jgi.p|Nanoce1779_2|660765, mRNA_10129 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|660765
Unique NamemRNA_10129
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length470
Alignment locationscaffold_43:82994..84028 +

Link to JBrowse

Properties
Property NameValue
TranscriptId660851
TrackFilteredModels2
ProteinId660765
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_43supercontigscaffold_43:82994..84028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|660765gene_10129Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|660765mRNA_10129-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10129CDS_10129Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10129 ID=mRNA_10129|Name=jgi.p|Nanoce1779_2|660765|organism=Nannochloropsis oceanica|type=mRNA|length=470bp
CCTCCTCCCCTCCTCCCTCCCCCTCCTCCTCCCTCTATACCTCCACCATC
ATTTCGTCCGAAGGAATGGAAAGATTAGGGGAGGGCTTGTGGGAGGCAGG
ATTAGCAGCAGGACACACGGTGCTTTTGTACGGGGACCTAGGCACAGGCA
AGACGACTCTCGCCCGTGGGCTCATCCAGGCCGCTACAGCCGCCGGGGAG
GAGGGAGAGGGAGGGAGGGAGGGAGCGGTGGCAGTCAACATCGCCGTCAA
GCACGACCTGAAAATTTTGGGTTTCCCTCTTGTGCTGGAAGAAGCCCTCT
GCCTTATTGAGTGGCCCGAGCGTCTAGGCAGCTACACTCCTACCACGCGG
CTGGAAATAAATTTAAGTGCTCTAGACGAAAATACGAGGACGGTGGTTAT
TCGAGGGGTGGGGGGAGGATGGGCGGATGAAGTGGTGAGGAGGCTCGAGG
ACGTTATGAATGAGGAGTGA
back to top

protein sequence of jgi.p|Nanoce1779_2|660765

>mRNA_10129-protein ID=mRNA_10129-protein|Name=jgi.p|Nanoce1779_2|660765|organism=Nannochloropsis oceanica|type=polypeptide|length=135bp
MERLGEGLWEAGLAAGHTVLLYGDLGTGKTTLARGLIQAATAAGEEGEGG
REGAVAVNIAVKHDLKILGFPLVLEEALCLIEWPERLGSYTPTTRLEINL
SALDENTRTVVIRGVGGGWADEVVRRLEDVMNEE*
back to top

mRNA from alignment at scaffold_43:82994..84028+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10129 ID=mRNA_10129|Name=jgi.p|Nanoce1779_2|660765|organism=Nannochloropsis oceanica|type=mRNA|length=1035bp|location=Sequence derived from alignment at scaffold_43:82994..84028+ (Nannochloropsis oceanica)
CCTCCTCCCCTCCTCCCTCCCCCTCCTCCTCCCTCTATACCTCCACCATC
ATTTCGTCCGAAGGAATGGAAAGATTAGGGGAGGGCTTGTGGGAGGCAGG
ATTAGCAGCAGGACACACGGTGCTTTTGTACGGGTACGTCTCTCCCCTTC
CTTCCTTCCTCCTCCCTCCTTCCCTCCCTCTCACAGACCTGGGCACAGGC
AAGATATTCTTATCCCTTGACCGTCCAGTAATCACCCCCTCCCCTCCCGT
CCCTCCCTCCCTTCCAGGGACCTAGGCACAGGCAAGACGACTCTCGCCCG
TGGGCTCATCCAGGCCGCTACAGCCGCCGGGGAGGAGGGAGAGGGAGGGA
GGGAGGGAGCGGTGGCAGTCAACATCGCCGTCGTACTTGTTGGATAATAG
CTACCAGGCTTGTGATGGGGAGACAGGGGATATATTTATGTGAGTAGGGA
AAAGGGATGGCAAAAGGGGGGGAGGGAAGAGGAAATTGTGTTCGTGGTGG
TCGACTCATCAATTTGCTGTCTGCCTATTTTCGTCTACCTTTTCCCAACT
CTTCCTGCCTCCCTTCCCCCCCTCTCTCCCTCAGGATCCACCACATGGAC
CTCTATCGCCTTTCTATGGAGAAGCACGACCTGAAAATTTTGGGTTTCCC
TCTTGTGCTGGAAGAAGGTAGGTGAGGTTGATAGAGCGGGAGAGAGGGGT
GAGAAGGGGGAAAGGGGAAGTACAGACGACAGCTGTAACCACCTCTAAAT
CTTTCCGTGCACTTGATTGCTCAATTGATCGCTGGAGGAAATTCAAAAAG
ACGCTCAACCTCTCCCCTTTTCTCCCTCCTACCATCCTTCCCTTTCCACT
CCGCTTCAGCCCTCTGCCTTATTGAGTGGCCCGAGCGTCTAGGCAGCTAC
ACTCCTACCACGCGGCTGGAAATAAATTTAAGTGCTCTAGACGAAAATAC
GAGGACGGTGGTTATTCGAGGGGTGGGGGGAGGATGGGCGGATGAAGTGG
TGAGGAGGCTCGAGGACGTTATGAATGAGGAGTGA
back to top

Coding sequence (CDS) from alignment at scaffold_43:82994..84028+

>mRNA_10129 ID=mRNA_10129|Name=jgi.p|Nanoce1779_2|660765|organism=Nannochloropsis oceanica|type=CDS|length=1620bp|location=Sequence derived from alignment at scaffold_43:82994..84028+ (Nannochloropsis oceanica)
ATGGAAAGATTAGGGGAGGGCTTGTGGGAGGCAGGATTAGCAGCAGGACA
CACGGTGCTTTTGTACGGGGACCTAGGCACAGGCAAGACGACTCTCGCCC
GTGGGCTCATCCAGGCCGCTACAGCCGCCGGGGAGGAGGGAGAGGGAGGG
AGGGAGGGAGCGGTGGCAGTCAACATCGCCGTCAAGCACGACCTGAAAAT
TTTGGGTTTCCCTCTTGTGCTGGAAGAAGCCCTCTGCCTTATTGAGTGGC
CCGAGCGTCTAGGCAGCTACACTCCTACCACGCGGCTGGAAATAAATTTA
AGTGCTCTAGACGAAAATACGAGGACGGTGGTTATTCGAGGGGTGGGGGG
AGGATGGGCGGATGAAGTGGTGAGGAGGCTCGAGGACGTTATGAATGAGG
AGTGAATGGAAAGATTAGGGGAGGGCTTGTGGGAGGCAGGATTAGCAGCA
GGACACACGGTGCTTTTGTACGGGGACCTAGGCACAGGCAAGACGACTCT
CGCCCGTGGGCTCATCCAGGCCGCTACAGCCGCCGGGGAGGAGGGAGAGG
GAGGGAGGGAGGGAGCGGTGGCAGTCAACATCGCCGTCAAGCACGACCTG
AAAATTTTGGGTTTCCCTCTTGTGCTGGAAGAAGCCCTCTGCCTTATTGA
GTGGCCCGAGCGTCTAGGCAGCTACACTCCTACCACGCGGCTGGAAATAA
ATTTAAGTGCTCTAGACGAAAATACGAGGACGGTGGTTATTCGAGGGGTG
GGGGGAGGATGGGCGGATGAAGTGGTGAGGAGGCTCGAGGACGTTATGAA
TGAGGAGTGAATGGAAAGATTAGGGGAGGGCTTGTGGGAGGCAGGATTAG
CAGCAGGACACACGGTGCTTTTGTACGGGGACCTAGGCACAGGCAAGACG
ACTCTCGCCCGTGGGCTCATCCAGGCCGCTACAGCCGCCGGGGAGGAGGG
AGAGGGAGGGAGGGAGGGAGCGGTGGCAGTCAACATCGCCGTCAAGCACG
ACCTGAAAATTTTGGGTTTCCCTCTTGTGCTGGAAGAAGCCCTCTGCCTT
ATTGAGTGGCCCGAGCGTCTAGGCAGCTACACTCCTACCACGCGGCTGGA
AATAAATTTAAGTGCTCTAGACGAAAATACGAGGACGGTGGTTATTCGAG
GGGTGGGGGGAGGATGGGCGGATGAAGTGGTGAGGAGGCTCGAGGACGTT
ATGAATGAGGAGTGAATGGAAAGATTAGGGGAGGGCTTGTGGGAGGCAGG
ATTAGCAGCAGGACACACGGTGCTTTTGTACGGGGACCTAGGCACAGGCA
AGACGACTCTCGCCCGTGGGCTCATCCAGGCCGCTACAGCCGCCGGGGAG
GAGGGAGAGGGAGGGAGGGAGGGAGCGGTGGCAGTCAACATCGCCGTCAA
GCACGACCTGAAAATTTTGGGTTTCCCTCTTGTGCTGGAAGAAGCCCTCT
GCCTTATTGAGTGGCCCGAGCGTCTAGGCAGCTACACTCCTACCACGCGG
CTGGAAATAAATTTAAGTGCTCTAGACGAAAATACGAGGACGGTGGTTAT
TCGAGGGGTGGGGGGAGGATGGGCGGATGAAGTGGTGAGGAGGCTCGAGG
ACGTTATGAATGAGGAGTGA
back to top
Synonyms
Publications