jgi.p|Nanoce1779_2|608917, mRNA_10135 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|608917
Unique NamemRNA_10135
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length485
Alignment locationscaffold_43:109623..110107 +

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Properties
Property NameValue
TranscriptId609003
TrackFilteredModels2
ProteinId608917
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_43supercontigscaffold_43:109623..110107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608917gene_10135Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608917mRNA_10135-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10135CDS_10135Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10135 ID=mRNA_10135|Name=jgi.p|Nanoce1779_2|608917|organism=Nannochloropsis oceanica|type=mRNA|length=485bp
GAGACATGTTCGGTGAAGGATCGCCTCCACCATTCAGTCCAGCGAAAGGG
AAATACCCTCCAAATCCTCCTGCTCCTGCTCCTGCTCCTACTGCCCCCGC
TGCCCCCGCTACCCCTCGTCCTCCCCCTCCCCTTACACCTGCTGCTCCTT
CTCGTCCTCTCGAAGGCCCCTGTTCCCCTCCTGAAGCCCCTCCCTCTCTT
CTTTCTCCGTTGTTCCCGTATCCTCCCCGACCTCTTCCCCTTTCTCCGTG
TCCTCTGCCATCACCTCTGCCTTCTCCTCTTCTTCCCCCTCCAAAAATAC
CATTGAACAATTCTTCCATTGCTTGCTCTGGATGTCCTTCCCTACCTTTG
CCTTGCGTTGTTCGCACTCACAGCAAAAGCACAAGCAGTTGCAGCAACAG
CAGCAACAGCAGCAGCAGCAGCGGCGGCGGCGGCGGCGGAAATAGTGCTA
CTGCGGACCGGCAAGCTCTGTAGGTAAGCACTTCA
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protein sequence of jgi.p|Nanoce1779_2|608917

>mRNA_10135-protein ID=mRNA_10135-protein|Name=jgi.p|Nanoce1779_2|608917|organism=Nannochloropsis oceanica|type=polypeptide|length=156bp
MFGEGSPPPFSPAKGKYPPNPPAPAPAPTAPAAPATPRPPPPLTPAAPSR
PLEGPCSPPEAPPSLLSPLFPYPPRPLPLSPCPLPSPLPSPLLPPPKIPL
NNSSIACSGCPSLPLPCVVRTHSKSTSSCSNSSNSSSSSGGGGGGNSATA
DRQAL*
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mRNA from alignment at scaffold_43:109623..110107+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10135 ID=mRNA_10135|Name=jgi.p|Nanoce1779_2|608917|organism=Nannochloropsis oceanica|type=mRNA|length=485bp|location=Sequence derived from alignment at scaffold_43:109623..110107+ (Nannochloropsis oceanica)
GAGACATGTTCGGTGAAGGATCGCCTCCACCATTCAGTCCAGCGAAAGGG
AAATACCCTCCAAATCCTCCTGCTCCTGCTCCTGCTCCTACTGCCCCCGC
TGCCCCCGCTACCCCTCGTCCTCCCCCTCCCCTTACACCTGCTGCTCCTT
CTCGTCCTCTCGAAGGCCCCTGTTCCCCTCCTGAAGCCCCTCCCTCTCTT
CTTTCTCCGTTGTTCCCGTATCCTCCCCGACCTCTTCCCCTTTCTCCGTG
TCCTCTGCCATCACCTCTGCCTTCTCCTCTTCTTCCCCCTCCAAAAATAC
CATTGAACAATTCTTCCATTGCTTGCTCTGGATGTCCTTCCCTACCTTTG
CCTTGCGTTGTTCGCACTCACAGCAAAAGCACAAGCAGTTGCAGCAACAG
CAGCAACAGCAGCAGCAGCAGCGGCGGCGGCGGCGGCGGAAATAGTGCTA
CTGCGGACCGGCAAGCTCTGTAGGTAAGCACTTCA
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Coding sequence (CDS) from alignment at scaffold_43:109623..110107+

>mRNA_10135 ID=mRNA_10135|Name=jgi.p|Nanoce1779_2|608917|organism=Nannochloropsis oceanica|type=CDS|length=468bp|location=Sequence derived from alignment at scaffold_43:109623..110107+ (Nannochloropsis oceanica)
ATGTTCGGTGAAGGATCGCCTCCACCATTCAGTCCAGCGAAAGGGAAATA
CCCTCCAAATCCTCCTGCTCCTGCTCCTGCTCCTACTGCCCCCGCTGCCC
CCGCTACCCCTCGTCCTCCCCCTCCCCTTACACCTGCTGCTCCTTCTCGT
CCTCTCGAAGGCCCCTGTTCCCCTCCTGAAGCCCCTCCCTCTCTTCTTTC
TCCGTTGTTCCCGTATCCTCCCCGACCTCTTCCCCTTTCTCCGTGTCCTC
TGCCATCACCTCTGCCTTCTCCTCTTCTTCCCCCTCCAAAAATACCATTG
AACAATTCTTCCATTGCTTGCTCTGGATGTCCTTCCCTACCTTTGCCTTG
CGTTGTTCGCACTCACAGCAAAAGCACAAGCAGTTGCAGCAACAGCAGCA
ACAGCAGCAGCAGCAGCGGCGGCGGCGGCGGCGGAAATAGTGCTACTGCG
GACCGGCAAGCTCTGTAG
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Synonyms
Publications