jgi.p|Nanoce1779_2|608811, mRNA_10118 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|608811
Unique NamemRNA_10118
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length400
Alignment locationscaffold_43:31748..32512 +

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Properties
Property NameValue
TranscriptId608897
TrackFilteredModels2
ProteinId608811
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_43supercontigscaffold_43:31748..32512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608811gene_10118Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608811mRNA_10118-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10118CDS_10118Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10118 ID=mRNA_10118|Name=jgi.p|Nanoce1779_2|608811|organism=Nannochloropsis oceanica|type=mRNA|length=400bp
AGGGAGGGAAGGAGGTGGAGGAGGAAAGGGGGGGGGGATGCAGGGAGAGC
TCCCGCCTGGATACGAAGGTGAGGCCTACGAGGAATCTTCCCATGACGCC
TTCCTCTCGTTCCTCCAGCGAGTCTCGCGATGCCCCGGTCAACTACTGCG
TTACGCCTATGGAGGCAACCCCCTCTGGTCGACAAGCCTCCCTCCCTCAC
ATCGTGCCTGGCATGCGGGGCCGCGCGCCGTTTCGAGCTGCAGCTGATGC
CAACCGTGTTGAGTGTTCTCAAGGTAGAGGAGGAGGCATGGAGGGAGGGA
GGGAGGGAGGAGGGGATGGACTGGGGCATGCTGGCTGTGTATTCGTGTGT
TGATAGTTGCCAGGAGGGGAGGGAGGAAGGGGTTCTGGTGCAGCCGGCGG
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protein sequence of jgi.p|Nanoce1779_2|608811

>mRNA_10118-protein ID=mRNA_10118-protein|Name=jgi.p|Nanoce1779_2|608811|organism=Nannochloropsis oceanica|type=polypeptide|length=70bp
MQGELPPGYEGEAYEESSHDAFLSFLQRVSRCPGQLLRYAYGGNPLWSTS
LPPSHRAWHAGPRAVSSCS*
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mRNA from alignment at scaffold_43:31748..32512+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10118 ID=mRNA_10118|Name=jgi.p|Nanoce1779_2|608811|organism=Nannochloropsis oceanica|type=mRNA|length=765bp|location=Sequence derived from alignment at scaffold_43:31748..32512+ (Nannochloropsis oceanica)
AGGGAGGGAAGGAGGTGGAGGAGGAAAGGGGGGGGGGATGCAGGGAGAGG
TGAGTAAAGAGGGAGGGAGGGCGGGGTGAAGGGGAAGGAGAAGGAGGCGG
ATGATGGGATGGAGTAAAGATCCAGTTGGAGGCGTGGACGAGAAATGTTT
CCTCCGATGACGTGACAGGCAAAGCATAAAATACGGAGAAAGAGAGGACG
AAACGATGCCCTGGCACTTAACCCTCCCTCCTTACCTTCCTCCCCCCTTC
CCTTCCCCAGCTCCCGCCTGGATACGAAGGTGAGGCCTACGAGGAATCTT
CCCATGACGCCTTCCTCTCGTTCCTCCAGCGAGTCTCGCGATGCCCCGGT
CAACTACTGCGTTACGCCTATGGAGGTCAGTCCTCCCTCCCACCCTCCCT
CCCTCCCTCTCAGACGGTGCTATGCTCATGGGAGTAGCGCTCTCCTCCCA
CCATTCCCTCGGCCCTCCTCCCTTCCCCCCCCCCCACTCACTTTCTTTTC
CTAACCATCTCAGGCAACCCCCTCTGGTCGACAAGCCTCCCTCCCTCCCT
CCCTCCCTCCCTCACATCGTGCCTGGCATGCGGGGCCGCGCGCCGTTTCG
AGCTGCAGCTGATGCCAACCGTGTTGAGTGTTCTCAAGGTAGAGGAGGAG
GCATGGAGGGAGGGAGGGAGGGAGGAGGGGATGGACTGGGGCATGCTGGC
TGTGTATTCGTGTGTTGATAGTTGCCAGGAGGGGAGGGAGGAAGGGGTTC
TGGTGCAGCCGGCGG
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Coding sequence (CDS) from alignment at scaffold_43:31748..32512+

>mRNA_10118 ID=mRNA_10118|Name=jgi.p|Nanoce1779_2|608811|organism=Nannochloropsis oceanica|type=CDS|length=840bp|location=Sequence derived from alignment at scaffold_43:31748..32512+ (Nannochloropsis oceanica)
ATGCAGGGAGAGCTCCCGCCTGGATACGAAGGTGAGGCCTACGAGGAATC
TTCCCATGACGCCTTCCTCTCGTTCCTCCAGCGAGTCTCGCGATGCCCCG
GTCAACTACTGCGTTACGCCTATGGAGGCAACCCCCTCTGGTCGACAAGC
CTCCCTCCCTCACATCGTGCCTGGCATGCGGGGCCGCGCGCCGTTTCGAG
CTGCAGCTGAATGCAGGGAGAGCTCCCGCCTGGATACGAAGGTGAGGCCT
ACGAGGAATCTTCCCATGACGCCTTCCTCTCGTTCCTCCAGCGAGTCTCG
CGATGCCCCGGTCAACTACTGCGTTACGCCTATGGAGGCAACCCCCTCTG
GTCGACAAGCCTCCCTCCCTCACATCGTGCCTGGCATGCGGGGCCGCGCG
CCGTTTCGAGCTGCAGCTGAATGCAGGGAGAGCTCCCGCCTGGATACGAA
GGTGAGGCCTACGAGGAATCTTCCCATGACGCCTTCCTCTCGTTCCTCCA
GCGAGTCTCGCGATGCCCCGGTCAACTACTGCGTTACGCCTATGGAGGCA
ACCCCCTCTGGTCGACAAGCCTCCCTCCCTCACATCGTGCCTGGCATGCG
GGGCCGCGCGCCGTTTCGAGCTGCAGCTGAATGCAGGGAGAGCTCCCGCC
TGGATACGAAGGTGAGGCCTACGAGGAATCTTCCCATGACGCCTTCCTCT
CGTTCCTCCAGCGAGTCTCGCGATGCCCCGGTCAACTACTGCGTTACGCC
TATGGAGGCAACCCCCTCTGGTCGACAAGCCTCCCTCCCTCACATCGTGC
CTGGCATGCGGGGCCGCGCGCCGTTTCGAGCTGCAGCTGA
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Synonyms
Publications