jgi.p|Nanoce1779_2|608799, mRNA_10117 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|608799
Unique Name	mRNA_10117
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	696
Alignment location	scaffold_43:25654..28113 +

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Properties


Property Name	Value
TranscriptId	608885
Track	FilteredModels2
ProteinId	608799

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_43	supercontig	scaffold_43:25654..28113 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|608799	gene_10117	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|608799	mRNA_10117-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10117	CDS_10117	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_43:25654..28113+
coding sequence from alignment at scaffold_43:25654..28113+

mRNA sequence

>mRNA_10117 ID=mRNA_10117|Name=jgi.p|Nanoce1779_2|608799|organism=Nannochloropsis oceanica|type=mRNA|length=696bp
GGGGGAGGGAGGGAGGGAGGGAGAGGGGAGGAGGTGGAGAAAAAGGAGGA
GGAGGAAGGGGGAGGAGGAGAGGATGGTGATCTTCGCCACAGGCTTCGCA
GTGAACGACTCCCTGTCACAAGTGCGGGTGGTGGGGAGGAACGGCGTGGT
CCTCGAGGAGAAAATCAGGGAGAGAGGCTGGACCTCCTACCTGGGCGTGA
CGACGCAGGACATGCCCAACTTCGGCACAACGCTAGGCAGCAACACCGCT
CTAGGCCACAACTCCATCGTCCTCATGATCGAGGCCGAGGTCGCCTACAT
CGTCAGCTACCTCCGACAGATGAAGACATGTGGCGCCACCGTGTCTCTGC
TCAAGCCAAGCGTCGAGGAGGCCTTCATGGAGGAAATGAGAGGGCGCATG
CGTTCCACGGTCTGGGAAACTGGCGGCTGTCGCTCGTGGTACCTTTCGTC
CCCCTCGGAGAAGCACAGCAACACCACCACCGTCCTCTGGCCGGGACATG
TCCAGGAGTACGTCCGACGCACCCGGGAGGCGGCGATAGGGGAGGAATTC
GACCTGTGGGATGTCGACGGACGACGGATCAGTGCAGAGAGGGCGCGGCG
GCTGGTGGAGGGAGCGAGGGAGGGAGGGAGGGGGAAGGGGGGGTGGAGGG
GCTGGATGAAGTCATGGATTGGGGCGGCTTAGAAGGAGAAAGGCAG

protein sequence of jgi.p|Nanoce1779_2|608799

>mRNA_10117-protein ID=mRNA_10117-protein|Name=jgi.p|Nanoce1779_2|608799|organism=Nannochloropsis oceanica|type=polypeptide|length=157bp
MPNFGTTLGSNTALGHNSIVLMIEAEVAYIVSYLRQMKTCGATVSLLKPS
VEEAFMEEMRGRMRSTVWETGGCRSWYLSSPSEKHSNTTTVLWPGHVQEY
VRRTREAAIGEEFDLWDVDGRRISAERARRLVEGAREGGRGKGGWRGWMK
SWIGAA*

mRNA from alignment at scaffold_43:25654..28113+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10117 ID=mRNA_10117|Name=jgi.p|Nanoce1779_2|608799|organism=Nannochloropsis oceanica|type=mRNA|length=2460bp|location=Sequence derived from alignment at scaffold_43:25654..28113+ (Nannochloropsis oceanica)
GGGGGAGGGAGGGAGGGAGGGAGAGGGGGGGGAGAGGGAGAGGGGGCTGC
TTCCTCCCTGCAAATGCCCGTTCGTTTGTCCCTCTCTCGTCCTCGTCAGC
GGAACGAAAAGGATGAGGCCAGCGGGGGGAAAGGAGGAGGGAGGAGGAGG
AGGAGGAGGAGAGGTTGAGGAGGAGGTGGAGAAAAAGGAGGAGGAGGAAG
GGGGAGGAGGAGAGGAGAAGGACGGAGGAGGAGGAGTCTTAGGATTCTTT
TCTTCTGAGGTAGGCTGAGCAGGAAGATTATGATTATGGGCCCTTAGTCT
GGTACTGGTCGAGCGGGGGAAGGGAGGGTTCTGCTGAGGCGGCAAGGGCT
TGTTTTGGACGTTGGTGATCTTCGCCACAGGTGCGTGCGGAGGGAGGGAT
GGAGGAGGGGATGAGGGATGAAGGAGGGAGGGAGGGAGGGAATAAGTGGG
TGGTGCCCTTTGCGTCTTCCTCCTTGATGACAGACACCATCATATATTCC
CCTCACTGTGCTCCCTTCCTCCCTCCCTTCCTCCCTCCCTCCCTCCAGGC
TTCGCAGTGAACGACTCCCTGTCACAAGTGCGGGTGGTGGGGAGGAACGG
CGTGGTCCTCGAGGAGAAAATCAGGTGGGGAGGGAGGGAGGGAAGGAGGA
AGGGAGGGAGGGAAGGAGGAAGGGAGGGGAGGATGGAGAGAGGGAGGGAG
GCGGCGAGGCCTCAACAGAAAATTTCTCATCCATCAATGTCGCCCTTCAT
TTTCAACCTCTCCCTCCCTCCCTCCCTCCCTCTCTTCCTCCCTCCCTCCC
TTCCTCTCTCCTCCCGCCCTCCCTCCCTCCCTCCCTCCCTTCCTTCCTCC
CTCCCTCCCTCAATCACGCGAGGAGAAGTCCAAGAGTCAACCCCCCTTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCCCTTGTCAGGGAGAGAGGC
TGGACCTCCTACCTGGGCGTGACGACGCAGGACATGCCCAACTTCGGCAC
AACGCTAGGCAGCAACACCGCTCTAGGTCTGTCCCTCCCTCCCTCCCTCC
TTCCCTTCGTGCTTGTCTGACTGTTGCAGCATTATCTTATAGCGCCGGGT
ACGACACTTCTGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCCGT
GCATTCTTCCCTCCCTCCCCTCTGGCCACTCTATTTTACCCAGCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGGCCACAACTCCATCG
TCCTCATGATCGAGGCCGAGGTCGCCTACATCGTCAGCTACCTCCGACAG
GTAGGTAGCTTAGAAGGGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAA
AGGGAGGGAGGGAGGGAGGGAGGGAGAGGCGGATGGCAATGACTTTGTCA
CTGACCTTCTCTGACAGGAAAGGAAGGAGGGAAGGAGGGAGGGAGGAAGG
GAGGGAGGGAGGGAGGGAAGGAAGAGTCAACCGGGGGCTCTAGGTTTTCT
TTGGAGAGAAAGTCACGCAGGCAGCTCTCAAGAATTCACCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTGTAGATGAAGACATGTGGCGCCACCGT
GTCTCTGCTCAAGCCAAGCGTCGAGGAGGCCTTCATGGAGGAAATGAGAG
GGTGAGCGCCTCCCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCTCCTTT
TATCTCGTTCTCGCTTTCTCTCCCTCTGGGGCCACCCTCCACCACACGCT
CAACCCCTTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTAGGCGCATGCGTTCCACGGTCTGGGA
AACTGGCGGCTGTCGCTCGTGGTACCTTTCGTCCCCCTCGGAGAAGCACA
GCAACACCACCACCGTCCTCTGGCCGGGACATGTCCAGGTGCCCCAGCAA
GCCTTCCCTCCCTCCCTTCCTCCCTTCCCTTCCCTTCCCTTTCCGGTCTC
TGCGTCATCTGCGTGATCATCGCATTTTTTATCTTGCGGTATCTTATCCG
TTTCCCCCTCCTCCCCTTACATTTTGTCAGTTTCCCACCCCTCCTCCTTC
CCGCCCTCCTTCCCTCCCTCCTTCCCGCCCTCCCTCTCTCCCTCCTCTCT
CTCCTCCTCTCCTCATCCCTCCCTCCTCCCTCTCCTTCTCTCCTCATCCC
TCCCTCCTCCCTCTCCTTCCCTCCTCATCCCTCCCTCATCCCTCTCCTTC
CCTCCTCATCCCTCCATAGGAGTACGTCCGACGCACCCGGGAGGCGGCGA
TAGGGGAGGAATTCGACCTGTGGGATGTCGACGGACGACGGATCAGTGCA
GAGAGGGCGCGGCGGCTGGTGGAGGGAGCGAGGGAGGGAGGGAGGGGGAA
GGGGGGGTGGAGGGGCTGGATGAAGTCATGGATTGGGGCGGCTTAGAAGG
AGAAAGGCAG

Coding sequence (CDS) from alignment at scaffold_43:25654..28113+

>mRNA_10117 ID=mRNA_10117|Name=jgi.p|Nanoce1779_2|608799|organism=Nannochloropsis oceanica|type=CDS|length=2355bp|location=Sequence derived from alignment at scaffold_43:25654..28113+ (Nannochloropsis oceanica)
ATGCCCAACTTCGGCACAACGCTAGGCAGCAACACCGCTCTAGGCCACAA
CTCCATCGTCCTCATGATCGAGGCCGAGGTCGCCTACATCGTCAGCTACC
TCCGACAGATGAAGACATGTGGCGCCACCGTGTCTCTGCTCAAGCCAAGC
GTCGAGGAGGCCTTCATGGAGGAAATGAGAGGGCGCATGCGTTCCACGGT
CTGGGAAACTGGCGGCTGTCGCTCGTGGTACCTTTCGTCCCCCTCGGAGA
AGCACAGCAACACCACCACCGTCCTCTGGCCGGGACATGTCCAGGAGTAC
GTCCGACGCACCCGGGAGGCGGCGATAGGGGAGGAATTCGACCTGTGGGA
TGTCGACGGACGACGGATCAGTGCAGAGAGGGCGCGGCGGCTGGTGGAGG
GAGCGAGGGAGGGAGGGAGGGGGAAGGGGGGGTGGAGGGGCTGGATGAAG
TCATGGATTGGGGCGGCTTAGATGCCCAACTTCGGCACAACGCTAGGCAG
CAACACCGCTCTAGGCCACAACTCCATCGTCCTCATGATCGAGGCCGAGG
TCGCCTACATCGTCAGCTACCTCCGACAGATGAAGACATGTGGCGCCACC
GTGTCTCTGCTCAAGCCAAGCGTCGAGGAGGCCTTCATGGAGGAAATGAG
AGGGCGCATGCGTTCCACGGTCTGGGAAACTGGCGGCTGTCGCTCGTGGT
ACCTTTCGTCCCCCTCGGAGAAGCACAGCAACACCACCACCGTCCTCTGG
CCGGGACATGTCCAGGAGTACGTCCGACGCACCCGGGAGGCGGCGATAGG
GGAGGAATTCGACCTGTGGGATGTCGACGGACGACGGATCAGTGCAGAGA
GGGCGCGGCGGCTGGTGGAGGGAGCGAGGGAGGGAGGGAGGGGGAAGGGG
GGGTGGAGGGGCTGGATGAAGTCATGGATTGGGGCGGCTTAGATGCCCAA
CTTCGGCACAACGCTAGGCAGCAACACCGCTCTAGGCCACAACTCCATCG
TCCTCATGATCGAGGCCGAGGTCGCCTACATCGTCAGCTACCTCCGACAG
ATGAAGACATGTGGCGCCACCGTGTCTCTGCTCAAGCCAAGCGTCGAGGA
GGCCTTCATGGAGGAAATGAGAGGGCGCATGCGTTCCACGGTCTGGGAAA
CTGGCGGCTGTCGCTCGTGGTACCTTTCGTCCCCCTCGGAGAAGCACAGC
AACACCACCACCGTCCTCTGGCCGGGACATGTCCAGGAGTACGTCCGACG
CACCCGGGAGGCGGCGATAGGGGAGGAATTCGACCTGTGGGATGTCGACG
GACGACGGATCAGTGCAGAGAGGGCGCGGCGGCTGGTGGAGGGAGCGAGG
GAGGGAGGGAGGGGGAAGGGGGGGTGGAGGGGCTGGATGAAGTCATGGAT
TGGGGCGGCTTAGATGCCCAACTTCGGCACAACGCTAGGCAGCAACACCG
CTCTAGGCCACAACTCCATCGTCCTCATGATCGAGGCCGAGGTCGCCTAC
ATCGTCAGCTACCTCCGACAGATGAAGACATGTGGCGCCACCGTGTCTCT
GCTCAAGCCAAGCGTCGAGGAGGCCTTCATGGAGGAAATGAGAGGGCGCA
TGCGTTCCACGGTCTGGGAAACTGGCGGCTGTCGCTCGTGGTACCTTTCG
TCCCCCTCGGAGAAGCACAGCAACACCACCACCGTCCTCTGGCCGGGACA
TGTCCAGGAGTACGTCCGACGCACCCGGGAGGCGGCGATAGGGGAGGAAT
TCGACCTGTGGGATGTCGACGGACGACGGATCAGTGCAGAGAGGGCGCGG
CGGCTGGTGGAGGGAGCGAGGGAGGGAGGGAGGGGGAAGGGGGGGTGGAG
GGGCTGGATGAAGTCATGGATTGGGGCGGCTTAGATGCCCAACTTCGGCA
CAACGCTAGGCAGCAACACCGCTCTAGGCCACAACTCCATCGTCCTCATG
ATCGAGGCCGAGGTCGCCTACATCGTCAGCTACCTCCGACAGATGAAGAC
ATGTGGCGCCACCGTGTCTCTGCTCAAGCCAAGCGTCGAGGAGGCCTTCA
TGGAGGAAATGAGAGGGCGCATGCGTTCCACGGTCTGGGAAACTGGCGGC
TGTCGCTCGTGGTACCTTTCGTCCCCCTCGGAGAAGCACAGCAACACCAC
CACCGTCCTCTGGCCGGGACATGTCCAGGAGTACGTCCGACGCACCCGGG
AGGCGGCGATAGGGGAGGAATTCGACCTGTGGGATGTCGACGGACGACGG
ATCAGTGCAGAGAGGGCGCGGCGGCTGGTGGAGGGAGCGAGGGAGGGAGG
GAGGGGGAAGGGGGGGTGGAGGGGCTGGATGAAGTCATGGATTGGGGCGG
CTTAG

Synonyms

Publications