jgi.p|Nanoce1779_2|609000, mRNA_10148 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|609000
Unique Name	mRNA_10148
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2428
Alignment location	scaffold_43:159732..162159 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	609086
Track	FilteredModels2
ProteinId	609000

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_43	supercontig	scaffold_43:159732..162159 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609000	gene_10148	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609000	mRNA_10148-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10148	CDS_10148	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_43:159732..162159+
coding sequence from alignment at scaffold_43:159732..162159+

mRNA sequence

>mRNA_10148 ID=mRNA_10148|Name=jgi.p|Nanoce1779_2|609000|organism=Nannochloropsis oceanica|type=mRNA|length=2428bp
CCTCCTCTTCCTCCTCCTCCTCCAATCCTTTTTCCCATCTTTCCTCCGAT
TCTCCCCTGGGCGAGTTGGCAGCGACCCACATTCTTGCAATGGCAGCCCC
CAACAGCAGCAGCAGCAGCAACAACAACAACAGCAACAACACCACCACCG
CCACCATCACTACCAGTAGCAGTACAAGCCTTCCTCCCGTCATGCCTGTG
CTTGACGCGCTGGCGGACGATACCTTCTTGTATTTATTCTTCCCCTACGC
GTCAGGAGGGGATCTCTTCGACGCTCTGGCAGGGACGACGGAAGGGATGG
AGGAAGAGGTCGCTAGGTCTTATTTTACGGATGTTGTACAGGGGTTACAA
TTTTTAAAAATAAACGGCATGACGCATGGAGATGTGAGCTTGGAAAACGT
GGTGGTGTGTGAGGAGGAGGAGGATAAGGATAAGAAGAAGATGTGGGAGA
AAGGGAGTAATGGAAATGGGGAGGAGGAAGAGGAGCGACAGAAAAGGAAC
AAAAGCGAGAAATGTGGGAAAAAGGTCTGTCGGTTGATTGATTTGGAAAT
GGCAAGGTTTTGGCCCGAGGAAGAAATGCGGGCGGTGCATTGGAGGTCAA
GGACAGGACTAAGGAGCGTGGATGGGAAAAAGGGGTATATGCCGCCGGAG
TGTGTAAATGGAACGGTGCTTGATTGGTTGGCGGCGGATATTTGGTCCCT
GGGAATATGTCTTTACATGATGCTGACGCGGCACCCGCTGTACCTCGATC
CGGGGGAAGTGGTATTTGCGCTCCTTTGTCAGGGGGAGGCGCGGAGGGTG
ATTGAGTTCTATAGCACTGAGCACGGATTGGTGCTGCCGGCAGCAGCGGC
CGAGTTGATTGAGTGGATGTTAAGTCCACGCCCAGAGGAAAGGCCGACAC
TAGAGCAGGTTTTGGAGCATGCTTGGGTTAAGGGAGAAGGGAGGGGTCGA
CGGGTGGTGGAGGAGGAGGAGGAGGGAGGAAGGACGAGATATGTTCAGCC
GTCGTCGCCGGTTGCATGGGTCGGGGTAGAGGAAGATTCGGCGGTGATTT
TGGGGTCACCGGATACGAGTTTTGGGAGTATTGACAGTGTTCATAGCACT
TATAGTGCTGGTGGGGAGGGTGAAAGTAGAAATACCTCTGACGGCGATGA
GGTGTGGGGATTTTATCAGATCTGCCCGGCAGGAAAAGGGAGAAAGGGAC
TCTCAGGGCAATAACTGCAGTAAGAGCAGCCGCAGTAGCATTGGCCTAAT
TCTATACTGCAAGTAAGGTTTCCAAAGGCGAACAGGAGGGAAGGAAGGAA
GGACGTCCTCAATCTCCCTTGAAATAGAGGAGACGAAAATGACGACCTGT
TTCTCCTTTCTCCTGCCATCTTTCCATCCATCTTTCCCTGCGTCTTACTC
TCATTTCGTGACCCGGGATTATTACTTGATTCGGAAAAGAAATTAACGAC
CGAGCAATCGAGATGATTAGAAGGTAGGTGCTGAATGGCAGAATAACGAA
AACGAAGACATAAACGAACAAAAGGTTGAAAAGAGAATTTGCATCCATGT
ATTGTATGATTGAGAGCACGTACAGAAAGATATAGTAGTCAGGAAGAGCA
AGATGAGCAAGGGTTTATAGGGGGTCTTCTCAGACAGGTTTATTGGGGAA
CCCCCCCCGAGATATCTATGAGTATGTAATTATGAGGAGCTAGAGGGAGT
ACCATTGGAGAGGGTCAGTGAGAAAAGGGAGGGTCGAATTCGATCAAGTA
TCGTATGATCGCCGTTTAGACAAATGCGTGGTTTAATACAATCGTATCGT
GTGGGCACGGCACAAACAATGTATTGTGAACCCGAAAGCGAGAGCTAGAA
CAAGTGAAAAATTGTATGAGGACATGGAAGAAAACTCCTAAACACATTGC
ACGTGTGTATCTGTCGAATCGTAGAAGAAATAAGAAATGCACTCGGGAAA
CACGAATAGACATGTGCCAGGAAGCAAAGAAATGGGGTTGAAAAAGGGCG
TGATTGCTGCTCCTTGGGTGAGGTTTTACCGAGTGTGACATGGCCGCTAG
CCCACCCTCCTCCTTCCAACCTCATTCGATCCTGCCAAAAAGATACAGCC
CTGTAGACAAAGGACACTAAAGAGGGAAAAGGAGGAAAGTTAGAGGGACA
AGAGGGAGGACAAAGATGTGTACGACACCATTTCGGCACAGGCAATGGAT
GTAAGTATGAACAGTAAAAACAAGAAGGGAATCCGAGCAAGATGTCTTTC
GTCTAAGTGGTGGATGGGATCGCCCTGGGATAAGTTGAAGTGACAATCGC
TAGGAAAACCACGACCATCCCTAGCCTTAATCTCCCCTTACCCGCTGTCC
GCTTCATCCATGACAAGAGCAAGAACAAGAATAAGAACGACAACGAGTAA
AAAAAAAGAAACAAGTAATGACATGGGC

protein sequence of jgi.p|Nanoce1779_2|609000

>mRNA_10148-protein ID=mRNA_10148-protein|Name=jgi.p|Nanoce1779_2|609000|organism=Nannochloropsis oceanica|type=polypeptide|length=375bp
MAAPNSSSSSNNNNSNNTTTATITTSSSTSLPPVMPVLDALADDTFLYLF
FPYASGGDLFDALAGTTEGMEEEVARSYFTDVVQGLQFLKINGMTHGDVS
LENVVVCEEEEDKDKKKMWEKGSNGNGEEEEERQKRNKSEKCGKKVCRLI
DLEMARFWPEEEMRAVHWRSRTGLRSVDGKKGYMPPECVNGTVLDWLAAD
IWSLGICLYMMLTRHPLYLDPGEVVFALLCQGEARRVIEFYSTEHGLVLP
AAAAELIEWMLSPRPEERPTLEQVLEHAWVKGEGRGRRVVEEEEEGGRTR
YVQPSSPVAWVGVEEDSAVILGSPDTSFGSIDSVHSTYSAGGEGESRNTS
DGDEVWGFYQICPAGKGRKGLSGQ*

mRNA from alignment at scaffold_43:159732..162159+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10148 ID=mRNA_10148|Name=jgi.p|Nanoce1779_2|609000|organism=Nannochloropsis oceanica|type=mRNA|length=2428bp|location=Sequence derived from alignment at scaffold_43:159732..162159+ (Nannochloropsis oceanica)
CCTCCTCTTCCTCCTCCTCCTCCAATCCTTTTTCCCATCTTTCCTCCGAT
TCTCCCCTGGGCGAGTTGGCAGCGACCCACATTCTTGCAATGGCAGCCCC
CAACAGCAGCAGCAGCAGCAACAACAACAACAGCAACAACACCACCACCG
CCACCATCACTACCAGTAGCAGTACAAGCCTTCCTCCCGTCATGCCTGTG
CTTGACGCGCTGGCGGACGATACCTTCTTGTATTTATTCTTCCCCTACGC
GTCAGGAGGGGATCTCTTCGACGCTCTGGCAGGGACGACGGAAGGGATGG
AGGAAGAGGTCGCTAGGTCTTATTTTACGGATGTTGTACAGGGGTTACAA
TTTTTAAAAATAAACGGCATGACGCATGGAGATGTGAGCTTGGAAAACGT
GGTGGTGTGTGAGGAGGAGGAGGATAAGGATAAGAAGAAGATGTGGGAGA
AAGGGAGTAATGGAAATGGGGAGGAGGAAGAGGAGCGACAGAAAAGGAAC
AAAAGCGAGAAATGTGGGAAAAAGGTCTGTCGGTTGATTGATTTGGAAAT
GGCAAGGTTTTGGCCCGAGGAAGAAATGCGGGCGGTGCATTGGAGGTCAA
GGACAGGACTAAGGAGCGTGGATGGGAAAAAGGGGTATATGCCGCCGGAG
TGTGTAAATGGAACGGTGCTTGATTGGTTGGCGGCGGATATTTGGTCCCT
GGGAATATGTCTTTACATGATGCTGACGCGGCACCCGCTGTACCTCGATC
CGGGGGAAGTGGTATTTGCGCTCCTTTGTCAGGGGGAGGCGCGGAGGGTG
ATTGAGTTCTATAGCACTGAGCACGGATTGGTGCTGCCGGCAGCAGCGGC
CGAGTTGATTGAGTGGATGTTAAGTCCACGCCCAGAGGAAAGGCCGACAC
TAGAGCAGGTTTTGGAGCATGCTTGGGTTAAGGGAGAAGGGAGGGGTCGA
CGGGTGGTGGAGGAGGAGGAGGAGGGAGGAAGGACGAGATATGTTCAGCC
GTCGTCGCCGGTTGCATGGGTCGGGGTAGAGGAAGATTCGGCGGTGATTT
TGGGGTCACCGGATACGAGTTTTGGGAGTATTGACAGTGTTCATAGCACT
TATAGTGCTGGTGGGGAGGGTGAAAGTAGAAATACCTCTGACGGCGATGA
GGTGTGGGGATTTTATCAGATCTGCCCGGCAGGAAAAGGGAGAAAGGGAC
TCTCAGGGCAATAACTGCAGTAAGAGCAGCCGCAGTAGCATTGGCCTAAT
TCTATACTGCAAGTAAGGTTTCCAAAGGCGAACAGGAGGGAAGGAAGGAA
GGACGTCCTCAATCTCCCTTGAAATAGAGGAGACGAAAATGACGACCTGT
TTCTCCTTTCTCCTGCCATCTTTCCATCCATCTTTCCCTGCGTCTTACTC
TCATTTCGTGACCCGGGATTATTACTTGATTCGGAAAAGAAATTAACGAC
CGAGCAATCGAGATGATTAGAAGGTAGGTGCTGAATGGCAGAATAACGAA
AACGAAGACATAAACGAACAAAAGGTTGAAAAGAGAATTTGCATCCATGT
ATTGTATGATTGAGAGCACGTACAGAAAGATATAGTAGTCAGGAAGAGCA
AGATGAGCAAGGGTTTATAGGGGGTCTTCTCAGACAGGTTTATTGGGGAA
CCCCCCCCGAGATATCTATGAGTATGTAATTATGAGGAGCTAGAGGGAGT
ACCATTGGAGAGGGTCAGTGAGAAAAGGGAGGGTCGAATTCGATCAAGTA
TCGTATGATCGCCGTTTAGACAAATGCGTGGTTTAATACAATCGTATCGT
GTGGGCACGGCACAAACAATGTATTGTGAACCCGAAAGCGAGAGCTAGAA
CAAGTGAAAAATTGTATGAGGACATGGAAGAAAACTCCTAAACACATTGC
ACGTGTGTATCTGTCGAATCGTAGAAGAAATAAGAAATGCACTCGGGAAA
CACGAATAGACATGTGCCAGGAAGCAAAGAAATGGGGTTGAAAAAGGGCG
TGATTGCTGCTCCTTGGGTGAGGTTTTACCGAGTGTGACATGGCCGCTAG
CCCACCCTCCTCCTTCCAACCTCATTCGATCCTGCCAAAAAGATACAGCC
CTGTAGACAAAGGACACTAAAGAGGGAAAAGGAGGAAAGTTAGAGGGACA
AGAGGGAGGACAAAGATGTGTACGACACCATTTCGGCACAGGCAATGGAT
GTAAGTATGAACAGTAAAAACAAGAAGGGAATCCGAGCAAGATGTCTTTC
GTCTAAGTGGTGGATGGGATCGCCCTGGGATAAGTTGAAGTGACAATCGC
TAGGAAAACCACGACCATCCCTAGCCTTAATCTCCCCTTACCCGCTGTCC
GCTTCATCCATGACAAGAGCAAGAACAAGAATAAGAACGACAACGAGTAA
AAAAAAAGAAACAAGTAATGACATGGGC

Coding sequence (CDS) from alignment at scaffold_43:159732..162159+

>mRNA_10148 ID=mRNA_10148|Name=jgi.p|Nanoce1779_2|609000|organism=Nannochloropsis oceanica|type=CDS|length=1125bp|location=Sequence derived from alignment at scaffold_43:159732..162159+ (Nannochloropsis oceanica)
ATGGCAGCCCCCAACAGCAGCAGCAGCAGCAACAACAACAACAGCAACAA
CACCACCACCGCCACCATCACTACCAGTAGCAGTACAAGCCTTCCTCCCG
TCATGCCTGTGCTTGACGCGCTGGCGGACGATACCTTCTTGTATTTATTC
TTCCCCTACGCGTCAGGAGGGGATCTCTTCGACGCTCTGGCAGGGACGAC
GGAAGGGATGGAGGAAGAGGTCGCTAGGTCTTATTTTACGGATGTTGTAC
AGGGGTTACAATTTTTAAAAATAAACGGCATGACGCATGGAGATGTGAGC
TTGGAAAACGTGGTGGTGTGTGAGGAGGAGGAGGATAAGGATAAGAAGAA
GATGTGGGAGAAAGGGAGTAATGGAAATGGGGAGGAGGAAGAGGAGCGAC
AGAAAAGGAACAAAAGCGAGAAATGTGGGAAAAAGGTCTGTCGGTTGATT
GATTTGGAAATGGCAAGGTTTTGGCCCGAGGAAGAAATGCGGGCGGTGCA
TTGGAGGTCAAGGACAGGACTAAGGAGCGTGGATGGGAAAAAGGGGTATA
TGCCGCCGGAGTGTGTAAATGGAACGGTGCTTGATTGGTTGGCGGCGGAT
ATTTGGTCCCTGGGAATATGTCTTTACATGATGCTGACGCGGCACCCGCT
GTACCTCGATCCGGGGGAAGTGGTATTTGCGCTCCTTTGTCAGGGGGAGG
CGCGGAGGGTGATTGAGTTCTATAGCACTGAGCACGGATTGGTGCTGCCG
GCAGCAGCGGCCGAGTTGATTGAGTGGATGTTAAGTCCACGCCCAGAGGA
AAGGCCGACACTAGAGCAGGTTTTGGAGCATGCTTGGGTTAAGGGAGAAG
GGAGGGGTCGACGGGTGGTGGAGGAGGAGGAGGAGGGAGGAAGGACGAGA
TATGTTCAGCCGTCGTCGCCGGTTGCATGGGTCGGGGTAGAGGAAGATTC
GGCGGTGATTTTGGGGTCACCGGATACGAGTTTTGGGAGTATTGACAGTG
TTCATAGCACTTATAGTGCTGGTGGGGAGGGTGAAAGTAGAAATACCTCT
GACGGCGATGAGGTGTGGGGATTTTATCAGATCTGCCCGGCAGGAAAAGG
GAGAAAGGGACTCTCAGGGCAATAA

Synonyms

Publications