jgi.p|Nanoce1779_2|517000, mRNA_1012 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|517000
Unique NamemRNA_1012
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length720
Alignment locationscaffold_2:1013118..1014315 +

Link to JBrowse

Properties
Property NameValue
TranscriptId517086
TrackFilteredModels2
ProteinId517000
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1013118..1014315 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|517000gene_1012Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|517000mRNA_1012-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1012CDS_1012Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1012 ID=mRNA_1012|Name=jgi.p|Nanoce1779_2|517000|organism=Nannochloropsis oceanica|type=mRNA|length=720bp
ATGACAGACATTGATTACTGGGATGGCGAGCTCACAAGCAAAATGACGGA
GCTGGAGCAGTCGATTGGGAGCATTAAGTCCCTCTTTAGCGGGGATAAGG
AAGCGTGCATCGCCAAGTGCGACTCCCTCCTCAAGCGCGTCCGGGAAGTG
AAAAAGGGTTACAACTACGAAATGCGCATGTCCTTGAGAAATGATCCTCG
TCGGCACGACTATGCGGAAAAACTCAAGGTAGCCGACGAGCGAATTGCTG
TGTTGGAAACCGAGTTAAAATGGGCGAAGAGCGAAGCGGACAAAAAAGTC
TTATTCAAGGGCGGGGCGGGGAAGGGAGGGGTGGACGGAGGGGGGGGCTT
GGGGGGGGACCGGACGAATGATTCGTATTTGAATGAAGCAAGCAAATTGC
AAGATAAGACCGAGGCGAGCTTGCAATCAGCTTTGGGGATGGTGGAGGCG
ACGAAGAAAGTGGGCGCGAATACGGTGGTTGAGCTCAAGAGGCAAACGGA
TCAGATTGCCGATATCACTGACACGGTGGATGCGATGGAGAATGGGCTGA
CCCGTGCTGACAAGTTAATTCGGGCGTTCGGGCGGAGGATTGCCACGGAT
AAATTCATTCAATTCTTTTTTGTTCTGAATTGTATGTTGCTTATTGGGAT
AGTGACCTGGTATGCGGTAAAGAAGGGGAAAATTAAGCCACCTCATCTTA
ACACTCCTCCTCTCCCCACT
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protein sequence of jgi.p|Nanoce1779_2|517000

>mRNA_1012-protein ID=mRNA_1012-protein|Name=jgi.p|Nanoce1779_2|517000|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MTDIDYWDGELTSKMTELEQSIGSIKSLFSGDKEACIAKCDSLLKRVREV
KKGYNYEMRMSLRNDPRRHDYAEKLKVADERIAVLETELKWAKSEADKKV
LFKGGAGKGGVDGGGGLGGDRTNDSYLNEASKLQDKTEASLQSALGMVEA
TKKVGANTVVELKRQTDQIADITDTVDAMENGLTRADKLIRAFGRRIATD
KFIQFFFVLNCMLLIGIVTWYAVKKGKIKPPHLNTPPLPT
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mRNA from alignment at scaffold_2:1013118..1014315+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1012 ID=mRNA_1012|Name=jgi.p|Nanoce1779_2|517000|organism=Nannochloropsis oceanica|type=mRNA|length=1198bp|location=Sequence derived from alignment at scaffold_2:1013118..1014315+ (Nannochloropsis oceanica)
ATGACAGACATTGATTACTGGGATGGCGAGCTCACAAGCAAAATGACGGA
GCTGGAGCAGTCGATTGGGAGCATTAAGTCCCTCTTTAGCGGGGATAAGG
AAGCGGTACGTGCGAGGGAGGAGACGGGCGGGACGGAGAGGAGAATGGAG
TTGGGCATGACCTAGGTGTACTGCTCTAGTACTGAGTCATAGAGCAAGCG
GGTAGTCTCATGCAGCTCACAAATTTGCGCGTGGGAGTGGACGGAGGGTG
TTAAGTGCTGCCCATCTGCTTTCAATCTCAAGGTGGGTAGGATGTAGTGC
TGGCGCTTTCTCTGCTTCCCAAAACGGGCATGACAAGATGCCTTGGGCCT
AGGGCTAATGGGAATTCCTTACAATTGCCTTCTCAATCCGACCTTAACGA
GTCGGACTTCCGCATCTTGCCGTACATGCGCCGATCACAGCTGCCCTGGC
CCAAATACCATCTCTTTAGTCCCCGTCCTTGCTGGCCACGCCTTCGCTCT
GCAGCGTGTAGTCTTAGGGTCCGTAGGCCAACCACCTGCATCATAAGTGT
ACTCAAATTCCGACCAACCCCTACCCGAAACAGTGCATCGCCAAGTGCGA
CTCCCTCCTCAAGCGCGTCCGGGAAGTGAAAAAGGGTTACAACTACGAAA
TGCGCATGTCCTTGAGAAATGATCCTCGTCGGCACGACTATGCGGAAAAA
CTCAAGGTAGCCGACGAGCGAATTGCTGTGTTGGAAACCGAGTTAAAATG
GGCGAAGAGCGAAGCGGACAAAAAAGTCTTATTCAAGGGCGGGGCGGGGA
AGGGAGGGGTGGACGGAGGGGGGGGCTTGGGGGGGGACCGGACGAATGAT
TCGTATTTGAATGAAGCAAGCAAATTGCAAGATAAGACCGAGGCGAGCTT
GCAATCAGCTTTGGGGATGGTGGAGGCGACGAAGAAAGTGGGCGCGAATA
CGGTGGTTGAGCTCAAGAGGCAAACGGATCAGATTGCCGATATCACTGAC
ACGGTGGATGCGATGGAGAATGGGCTGACCCGTGCTGACAAGTTAATTCG
GGCGTTCGGGCGGAGGATTGCCACGGATAAATTCATTCAATTCTTTTTTG
TTCTGAATTGTATGTTGCTTATTGGGATAGTGACCTGGTATGCGGTAAAG
AAGGGGAAAATTAAGCCACCTCATCTTAACACTCCTCCTCTCCCCACT
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Coding sequence (CDS) from alignment at scaffold_2:1013118..1014315+

>mRNA_1012 ID=mRNA_1012|Name=jgi.p|Nanoce1779_2|517000|organism=Nannochloropsis oceanica|type=CDS|length=1440bp|location=Sequence derived from alignment at scaffold_2:1013118..1014315+ (Nannochloropsis oceanica)
ATGACAGACATTGATTACTGGGATGGCGAGCTCACAAGCAAAATGACGGA
GCTGGAGCAGTCGATTGGGAGCATTAAGTCCCTCTTTAGCGGGGATAAGG
AAGCGTGCATCGCCAAGTGCGACTCCCTCCTCAAGCGCGTCCGGGAAGTG
AAAAAGGGTTACAACTACGAAATGCGCATGTCCTTGAGAAATGATCCTCG
TCGGCACGACTATGCGGAAAAACTCAAGGTAGCCGACGAGCGAATTGCTG
TGTTGGAAACCGAGTTAAAATGGGCGAAGAGCGAAGCGGACAAAAAAGTC
TTATTCAAGGGCGGGGCGGGGAAGGGAGGGGTGGACGGAGGGGGGGGCTT
GGGGGGGGACCGGACGAATGATTCGTATTTGAATGAAGCAAGCAAATTGC
AAGATAAGACCGAGGCGAGCTTGCAATCAGCTTTGGGGATGGTGGAGGCG
ACGAAGAAAGTGGGCGCGAATACGGTGGTTGAGCTCAAGAGGCAAACGGA
TCAGATTGCCGATATCACTGACACGGTGGATGCGATGGAGAATGGGCTGA
CCCGTGCTGACAAGTTAATTCGGGCGTTCGGGCGGAGGATTGCCACGGAT
AAATTCATTCAATTCTTTTTTGTTCTGAATTGTATGTTGCTTATTGGGAT
AGTGACCTGGTATGCGGTAAAGAAGGGGAAAATTAAGCCACCTCATCTTA
ACACTCCTCCTCTCCCCACTATGACAGACATTGATTACTGGGATGGCGAG
CTCACAAGCAAAATGACGGAGCTGGAGCAGTCGATTGGGAGCATTAAGTC
CCTCTTTAGCGGGGATAAGGAAGCGTGCATCGCCAAGTGCGACTCCCTCC
TCAAGCGCGTCCGGGAAGTGAAAAAGGGTTACAACTACGAAATGCGCATG
TCCTTGAGAAATGATCCTCGTCGGCACGACTATGCGGAAAAACTCAAGGT
AGCCGACGAGCGAATTGCTGTGTTGGAAACCGAGTTAAAATGGGCGAAGA
GCGAAGCGGACAAAAAAGTCTTATTCAAGGGCGGGGCGGGGAAGGGAGGG
GTGGACGGAGGGGGGGGCTTGGGGGGGGACCGGACGAATGATTCGTATTT
GAATGAAGCAAGCAAATTGCAAGATAAGACCGAGGCGAGCTTGCAATCAG
CTTTGGGGATGGTGGAGGCGACGAAGAAAGTGGGCGCGAATACGGTGGTT
GAGCTCAAGAGGCAAACGGATCAGATTGCCGATATCACTGACACGGTGGA
TGCGATGGAGAATGGGCTGACCCGTGCTGACAAGTTAATTCGGGCGTTCG
GGCGGAGGATTGCCACGGATAAATTCATTCAATTCTTTTTTGTTCTGAAT
TGTATGTTGCTTATTGGGATAGTGACCTGGTATGCGGTAAAGAAGGGGAA
AATTAAGCCACCTCATCTTAACACTCCTCCTCTCCCCACT
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Synonyms
Publications