jgi.p|Nanoce1779_2|309812, mRNA_10127 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|309812
Unique NamemRNA_10127
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length794
Alignment locationscaffold_43:75750..77001 -

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Properties
Property NameValue
TranscriptId309898
TrackFilteredModels2
ProteinId309812
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_43supercontigscaffold_43:75750..77001 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|309812gene_10127Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|309812mRNA_10127-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10127CDS_10127Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10127 ID=mRNA_10127|Name=jgi.p|Nanoce1779_2|309812|organism=Nannochloropsis oceanica|type=mRNA|length=794bp
ATTATGCTATTATTTCTTCCTCCCTCCCTTCATTCCTCTTATCCCCCCTC
TCTTCCTCGCTCCCTGCAGGCAAACCGACCGTCTATCGGCCCATGCACAT
GCCTCCTCCTCCCCCTCCCTCTTTCCCTTCCTCTTCCTCCCCCTCCACCA
CTACTTCCTCCTCCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTTGGCC
TTGCCCCGCCCCGCATCTGTGCAAGACACGGCAGGAGGAGGGGGATGGGC
AGTTTACGGAGGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAC
AGGGAGGTTTCCTGCAAGTGACTCAGCAGCAACAGCAGCAGCTGTTGATA
CCGGAGCAGGAATACCTCGAAGCCCGGGCCCAAGCCATCGAAGACGTCGA
GTCGCACATCGTCGAGCTAGGTTCAATTTTCAACCGTCTGGCTAACATGA
TCTCGGAGCAACGGGAACTCGTAGAGCGGATCGAAGACAACGTGGACGAC
GCCCACGAGCGCGTCTCGCGCACTCGCGATTATCTCCTTGGTGTCTACAG
CCGGCTTTCTAATAATGGACCATTGGTTTTCAAATCGTTTTTGGTGCTTG
TTTCGTTTATTATTATGTTCGTCTTGTTCATTGCATGAGCGGAAAGAGGA
GACCGTGCGATGCAGCGAGGGTCGGCGTCAGAGAGGGGTGAAAAAGAAAA
GGAAGAAACGAAACTTATTCTTGAAGTGTTTTGCAAATCTTCAATATTGA
CAAGCGAAATTTATTTCAGCGAAAAAACGCTAAGGTCAACCATT
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protein sequence of jgi.p|Nanoce1779_2|309812

>mRNA_10127-protein ID=mRNA_10127-protein|Name=jgi.p|Nanoce1779_2|309812|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp
MHMPPPPPPSFPSSSSPSTTTSSSSPSSSSSSSSLALPRPASVQDTAGGG
GWAVYGGQQQQQQQQQQQQQGGFLQVTQQQQQQLLIPEQEYLEARAQAIE
DVESHIVELGSIFNRLANMISEQRELVERIEDNVDDAHERVSRTRDYLLG
VYSRLSNNGPLVFKSFLVLVSFIIMFVLFIA*
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mRNA from alignment at scaffold_43:75750..77001-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10127 ID=mRNA_10127|Name=jgi.p|Nanoce1779_2|309812|organism=Nannochloropsis oceanica|type=mRNA|length=1252bp|location=Sequence derived from alignment at scaffold_43:75750..77001- (Nannochloropsis oceanica)
ATTATGCTATTATTTCTTCCTCCCTCCCTTCATTCCTCTTATCCCCCCTC
TCTTCCTCGCTCCCTGCAGGCAAACCGACCGTCTATCGGCCCATGCACAT
GCCTCCTCCTCCCCCTCCCTCTTTCCCTTCCTCTTCCTCCCCCTCCACCA
CTACTTCCTCCTCCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTTGGCC
TTGCCCCGCCCCGCATCTGTGCAAGACACGGCAGGAGGAGGGGGATGGGC
AGTTTACGGAGGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAC
AGGGAGGTTTCCTGCAAGTGACTCAGCAGCAACAGCAGCAGCTGTTGATA
CCGGAGCAGGTGAGGGAAGGATAAAGGGACAGAGGGAGGAAAGGAAGGGA
GGAAAGGAAGTTGCTCCTTTCCAATGACAAAACACCTATCCCGGTTGCTT
ATACATCTCTCCTTCCTTCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTC
CAGGAATACCTCGAAGCCCGGGCCCAAGCCATCGAAGACGTCGAGTCGCA
CATCGTCGAGCTAGGGTACTTCTCCTCCCTCCCTCCCTCCCTCCCTCCCC
TTCCTTCCTTCCTTCCTGCCTTCCTCCCTCCTTCCCTCCCTCCAATTCAC
TGACACACCTTCTCCTCCCTCTCTCCCTCCCCCTCTCCCTCCCTCCCTCC
CTCCCTCATCTAGTTCAATTTTCAACCGTCTGGCTAACATGATCTCGGAG
CAACGGGAACTCGTAGAGCGGTGAGGACGGAGGGAAAGAGAGGAAGGGAG
GGAAGACGGGGAGGAAGACAGTGAATTGATTTATATAATAGATTAGCAAG
TCACTTTAGCTATCGTTACTCGTCCTCGTCGTACCATTCACCTAGACCCA
ACCCTCCCTCCCTCCCTCCCTCCCTTCCTTCCTCAGGATCGAAGACAACG
TGGACGACGCCCACGAGCGCGTCTCGCGCACTCGCGATTATCTCCTTGGT
GTCTACAGCCGGCTTTCTAATAATGGACCATTGGTTTTCAAATCGTTTTT
GGTGCTTGTTTCGTTTATTATTATGTTCGTCTTGTTCATTGCATGAGCGG
AAAGAGGAGACCGTGCGATGCAGCGAGGGTCGGCGTCAGAGAGGGGTGAA
AAAGAAAAGGAAGAAACGAAACTTATTCTTGAAGTGTTTTGCAAATCTTC
AATATTGACAAGCGAAATTTATTTCAGCGAAAAAACGCTAAGGTCAACCA
TT
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Coding sequence (CDS) from alignment at scaffold_43:75750..77001-

>mRNA_10127 ID=mRNA_10127|Name=jgi.p|Nanoce1779_2|309812|organism=Nannochloropsis oceanica|type=CDS|length=2184bp|location=Sequence derived from alignment at scaffold_43:75750..77001- (Nannochloropsis oceanica)
GATCGAAGACAACGTGGACGACGCCCACGAGCGCGTCTCGCGCACTCGCG
ATTATCTCCTTGGTGTCTACAGCCGGCTTTCTAATAATGGACCATTGGTT
TTCAAATCGTTTTTGGTGCTTGTTTCGTTTATTATTATGTTCGTCTTGTT
CATTGCATGATTCAATTTTCAACCGTCTGGCTAACATGATCTCGGAGCAA
CGGGAACTCGTAGAGCGGAATACCTCGAAGCCCGGGCCCAAGCCATCGAA
GACGTCGAGTCGCACATCGTCGAGCTAGGATGCACATGCCTCCTCCTCCC
CCTCCCTCTTTCCCTTCCTCTTCCTCCCCCTCCACCACTACTTCCTCCTC
CTCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTTGGCCTTGCCCCGCCCCG
CATCTGTGCAAGACACGGCAGGAGGAGGGGGATGGGCAGTTTACGGAGGG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGGGAGGTTTCCT
GCAAGTGACTCAGCAGCAACAGCAGCAGCTGTTGATACCGGAGCAGGATC
GAAGACAACGTGGACGACGCCCACGAGCGCGTCTCGCGCACTCGCGATTA
TCTCCTTGGTGTCTACAGCCGGCTTTCTAATAATGGACCATTGGTTTTCA
AATCGTTTTTGGTGCTTGTTTCGTTTATTATTATGTTCGTCTTGTTCATT
GCATGATTCAATTTTCAACCGTCTGGCTAACATGATCTCGGAGCAACGGG
AACTCGTAGAGCGGAATACCTCGAAGCCCGGGCCCAAGCCATCGAAGACG
TCGAGTCGCACATCGTCGAGCTAGGATGCACATGCCTCCTCCTCCCCCTC
CCTCTTTCCCTTCCTCTTCCTCCCCCTCCACCACTACTTCCTCCTCCTCC
CCCTCCTCCTCCTCCTCCTCCTCCTCCTTGGCCTTGCCCCGCCCCGCATC
TGTGCAAGACACGGCAGGAGGAGGGGGATGGGCAGTTTACGGAGGGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGGGAGGTTTCCTGCAA
GTGACTCAGCAGCAACAGCAGCAGCTGTTGATACCGGAGCAGGATCGAAG
ACAACGTGGACGACGCCCACGAGCGCGTCTCGCGCACTCGCGATTATCTC
CTTGGTGTCTACAGCCGGCTTTCTAATAATGGACCATTGGTTTTCAAATC
GTTTTTGGTGCTTGTTTCGTTTATTATTATGTTCGTCTTGTTCATTGCAT
GATTCAATTTTCAACCGTCTGGCTAACATGATCTCGGAGCAACGGGAACT
CGTAGAGCGGAATACCTCGAAGCCCGGGCCCAAGCCATCGAAGACGTCGA
GTCGCACATCGTCGAGCTAGGATGCACATGCCTCCTCCTCCCCCTCCCTC
TTTCCCTTCCTCTTCCTCCCCCTCCACCACTACTTCCTCCTCCTCCCCCT
CCTCCTCCTCCTCCTCCTCCTCCTTGGCCTTGCCCCGCCCCGCATCTGTG
CAAGACACGGCAGGAGGAGGGGGATGGGCAGTTTACGGAGGGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAACAGGGAGGTTTCCTGCAAGTGA
CTCAGCAGCAACAGCAGCAGCTGTTGATACCGGAGCAGGATCGAAGACAA
CGTGGACGACGCCCACGAGCGCGTCTCGCGCACTCGCGATTATCTCCTTG
GTGTCTACAGCCGGCTTTCTAATAATGGACCATTGGTTTTCAAATCGTTT
TTGGTGCTTGTTTCGTTTATTATTATGTTCGTCTTGTTCATTGCATGATT
CAATTTTCAACCGTCTGGCTAACATGATCTCGGAGCAACGGGAACTCGTA
GAGCGGAATACCTCGAAGCCCGGGCCCAAGCCATCGAAGACGTCGAGTCG
CACATCGTCGAGCTAGGATGCACATGCCTCCTCCTCCCCCTCCCTCTTTC
CCTTCCTCTTCCTCCCCCTCCACCACTACTTCCTCCTCCTCCCCCTCCTC
CTCCTCCTCCTCCTCCTCCTTGGCCTTGCCCCGCCCCGCATCTGTGCAAG
ACACGGCAGGAGGAGGGGGATGGGCAGTTTACGGAGGGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAACAGGGAGGTTTCCTGCAAGTGACTCA
GCAGCAACAGCAGCAGCTGTTGATACCGGAGCAG
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Synonyms
Publications