGAGGCTTGGTTGATCCGAGTCGGATGATGTCGGAGGCGGGGTATT
GCTTGGCATCGTTGGAAGGGGCGATTGAGTATTTGTTGCGGTTGGATGAG
ACGGCGGAAGAGATTTAG
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Synonyms
Publications