jgi.p|Nanoce1779_2|608862, mRNA_10128 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|608862
Unique NamemRNA_10128
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length529
Alignment locationscaffold_43:82370..83014 +

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Properties
Property NameValue
TranscriptId608948
TrackFilteredModels2
ProteinId608862
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_43supercontigscaffold_43:82370..83014 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608862gene_10128Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608862mRNA_10128-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10128CDS_10128Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10128 ID=mRNA_10128|Name=jgi.p|Nanoce1779_2|608862|organism=Nannochloropsis oceanica|type=mRNA|length=529bp
ACAGTGACAAAGGCGTAGCGGAGCATGCCGCGTAAACTACCTGGAAACAA
CCGTTCCTTCTACGTCGCCTTCCGCTCGCCTTCCGCGTCTCCTCCTTGTC
TTGCTTCCTTCTTGCTGCACTAGCCTCCTCTCCTCCTTCGCCCTCTTATC
AAACCACAACGACGACTCCAATGATGGCTTCATGTCTAAGAATACATACC
CGCAGGAATGCTGCCATCCCTCTTTTTTTACTCAGCAGTGGTGGCAGCAG
CAGCATTCATACGATCAGCGGTGGCCCCATGAGCATAAACAGAAATGTGC
ACACGGTTGGCATTGTCTCCTCTGCTACTTTCGACTCTCCTCTCCTCCTC
TGTCACCTCCTCCTGCCTTCTCTCCATCACTTCTACCCTCCCGCACCTCT
TCGTCTTTACTATCATGCTCATTATTCTCCTCCTCCTCCTCATCAAGAAT
GAGACCCTTCTCCTGCTCTCTACTACACGCCTGCTCTCCTCCTCCTCCTC
CTCCCCCCCCTCCTCCCCTCCTCCCTCCC
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protein sequence of jgi.p|Nanoce1779_2|608862

>mRNA_10128-protein ID=mRNA_10128-protein|Name=jgi.p|Nanoce1779_2|608862|organism=Nannochloropsis oceanica|type=polypeptide|length=52bp
MCTRLALSPLLLSTLLSSSVTSSCLLSITSTLPHLFVFTIMLIILLLLLI
KN
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mRNA from alignment at scaffold_43:82370..83014+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10128 ID=mRNA_10128|Name=jgi.p|Nanoce1779_2|608862|organism=Nannochloropsis oceanica|type=mRNA|length=645bp|location=Sequence derived from alignment at scaffold_43:82370..83014+ (Nannochloropsis oceanica)
ACAGTGACAAAGGCGTAGCGGAGCATGCCGCGTAAACTACCTGGAAACAA
CCGTTCCTTCTACGTCGCCTTCCGCTCGCCTTCCGCGTCTCCTCCTTGTC
TTGCTTCCTTCTTGCTGCACTAGCCTCCTCTCCTCCTTCGCCCTCTTATC
AAACCACAACGACGACTCCAATGATGGCTTCATGTCGTAAGTTCCTAAAT
TGTTGCTGAAGAATTTATTTTTTTGGACTTTTCCGACGTTGTGTCCATTC
CTCTCAACCTCCCCTCCATCTCTTCCTCTTCCTGCTCCTCCTACACACGC
AGTAAGAATACATACCCGCAGGAATGCTGCCATCCCTCTTTTTTTACTCA
GCAGTGGTGGCAGCAGCAGCATTCATACGATCAGCGGTGGCCCCATGAGC
ATAAACAGAAATGTGCACACGGTTGGCATTGTCTCCTCTGCTACTTTCGA
CTCTCCTCTCCTCCTCTGTCACCTCCTCCTGCCTTCTCTCCATCACTTCT
ACCCTCCCGCACCTCTTCGTCTTTACTATCATGCTCATTATTCTCCTCCT
CCTCCTCATCAAGAATGAGACCCTTCTCCTGCTCTCTACTACACGCCTGC
TCTCCTCCTCCTCCTCCTCCCCCCCCTCCTCCCCTCCTCCCTCCC
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Coding sequence (CDS) from alignment at scaffold_43:82370..83014+

>mRNA_10128 ID=mRNA_10128|Name=jgi.p|Nanoce1779_2|608862|organism=Nannochloropsis oceanica|type=CDS|length=158bp|location=Sequence derived from alignment at scaffold_43:82370..83014+ (Nannochloropsis oceanica)
ATGTGCACACGGTTGGCATTGTCTCCTCTGCTACTTTCGACTCTCCTCTC
CTCCTCTGTCACCTCCTCCTGCCTTCTCTCCATCACTTCTACCCTCCCGC
ACCTCTTCGTCTTTACTATCATGCTCATTATTCTCCTCCTCCTCCTCATC
AAGAATGA
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Synonyms
Publications