jgi.p|Nanoce1779_2|608955, mRNA_10139 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|608955
Unique NamemRNA_10139
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1293
Alignment locationscaffold_43:121289..122581 +

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Properties
Property NameValue
TranscriptId609041
TrackFilteredModels2
ProteinId608955
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_43supercontigscaffold_43:121289..122581 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608955gene_10139Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608955mRNA_10139-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10139CDS_10139Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10139 ID=mRNA_10139|Name=jgi.p|Nanoce1779_2|608955|organism=Nannochloropsis oceanica|type=mRNA|length=1293bp
ACAAGGATTCATGACCCAGACCATGCCTCCATACATTCTCGCCAATGTCA
CCACCCCGGCCCGTCTTCCTTCCCTCCCTCCCTCCCCTCGCTCTCTACCC
CGCACTAGCCCGGTCTCTTCACTCCCTTCCTGCATCCGCCATGATCTCAG
TCCCTCCCTCGCTTTTTCATACGTCTTTTTCCCCTTCCCCAGATACACAG
ACATTGTTACTACTCTCACTCTCGCCCTTTCTTTCTTCCCCTCCGCCTCC
TTCCCAGCCGAGGGAAGGTAAGGAGGCTCTGCGTGGAGAGTCCGGTAAAG
GAAGGGGGGGGGGAGGGAGAGAGGAAGAGACGAGAGGTAATCGGCGATCG
TTTGAGGGGAGGGACGATGAGGGGAGAAGAGGAAACGGGAGGAAGGAAGG
GAGGAAGGGGGGGAGGACGAGGCGACGCTGGTACTGCTACTACTGCCAAG
AACCACAGAAGGAAGGAAAAGGAGGAGAAAGGAGAGCAAGATGGGAGGGA
GGGCTACTCTCTTTCTCTGTGCTCTTGGGTTTGATTTCGTCATGGCTCTG
CTACCCCTACTCCTCCTGCTGCTAGTGCTGATGGTACTGATGCTGATGGT
GAAAGATGACAATAAGAAAAGGAGGAGGAAGACGAAGAAGAAGAGAAGAA
GTAGAAGACTGACGAGTGCCCGATCGAGTACACTGGCCTGTGTCTGGGAA
GGAGGTGTGGTTGGAAGGCAGGAAGTATGAGCATGATTAGGGAGGAAGGA
GGTGAAGCAGCTGCATTGGCAGCCACAGTAACAGTAGCCGCATCCTCGGT
GTCCTTTGCGTCTCATGGTCTCATGTAATCCAGATAGCGCTTCTTCTAAT
GATTGTACACGCTTCTCCTTATTATAGCACGCGCTTTTTCCAACTATTGT
GCGCGCTTCTTCACATTGATGTACACGCTGATTGGACACACTTGTTCTGA
TTGTAAAACATGCGTCGCCAACCACCATCTCCGTTTCTGTCTACCCTTAA
ACTCCTTTTCCTTTCCCTACGGCTATAAACGTACCACCAACGGCAGCAAC
AACCACACACATGACCTATGTCTATTACCGGTGATGCAATGCCGATCCAA
CCCCCCTTTTACCCTTTCTCCTTCATGCTTTCCTTCTTTTAATTACTAAA
ACATGGACAAGGAGCACTCAGCAAAGGAGAAAGACTGTGACGACATATCT
ATAGAAATCGAAATCGAGCACCGCCCCCTCCCCCCCCCCCCAAAAATATA
CTCATTATTCTTACTCTCCCCGTTCTCCTCCCGTCCTCCTTCG
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protein sequence of jgi.p|Nanoce1779_2|608955

>mRNA_10139-protein ID=mRNA_10139-protein|Name=jgi.p|Nanoce1779_2|608955|organism=Nannochloropsis oceanica|type=polypeptide|length=177bp
MSPPRPVFLPSLPPLALYPALARSLHSLPASAMISVPPSLFHTSFSPSPD
TQTLLLLSLSPFLSSPPPPSQPREGKEALRGESGKGRGGGGREEETRGNR
RSFEGRDDEGRRGNGRKEGRKGGRTRRRWYCYYCQEPQKEGKGGERRARW
EGGLLSFSVLLGLISSWLCYPYSSCC*
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mRNA from alignment at scaffold_43:121289..122581+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10139 ID=mRNA_10139|Name=jgi.p|Nanoce1779_2|608955|organism=Nannochloropsis oceanica|type=mRNA|length=1293bp|location=Sequence derived from alignment at scaffold_43:121289..122581+ (Nannochloropsis oceanica)
ACAAGGATTCATGACCCAGACCATGCCTCCATACATTCTCGCCAATGTCA
CCACCCCGGCCCGTCTTCCTTCCCTCCCTCCCTCCCCTCGCTCTCTACCC
CGCACTAGCCCGGTCTCTTCACTCCCTTCCTGCATCCGCCATGATCTCAG
TCCCTCCCTCGCTTTTTCATACGTCTTTTTCCCCTTCCCCAGATACACAG
ACATTGTTACTACTCTCACTCTCGCCCTTTCTTTCTTCCCCTCCGCCTCC
TTCCCAGCCGAGGGAAGGTAAGGAGGCTCTGCGTGGAGAGTCCGGTAAAG
GAAGGGGGGGGGGAGGGAGAGAGGAAGAGACGAGAGGTAATCGGCGATCG
TTTGAGGGGAGGGACGATGAGGGGAGAAGAGGAAACGGGAGGAAGGAAGG
GAGGAAGGGGGGGAGGACGAGGCGACGCTGGTACTGCTACTACTGCCAAG
AACCACAGAAGGAAGGAAAAGGAGGAGAAAGGAGAGCAAGATGGGAGGGA
GGGCTACTCTCTTTCTCTGTGCTCTTGGGTTTGATTTCGTCATGGCTCTG
CTACCCCTACTCCTCCTGCTGCTAGTGCTGATGGTACTGATGCTGATGGT
GAAAGATGACAATAAGAAAAGGAGGAGGAAGACGAAGAAGAAGAGAAGAA
GTAGAAGACTGACGAGTGCCCGATCGAGTACACTGGCCTGTGTCTGGGAA
GGAGGTGTGGTTGGAAGGCAGGAAGTATGAGCATGATTAGGGAGGAAGGA
GGTGAAGCAGCTGCATTGGCAGCCACAGTAACAGTAGCCGCATCCTCGGT
GTCCTTTGCGTCTCATGGTCTCATGTAATCCAGATAGCGCTTCTTCTAAT
GATTGTACACGCTTCTCCTTATTATAGCACGCGCTTTTTCCAACTATTGT
GCGCGCTTCTTCACATTGATGTACACGCTGATTGGACACACTTGTTCTGA
TTGTAAAACATGCGTCGCCAACCACCATCTCCGTTTCTGTCTACCCTTAA
ACTCCTTTTCCTTTCCCTACGGCTATAAACGTACCACCAACGGCAGCAAC
AACCACACACATGACCTATGTCTATTACCGGTGATGCAATGCCGATCCAA
CCCCCCTTTTACCCTTTCTCCTTCATGCTTTCCTTCTTTTAATTACTAAA
ACATGGACAAGGAGCACTCAGCAAAGGAGAAAGACTGTGACGACATATCT
ATAGAAATCGAAATCGAGCACCGCCCCCTCCCCCCCCCCCCAAAAATATA
CTCATTATTCTTACTCTCCCCGTTCTCCTCCCGTCCTCCTTCG
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Coding sequence (CDS) from alignment at scaffold_43:121289..122581+

>mRNA_10139 ID=mRNA_10139|Name=jgi.p|Nanoce1779_2|608955|organism=Nannochloropsis oceanica|type=CDS|length=531bp|location=Sequence derived from alignment at scaffold_43:121289..122581+ (Nannochloropsis oceanica)
ATGTCACCACCCCGGCCCGTCTTCCTTCCCTCCCTCCCTCCCCTCGCTCT
CTACCCCGCACTAGCCCGGTCTCTTCACTCCCTTCCTGCATCCGCCATGA
TCTCAGTCCCTCCCTCGCTTTTTCATACGTCTTTTTCCCCTTCCCCAGAT
ACACAGACATTGTTACTACTCTCACTCTCGCCCTTTCTTTCTTCCCCTCC
GCCTCCTTCCCAGCCGAGGGAAGGTAAGGAGGCTCTGCGTGGAGAGTCCG
GTAAAGGAAGGGGGGGGGGAGGGAGAGAGGAAGAGACGAGAGGTAATCGG
CGATCGTTTGAGGGGAGGGACGATGAGGGGAGAAGAGGAAACGGGAGGAA
GGAAGGGAGGAAGGGGGGGAGGACGAGGCGACGCTGGTACTGCTACTACT
GCCAAGAACCACAGAAGGAAGGAAAAGGAGGAGAAAGGAGAGCAAGATGG
GAGGGAGGGCTACTCTCTTTCTCTGTGCTCTTGGGTTTGATTTCGTCATG
GCTCTGCTACCCCTACTCCTCCTGCTGCTAG
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Synonyms
Publications