jgi.p|Nanoce1779_2|311183, mRNA_10143 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|311183
Unique Name	mRNA_10143
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2075
Alignment location	scaffold_43:133198..135425 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	311269
Track	FilteredModels2
ProteinId	311183

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_43	supercontig	scaffold_43:133198..135425 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|311183	gene_10143	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|311183	mRNA_10143-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10143	CDS_10143	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_43:133198..135425+
coding sequence from alignment at scaffold_43:133198..135425+

mRNA sequence

>mRNA_10143 ID=mRNA_10143|Name=jgi.p|Nanoce1779_2|311183|organism=Nannochloropsis oceanica|type=mRNA|length=2075bp
GCTGTGACCGCATCATTCCTTGTCCCAGGTATGACTCTCCTCAAATGGGA
CTGGTTGTCTTTGATTTGACATTTGGTGGCAGGACATACGTGCCACGCCC
GCACTTTCAAAATTCTACGACCAATACCTGTATGTGCTGTGTAAAGACCT
GGTCAAATAGCGATCAATTAGGGTTCACTTCCCTCTCGTATATACAGATG
TCAGCGCATGGGTTTGGAGTGCGTGCCGCAATCTCGCGGACGTGGCCGGC
CTCGCGTGATCAAGTCAGAGGGGGGCGGCGGCTCGGGTTCAGGTGACCAG
GCGAGCGCCAGGCCTGCAAGCGGCGCAGCAAATCCCGGCGGTCTCAGTGC
GACCATGACACGGAGGCCCACTCGTAGGATGGTACCGGCACGTTGGACAT
CAGCGGGGGCCTCGTCAAAGGCGTTTGGGGGACTGCAGCAGGAGCAGGGT
GGTGAGACGGCGGGGCGGGGTGAGGAGCAGCTGTTTCGCAATCGACACAA
TCAGCAGCAGCGCCAGGAGAGGCCTCACGGGGCAACGAATAATTTTGCGG
CAGCAAGAACGCAGGTATGCCATGAGAAAGAGCAAGGGGCCGAGGCCGAG
GTGCAGAAAGAAAAGGAGGGAAGCTCTACTTGGCGAGCAGGAAGGGATGG
AGGTGGAGACTACAAATATCGCGCCAGGATGGCGCAGGAGAGAGTTCAAG
GTGGTGGCGGAGCCGCATGGGGAACAAGCTCGTTTTCCTCCGCATCCTCG
GCAGCCAATCCCTCCTCCCCGTCATCGTCATCATCTTCTTCAAAAAGCAG
TAGAATCCTCAGACTCCCTCGCTATCGCAAATCCGACCGCGGAAACTTGC
TCCTGGAAGTCAGTGAAGCTAAGTTTTTCAATCCTGTCATGGCGCACGCA
GCCACGGGAATGCTGATCGCAGCCATCAATCGTGTGCGGGTGGCAGGGAA
ACTCTGCCAAAGGAAAGCCCACGCGCTGTTGCGAACTCTCGGAGCACGCG
CGATGCGTCGGCCTGACTACGCTGGGCGCGAGCTGCTGGAGATGTTATCT
GCTATGCTCAAGATAGGGGACTGGGCCGAGCACCTTTTTGGTCCCAAGGC
CTCGATGCCACCCCTGGTGCCGCTGCGCCCCGGATCAGGTGTGAGGAGGG
GTCATGGAGAGGGCGTGGGGGAGCGTGCTGGTGGTGGGAGCAGAGCGGGG
GACGCCGGTGACAGACAGTCCATGCTCTCGCCGCTGCCACAAACCGAGCA
GCGGGACCCGGCGCCGCAGCAGGATTTCTTACCCCTGCCTTTACACGAGG
TGGAACGCGCTCAGCTCGCCGAAGTAGAAGCAGACCTCAAGTCGGACCTG
TTGTGGACTGTGACGGATGGTGTCCCCCATTCGTACGCCGTGACCACCGC
GGGACTTTCGTTGATCCGTGCCTCGGAAGAATTCACCGAGCTTTTCCCTG
TGCGGGACAGAAGCAAGATGGTGGAAGGCAGTCGACAAGAGGCGGTGTTA
CCTTGTTTCCTGTGGGCGAGCCGTCTAGTCCCGGCGGACCAGTTGGGTTT
TTTTGATACGTTGGCTTCGACCCTCCTAACGACGGGGGGGCGAGAGAAGA
TGTCGATGGTAGGAAAGTGTGTCGATGGGAGAGGCAAGATTTTCTTGGCA
TTGATTCGATACCAGTTGATGATGCGAAAGGAAGGGAGAGACGCAATGGA
GGCTTTCTCATGCCAGCGGTTGCCGCCTTCGCAGCATGTGGTACCATCGA
GCGAAGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGTGGAGGAGGAGGAA
GAGGAAGAGGAGGAGGAATGGGAAGAGCGAAGGGAGGAGGATGAGAGAAA
CGGATGAGGATGAGAGAAACGGATGAACAATCAAGATGGAGCGCAGGAAG
GACACTCCGTTTACGGTTGTTGGACCAGCAAGTGCTTCTCCTTTAGAGGA
GCCGGCCAAAAATACGACATGCGAGAGAAACACAGACAAGATGAAGCGAA
AATACAGCGGTTAAAAAAACAGATTTATAATAATGACAGTAACGGACAAA
ATTTGAAAGCGAGTAAGTTTTTGAG

protein sequence of jgi.p|Nanoce1779_2|311183

>mRNA_10143-protein ID=mRNA_10143-protein|Name=jgi.p|Nanoce1779_2|311183|organism=Nannochloropsis oceanica|type=polypeptide|length=550bp
MGLECVPQSRGRGRPRVIKSEGGGGSGSGDQASARPASGAANPGGLSATM
TRRPTRRMVPARWTSAGASSKAFGGLQQEQGGETAGRGEEQLFRNRHNQQ
QRQERPHGATNNFAAARTQVCHEKEQGAEAEVQKEKEGSSTWRAGRDGGG
DYKYRARMAQERVQGGGGAAWGTSSFSSASSAANPSSPSSSSSSSKSSRI
LRLPRYRKSDRGNLLLEVSEAKFFNPVMAHAATGMLIAAINRVRVAGKLC
QRKAHALLRTLGARAMRRPDYAGRELLEMLSAMLKIGDWAEHLFGPKASM
PPLVPLRPGSGVRRGHGEGVGERAGGGSRAGDAGDRQSMLSPLPQTEQRD
PAPQQDFLPLPLHEVERAQLAEVEADLKSDLLWTVTDGVPHSYAVTTAGL
SLIRASEEFTELFPVRDRSKMVEGSRQEAVLPCFLWASRLVPADQLGFFD
TLASTLLTTGGREKMSMVGKCVDGRGKIFLALIRYQLMMRKEGRDAMEAF
SCQRLPPSQHVVPSSEEEEEEEEEEEVEEEEEEEEEEWEERREEDERNG*

mRNA from alignment at scaffold_43:133198..135425+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10143 ID=mRNA_10143|Name=jgi.p|Nanoce1779_2|311183|organism=Nannochloropsis oceanica|type=mRNA|length=2228bp|location=Sequence derived from alignment at scaffold_43:133198..135425+ (Nannochloropsis oceanica)
GCTGTGACCGCATCATTCCTTGTCCCAGGTATGACTCTCCTCAAATGGGA
CTGGTTGTCTTTGATTTGACATTTGGTGGCAGGACATACGTGCCACGCCC
GCACTTTCAAAATTCTACGACCAATACCTGTATGTGCTGTGTAAAGACCT
GGTCAAATAGCGATCAATTAGGGTTCACTTCCCTCTCGTATATACAGATG
TCAGCGCATGGGTTTGGAGTGCGTGCCGCAATCTCGCGGACGTGGCCGGC
CTCGCGTGATCAAGTCAGGTACGGGGTGGCTGAGACCCGTCTATGTGGGC
AAAGTGTTAGATTAAAAATAGCGAACCCTTGTGTTGTACGCATTTTTACC
CTCCAAACCCACGCTGACTGAATTCATTTGCATAAAACCTCTTTCAAATG
CTCACACATACACCCGAACAGAGGGGGGCGGCGGCTCGGGTTCAGGTGAC
CAGGCGAGCGCCAGGCCTGCAAGCGGCGCAGCAAATCCCGGCGGTCTCAG
TGCGACCATGACACGGAGGCCCACTCGTAGGATGGTACCGGCACGTTGGA
CATCAGCGGGGGCCTCGTCAAAGGCGTTTGGGGGACTGCAGCAGGAGCAG
GGTGGTGAGACGGCGGGGCGGGGTGAGGAGCAGCTGTTTCGCAATCGACA
CAATCAGCAGCAGCGCCAGGAGAGGCCTCACGGGGCAACGAATAATTTTG
CGGCAGCAAGAACGCAGGTATGCCATGAGAAAGAGCAAGGGGCCGAGGCC
GAGGTGCAGAAAGAAAAGGAGGGAAGCTCTACTTGGCGAGCAGGAAGGGA
TGGAGGTGGAGACTACAAATATCGCGCCAGGATGGCGCAGGAGAGAGTTC
AAGGTGGTGGCGGAGCCGCATGGGGAACAAGCTCGTTTTCCTCCGCATCC
TCGGCAGCCAATCCCTCCTCCCCGTCATCGTCATCATCTTCTTCAAAAAG
CAGTAGAATCCTCAGACTCCCTCGCTATCGCAAATCCGACCGCGGAAACT
TGCTCCTGGAAGTCAGTGAAGCTAAGTTTTTCAATCCTGTCATGGCGCAC
GCAGCCACGGGAATGCTGATCGCAGCCATCAATCGTGTGCGGGTGGCAGG
GAAACTCTGCCAAAGGAAAGCCCACGCGCTGTTGCGAACTCTCGGAGCAC
GCGCGATGCGTCGGCCTGACTACGCTGGGCGCGAGCTGCTGGAGATGTTA
TCTGCTATGCTCAAGATAGGGGACTGGGCCGAGCACCTTTTTGGTCCCAA
GGCCTCGATGCCACCCCTGGTGCCGCTGCGCCCCGGATCAGGTGTGAGGA
GGGGTCATGGAGAGGGCGTGGGGGAGCGTGCTGGTGGTGGGAGCAGAGCG
GGGGACGCCGGTGACAGACAGTCCATGCTCTCGCCGCTGCCACAAACCGA
GCAGCGGGACCCGGCGCCGCAGCAGGATTTCTTACCCCTGCCTTTACACG
AGGTGGAACGCGCTCAGCTCGCCGAAGTAGAAGCAGACCTCAAGTCGGAC
CTGTTGTGGACTGTGACGGATGGTGTCCCCCATTCGTACGCCGTGACCAC
CGCGGGACTTTCGTTGATCCGTGCCTCGGAAGAATTCACCGAGCTTTTCC
CTGTGCGGGACAGAAGCAAGATGGTGGAAGGCAGTCGACAAGAGGCGGTG
TTACCTTGTTTCCTGTGGGCGAGCCGTCTAGTCCCGGCGGACCAGTTGGG
TTTTTTTGATACGTTGGCTTCGACCCTCCTAACGACGGGGGGGCGAGAGA
AGATGTCGATGGTAGGAAAGTGTGTCGATGGGAGAGGCAAGATTTTCTTG
GCATTGATTCGATACCAGTTGATGATGCGAAAGGAAGGGAGAGACGCAAT
GGAGGCTTTCTCATGCCAGCGGTTGCCGCCTTCGCAGCATGTGGTACCAT
CGAGCGAAGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGTGGAGGAGGAG
GAAGAGGAAGAGGAGGAGGAATGGGAAGAGCGAAGGGAGGAGGATGAGAG
AAACGGATGAGGATGAGAGAAACGGATGAACAATCAAGATGGAGCGCAGG
AAGGACACTCCGTTTACGGTTGTTGGACCAGCAAGTGCTTCTCCTTTAGA
GGAGCCGGCCAAAAATACGACATGCGAGAGAAACACAGACAAGATGAAGC
GAAAATACAGCGGTTAAAAAAACAGATTTATAATAATGACAGTAACGGAC
AAAATTTGAAAGCGAGTAAGTTTTTGAG

Coding sequence (CDS) from alignment at scaffold_43:133198..135425+

>mRNA_10143 ID=mRNA_10143|Name=jgi.p|Nanoce1779_2|311183|organism=Nannochloropsis oceanica|type=CDS|length=3300bp|location=Sequence derived from alignment at scaffold_43:133198..135425+ (Nannochloropsis oceanica)
ATGGGTTTGGAGTGCGTGCCGCAATCTCGCGGACGTGGCCGGCCTCGCGT
GATCAAGTCAGAGGGGGGCGGCGGCTCGGGTTCAGGTGACCAGGCGAGCG
CCAGGCCTGCAAGCGGCGCAGCAAATCCCGGCGGTCTCAGTGCGACCATG
ACACGGAGGCCCACTCGTAGGATGGTACCGGCACGTTGGACATCAGCGGG
GGCCTCGTCAAAGGCGTTTGGGGGACTGCAGCAGGAGCAGGGTGGTGAGA
CGGCGGGGCGGGGTGAGGAGCAGCTGTTTCGCAATCGACACAATCAGCAG
CAGCGCCAGGAGAGGCCTCACGGGGCAACGAATAATTTTGCGGCAGCAAG
AACGCAGGTATGCCATGAGAAAGAGCAAGGGGCCGAGGCCGAGGTGCAGA
AAGAAAAGGAGGGAAGCTCTACTTGGCGAGCAGGAAGGGATGGAGGTGGA
GACTACAAATATCGCGCCAGGATGGCGCAGGAGAGAGTTCAAGGTGGTGG
CGGAGCCGCATGGGGAACAAGCTCGTTTTCCTCCGCATCCTCGGCAGCCA
ATCCCTCCTCCCCGTCATCGTCATCATCTTCTTCAAAAAGCAGTAGAATC
CTCAGACTCCCTCGCTATCGCAAATCCGACCGCGGAAACTTGCTCCTGGA
AGTCAGTGAAGCTAAGTTTTTCAATCCTGTCATGGCGCACGCAGCCACGG
GAATGCTGATCGCAGCCATCAATCGTGTGCGGGTGGCAGGGAAACTCTGC
CAAAGGAAAGCCCACGCGCTGTTGCGAACTCTCGGAGCACGCGCGATGCG
TCGGCCTGACTACGCTGGGCGCGAGCTGCTGGAGATGTTATCTGCTATGC
TCAAGATAGGGGACTGGGCCGAGCACCTTTTTGGTCCCAAGGCCTCGATG
CCACCCCTGGTGCCGCTGCGCCCCGGATCAGGTGTGAGGAGGGGTCATGG
AGAGGGCGTGGGGGAGCGTGCTGGTGGTGGGAGCAGAGCGGGGGACGCCG
GTGACAGACAGTCCATGCTCTCGCCGCTGCCACAAACCGAGCAGCGGGAC
CCGGCGCCGCAGCAGGATTTCTTACCCCTGCCTTTACACGAGGTGGAACG
CGCTCAGCTCGCCGAAGTAGAAGCAGACCTCAAGTCGGACCTGTTGTGGA
CTGTGACGGATGGTGTCCCCCATTCGTACGCCGTGACCACCGCGGGACTT
TCGTTGATCCGTGCCTCGGAAGAATTCACCGAGCTTTTCCCTGTGCGGGA
CAGAAGCAAGATGGTGGAAGGCAGTCGACAAGAGGCGGTGTTACCTTGTT
TCCTGTGGGCGAGCCGTCTAGTCCCGGCGGACCAGTTGGGTTTTTTTGAT
ACGTTGGCTTCGACCCTCCTAACGACGGGGGGGCGAGAGAAGATGTCGAT
GGTAGGAAAGTGTGTCGATGGGAGAGGCAAGATTTTCTTGGCATTGATTC
GATACCAGTTGATGATGCGAAAGGAAGGGAGAGACGCAATGGAGGCTTTC
TCATGCCAGCGGTTGCCGCCTTCGCAGCATGTGGTACCATCGAGCGAAGA
GGAGGAGGAGGAGGAGGAGGAAGAGGAGGTGGAGGAGGAGGAAGAGGAAG
AGGAGGAGGAATGGGAAGAGCGAAGGGAGGAGGATGAGAGAAACGGATGA
ATGGGTTTGGAGTGCGTGCCGCAATCTCGCGGACGTGGCCGGCCTCGCGT
GATCAAGTCAGAGGGGGGCGGCGGCTCGGGTTCAGGTGACCAGGCGAGCG
CCAGGCCTGCAAGCGGCGCAGCAAATCCCGGCGGTCTCAGTGCGACCATG
ACACGGAGGCCCACTCGTAGGATGGTACCGGCACGTTGGACATCAGCGGG
GGCCTCGTCAAAGGCGTTTGGGGGACTGCAGCAGGAGCAGGGTGGTGAGA
CGGCGGGGCGGGGTGAGGAGCAGCTGTTTCGCAATCGACACAATCAGCAG
CAGCGCCAGGAGAGGCCTCACGGGGCAACGAATAATTTTGCGGCAGCAAG
AACGCAGGTATGCCATGAGAAAGAGCAAGGGGCCGAGGCCGAGGTGCAGA
AAGAAAAGGAGGGAAGCTCTACTTGGCGAGCAGGAAGGGATGGAGGTGGA
GACTACAAATATCGCGCCAGGATGGCGCAGGAGAGAGTTCAAGGTGGTGG
CGGAGCCGCATGGGGAACAAGCTCGTTTTCCTCCGCATCCTCGGCAGCCA
ATCCCTCCTCCCCGTCATCGTCATCATCTTCTTCAAAAAGCAGTAGAATC
CTCAGACTCCCTCGCTATCGCAAATCCGACCGCGGAAACTTGCTCCTGGA
AGTCAGTGAAGCTAAGTTTTTCAATCCTGTCATGGCGCACGCAGCCACGG
GAATGCTGATCGCAGCCATCAATCGTGTGCGGGTGGCAGGGAAACTCTGC
CAAAGGAAAGCCCACGCGCTGTTGCGAACTCTCGGAGCACGCGCGATGCG
TCGGCCTGACTACGCTGGGCGCGAGCTGCTGGAGATGTTATCTGCTATGC
TCAAGATAGGGGACTGGGCCGAGCACCTTTTTGGTCCCAAGGCCTCGATG
CCACCCCTGGTGCCGCTGCGCCCCGGATCAGGTGTGAGGAGGGGTCATGG
AGAGGGCGTGGGGGAGCGTGCTGGTGGTGGGAGCAGAGCGGGGGACGCCG
GTGACAGACAGTCCATGCTCTCGCCGCTGCCACAAACCGAGCAGCGGGAC
CCGGCGCCGCAGCAGGATTTCTTACCCCTGCCTTTACACGAGGTGGAACG
CGCTCAGCTCGCCGAAGTAGAAGCAGACCTCAAGTCGGACCTGTTGTGGA
CTGTGACGGATGGTGTCCCCCATTCGTACGCCGTGACCACCGCGGGACTT
TCGTTGATCCGTGCCTCGGAAGAATTCACCGAGCTTTTCCCTGTGCGGGA
CAGAAGCAAGATGGTGGAAGGCAGTCGACAAGAGGCGGTGTTACCTTGTT
TCCTGTGGGCGAGCCGTCTAGTCCCGGCGGACCAGTTGGGTTTTTTTGAT
ACGTTGGCTTCGACCCTCCTAACGACGGGGGGGCGAGAGAAGATGTCGAT
GGTAGGAAAGTGTGTCGATGGGAGAGGCAAGATTTTCTTGGCATTGATTC
GATACCAGTTGATGATGCGAAAGGAAGGGAGAGACGCAATGGAGGCTTTC
TCATGCCAGCGGTTGCCGCCTTCGCAGCATGTGGTACCATCGAGCGAAGA
GGAGGAGGAGGAGGAGGAGGAAGAGGAGGTGGAGGAGGAGGAAGAGGAAG
AGGAGGAGGAATGGGAAGAGCGAAGGGAGGAGGATGAGAGAAACGGATGA

Synonyms

Publications