jgi.p|Nanoce1779_2|608952, mRNA_10138 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|608952
Unique NamemRNA_10138
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length874
Alignment locationscaffold_43:120418..121291 -

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Properties
Property NameValue
TranscriptId609038
TrackFilteredModels2
ProteinId608952
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_43supercontigscaffold_43:120418..121291 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608952gene_10138Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608952mRNA_10138-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10138CDS_10138Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10138 ID=mRNA_10138|Name=jgi.p|Nanoce1779_2|608952|organism=Nannochloropsis oceanica|type=mRNA|length=874bp
TGTTGTGTGGCGTATGAGGTTTTCGATCGAAAGGACATAGAGGGAGGGAG
GGAGGGGGAGAGGGAGGGAGGGAAGAAGGGAGGAAGGGCGAGGGTGTGGT
CTGCGGTTGCCTATGCGACTGTTGGTCGACATTTGATCGCAGGCGAAGAG
AGAATGCGAGTGATCTGGTACCCGAAACAGAGAAGGAGGGGGAAAAGGAG
GGAAGGCGAGGACGAGGTGTGGTTCGAGGTCTTATCACTAGCGAGGGGGA
ATGGATGGGCTGGTTGGTTGCTTTTCCCACTGAACAAAAGACTGCAAACA
AATTTTTTCCAGGACCAATTAAGTAGTATGAGGAGGATTGCTCATGGCGA
AGTTAGGGAGCTCGAGAGAGGAAGGACAGGGTTGGAGGCTGGAATAAAAG
ATTAGAACTGTGCAGTACCCGTGCAATCAGGGTGTTGTGTTGATACATGC
GTGTGTGATGCCTATTCCCCGTGGCCGTCTCGTGGCGCAATTACTTGGTT
TACTTTTCTGTTTTTCTCGCATGTTATCAGGGGGTGAATGACAGGAGTGT
TTGTATAAACACCCCCTCCATTTTTCCTCTTGTCTGTTGTCTGTGTCTGA
AGCAAACTCAGTTCTTACTTCCCCTTCCTCTTAGCCCGCAAGTGCACCTG
CGCCCACTTACCTCTTATAAGGTCTTGGCCCTTCCACTCATTTAGGCTCA
CCCACATTTCTTACCTTTGCAGTTTATCTGTCTCTTTTCCACGTGTGCAC
CTGCTCTTTAACCGCACTCTACATGTGTGCGGAATTCATCGTCATTTCAA
CGTCGCAATCGGGACATAAGCTAGACATCCCAAAGCCACGGAACGCACGC
ACGTCATCATAGGTACATTCTCTC
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protein sequence of jgi.p|Nanoce1779_2|608952

>mRNA_10138-protein ID=mRNA_10138-protein|Name=jgi.p|Nanoce1779_2|608952|organism=Nannochloropsis oceanica|type=polypeptide|length=84bp
MRVIWYPKQRRRGKRREGEDEVWFEVLSLARGNGWAGWLLFPLNKRLQTN
FFQDQLSSMRRIAHGEVRELERGRTGLEAGIKD*
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mRNA from alignment at scaffold_43:120418..121291-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10138 ID=mRNA_10138|Name=jgi.p|Nanoce1779_2|608952|organism=Nannochloropsis oceanica|type=mRNA|length=874bp|location=Sequence derived from alignment at scaffold_43:120418..121291- (Nannochloropsis oceanica)
TGTTGTGTGGCGTATGAGGTTTTCGATCGAAAGGACATAGAGGGAGGGAG
GGAGGGGGAGAGGGAGGGAGGGAAGAAGGGAGGAAGGGCGAGGGTGTGGT
CTGCGGTTGCCTATGCGACTGTTGGTCGACATTTGATCGCAGGCGAAGAG
AGAATGCGAGTGATCTGGTACCCGAAACAGAGAAGGAGGGGGAAAAGGAG
GGAAGGCGAGGACGAGGTGTGGTTCGAGGTCTTATCACTAGCGAGGGGGA
ATGGATGGGCTGGTTGGTTGCTTTTCCCACTGAACAAAAGACTGCAAACA
AATTTTTTCCAGGACCAATTAAGTAGTATGAGGAGGATTGCTCATGGCGA
AGTTAGGGAGCTCGAGAGAGGAAGGACAGGGTTGGAGGCTGGAATAAAAG
ATTAGAACTGTGCAGTACCCGTGCAATCAGGGTGTTGTGTTGATACATGC
GTGTGTGATGCCTATTCCCCGTGGCCGTCTCGTGGCGCAATTACTTGGTT
TACTTTTCTGTTTTTCTCGCATGTTATCAGGGGGTGAATGACAGGAGTGT
TTGTATAAACACCCCCTCCATTTTTCCTCTTGTCTGTTGTCTGTGTCTGA
AGCAAACTCAGTTCTTACTTCCCCTTCCTCTTAGCCCGCAAGTGCACCTG
CGCCCACTTACCTCTTATAAGGTCTTGGCCCTTCCACTCATTTAGGCTCA
CCCACATTTCTTACCTTTGCAGTTTATCTGTCTCTTTTCCACGTGTGCAC
CTGCTCTTTAACCGCACTCTACATGTGTGCGGAATTCATCGTCATTTCAA
CGTCGCAATCGGGACATAAGCTAGACATCCCAAAGCCACGGAACGCACGC
ACGTCATCATAGGTACATTCTCTC
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Coding sequence (CDS) from alignment at scaffold_43:120418..121291-

>mRNA_10138 ID=mRNA_10138|Name=jgi.p|Nanoce1779_2|608952|organism=Nannochloropsis oceanica|type=CDS|length=252bp|location=Sequence derived from alignment at scaffold_43:120418..121291- (Nannochloropsis oceanica)
ATGCGAGTGATCTGGTACCCGAAACAGAGAAGGAGGGGGAAAAGGAGGGA
AGGCGAGGACGAGGTGTGGTTCGAGGTCTTATCACTAGCGAGGGGGAATG
GATGGGCTGGTTGGTTGCTTTTCCCACTGAACAAAAGACTGCAAACAAAT
TTTTTCCAGGACCAATTAAGTAGTATGAGGAGGATTGCTCATGGCGAAGT
TAGGGAGCTCGAGAGAGGAAGGACAGGGTTGGAGGCTGGAATAAAAGATT
AG
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Synonyms
Publications