jgi.p|Nanoce1779_2|608788, mRNA_10115 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|608788
Unique Name	mRNA_10115
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1604
Alignment location	scaffold_43:13399..15843 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	608874
Track	FilteredModels2
ProteinId	608788

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_43	supercontig	scaffold_43:13399..15843 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|608788	gene_10115	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|608788	mRNA_10115-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10115	CDS_10115	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_43:13399..15843+
coding sequence from alignment at scaffold_43:13399..15843+

mRNA sequence

>mRNA_10115 ID=mRNA_10115|Name=jgi.p|Nanoce1779_2|608788|organism=Nannochloropsis oceanica|type=mRNA|length=1604bp
AACAGACCCACCACAACCACAAAGGCTACGCCACATGACGGAGAAAAACA
TACGGGACGCCATGACACCACTACCACCAATACGGGACGCCATGACACCA
CCACCACTACCAAATGATGCGAAGGGTGCCGAGGACGAGACGCTCAACGA
CCTCCCCCTCTCCATTGCCATGAGAAAGGCCACGCGCAAGATCCACCGGG
AGAGCGATGCCCTCGTCAATTTAAAGCTTGTCTATGCATTCACTTACCCT
GCTCTGTATGCTGAAGCCATTGGACTCTTCTACCCCATCTACCGCTCCCT
CGAGTCCCTTATCCTCGCCTCCCCATCTCCCTCCCTCCGTCCCTTCGCCG
CCCTCCTTGTCCAGTTCAAGCTCCAACGCACGGCTGCCTTTGAGGTGGAC
ATTGCATACCACTCTCGCGGAGAATGGATTGAGAAGACAAACGACCCCTC
CTGCCCTCCTGCCCTTCTGACCTACCTTGCTCGCTTGGAAGCCTGCGCGA
AGGACGACCCAGACCTGCTTGTCGTCTATGCCTACCACATGTACATGGCT
TTGCTCAGTGGTGGCCAAATCCTCAAGCGTCTTACCACCAAGTTTCTCCT
GCCCAAAAAAGGGAAAGCAGGCACAGGTGTACAGCAGGATGGAAAGGAGA
AGGGATTGGCGCTCTACACGTTTGAGACAGAACAAACGGAGGAGATCAAG
GCGGCTTTACGGGCGGCGGTTGACGCGGTGGAGGGCAAGGGCGGCGTGAG
AAACACAGAGCGCCGGCAAGCGTTTTTGAACGAGAGCATCCGCCTCTTCC
ACATGAACAACGAGGTCGTCCGTTCCTTCGAGCCTAGTCGGGCAGGTCGC
TGCAAGCTACGTGTGGTGATTTGCCTGGTGCTATTGTCCCTGCTGTTGTT
TCTCGTGCTGCTGGGGAGGGGATTAAGGTGGTGCTTCTCTTTCTCTCCGC
TGTAAAATTGAGCACACAAGCGAGTAAGTGTAGAAAGGAAGAAGAGAAAT
AGAATCGCATCGTTCGTAGATAGCGTTTTGGAAGCCTCGAATTGTATCAA
TGATCTGTCTTGGACGTTTAATCACCCGTGTGATATGTGTTAAGACCTGT
TTTCCATAATGGGAGAGTCTGAAGTAAAGTAATCAAATGGACGACTCGAG
CAACGAGTTACACCCTCGACACCTCTAGCATGTAGCCATTGGCGGTACTT
GTTTGATTCTTTCCCGCTTGGGACACACAAAGCTTGACACGCAGCAGTAT
GAAGGGGCTTCTGATCTACGAGCTTGCAGAGGAACAATGAGACAGGATTA
TTTTCTTGATTCGATTCTGGAGACGAAGAGGCAGTGAGGGACAGCAGGAT
GTCGGACAAGGAAGTAGATGGAAAACGTCAAGCGGAAAATGAAGGGGTGA
CGTAATGGAGCCGACTTTTTTGGAGACAGGATACGGAAGAGGAGGGAGTA
GGAGAGAGAAATGGAGGTGTGGGGGCGTGTGCGCCGGAGAGAGGGATAAG
GACAATATGGCATTTGTCTGATTCCAAAGGAGAAGGAGAGGGGGAGAGGG
AATGGCAGAGAGGGGAGGAATGATGCTGATGCTGCTGGTGCTGCTGGTGC
TGCT

protein sequence of jgi.p|Nanoce1779_2|608788

>mRNA_10115-protein ID=mRNA_10115-protein|Name=jgi.p|Nanoce1779_2|608788|organism=Nannochloropsis oceanica|type=polypeptide|length=307bp
MTEKNIRDAMTPLPPIRDAMTPPPLPNDAKGAEDETLNDLPLSIAMRKAT
RKIHRESDALVNLKLVYAFTYPALYAEAIGLFYPIYRSLESLILASPSPS
LRPFAALLVQFKLQRTAAFEVDIAYHSRGEWIEKTNDPSCPPALLTYLAR
LEACAKDDPDLLVVYAYHMYMALLSGGQILKRLTTKFLLPKKGKAGTGVQ
QDGKEKGLALYTFETEQTEEIKAALRAAVDAVEGKGGVRNTERRQAFLNE
SIRLFHMNNEVVRSFEPSRAGRCKLRVVICLVLLSLLLFLVLLGRGLRWC
FSFSPL*

mRNA from alignment at scaffold_43:13399..15843+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10115 ID=mRNA_10115|Name=jgi.p|Nanoce1779_2|608788|organism=Nannochloropsis oceanica|type=mRNA|length=2445bp|location=Sequence derived from alignment at scaffold_43:13399..15843+ (Nannochloropsis oceanica)
AACAGACCCACCACAACCACAAAGGCTACGCCACATGACGGAGAAAAACA
TACGGGACGCCATGACACCACTACCACCAATACGGGACGCCATGACACCA
CCACCACTACCAAATGATGCGAAGGGTGCCGAGGACGAGACGCTCAACGA
CCTCCCCCTCTCCATTGCCATGAGAAAGGCCACGCGGTGAGAAGGAAGAT
GTGGGTAAAACGATAGAAAAAGTAGGAAAATGGAGGACTGTGCTCTAAAC
GAAAAGCATACATCCTAAACGTGAAGCAGGGTGTGTGAATCCTGCTGCCC
TTGTCCCGTACATCCGTCCTTCCATCCATCTCATACGTTCCCTCTGTTCT
CCCCCTTCCCTGACCCCCTCATTCCGCAGCAAGATCCACCGGGAGAGCGA
TGCCCTCGTCAATTTAAAGCTTGTCTATGCATTCACTTACCCTGCTCTGT
ATGCTGAAGCCATTGGACTCTTCTACCCCATGTAAGAAAGGGAGGCTGCG
GAGAATGAAGGGAGGAGAAAGAAAGGCTGGTAAGGGAGGAGGGCATCCCT
GGCCGATGCATATTCCGATATAAGGAGGCAAAAGCTTGCATGCCTCCTTA
CTCTCATATACGCCTGCATCATTCTCTCCATCCACACCATTCGCTTTCTC
CTCTCTACCCCACAACAGCTACCGCTCCCTCGAGTCCCTTATCCTCGCCT
CCCCATCTCCCTCCCTCCGTCCCTTCGCCGCCCTCCTTGTCCAGTTCAAG
CTCCAACGCACGGCTGCCTTTGAGGTGGACATTGCATACCACTCTCGCGG
AGAATGGATTGAGAAGACAAACGACCCCTCCTGCCCTCCTGCCCTTCTGA
CCTACCTTGCTCGCTTGGAAGCCTGCGCGAAGGACGACCCAGACCTGCTT
GTCGTCTATGCCTACCACATGTACATGGCTTTGCTCAGTGGTACGTCCCA
TGGTTGGAATGGCTTCTTCTTCTTCGATCTATCTCTTCCGCCTTGGTGCT
GCCTTCTCTGGCCGGTGCCAGCATTCTAACCAAGTCCCTCGTGCTCGAAT
GCAGGAGCCCCCTCCTTCCCTCTCTCCCCCTCTGTCGACCTGCCTCGCAT
TCCTTCACCGTATTTACTTACTCACAAGCTATGTGTCGGTCGCTACTCTT
CCAGCCCCCGAAATTATTTAAATCGTTTCACCTATACTTACCATCTTTCC
TACGCCCCCGCCCTCCTTCCTATCCCTCCCTCTCACCCCTCCCTCCTCCC
TTCTGGCAGGTGGCCAAATCCTCAAGCGTCTTACCACCAAGTTTCTCCTG
CCCAAAAAAGGGAAAGCAGGCACAGGTGTACAGCAGGATGGAAAGGAGAA
GGGATTGGCGCTCTACACGTTTGAGACAGAACAAACGGAGGAGATCAAGG
CGGCTTTACGGGCGGCGGTTGACGCGGTGGAGGGCAAGGGCGGCGTGAGA
AACACAGAGGTATGCGCCTGCTTGGATTTATATGCCCCAAGATCATTCAG
TATTACTTAGATGAGACCTTCATTACCCCCAGCCTCTGAATATAAAGAAA
AACATTCATTATATACACCATACCGTTTCGCCCTCCTCTCCTTCCTCACA
GCGCCGGCAAGCGTTTTTGAACGAGAGCATCCGCCTCTTCCACATGAACA
ACGAGGTCGTCCGTTCCTTCGAGCCTAGTCGGGCAGGTCGCTGCAAGCTA
CGTGTGGTGATTTGCCTGGTGCTATTGTCCCTGCTGTTGTTTCTCGTGCT
GCTGGGGAGGGGATTAAGGTGGTGCTTCTCTTTCTCTCCGCTGTAAAATT
GAGCACACAAGCGAGTAAGTGTAGAAAGGAAGAAGAGAAATAGAATCGCA
TCGTTCGTAGATAGCGTTTTGGAAGCCTCGAATTGTATCAATGATCTGTC
TTGGACGTTTAATCACCCGTGTGATATGTGTTAAGACCTGTTTTCCATAA
TGGGAGAGTCTGAAGTAAAGTAATCAAATGGACGACTCGAGCAACGAGTT
ACACCCTCGACACCTCTAGCATGTAGCCATTGGCGGTACTTGTTTGATTC
TTTCCCGCTTGGGACACACAAAGCTTGACACGCAGCAGTATGAAGGGGCT
TCTGATCTACGAGCTTGCAGAGGAACAATGAGACAGGATTATTTTCTTGA
TTCGATTCTGGAGACGAAGAGGCAGTGAGGGACAGCAGGATGTCGGACAA
GGAAGTAGATGGAAAACGTCAAGCGGAAAATGAAGGGGTGACGTAATGGA
GCCGACTTTTTTGGAGACAGGATACGGAAGAGGAGGGAGTAGGAGAGAGA
AATGGAGGTGTGGGGGCGTGTGCGCCGGAGAGAGGGATAAGGACAATATG
GCATTTGTCTGATTCCAAAGGAGAAGGAGAGGGGGAGAGGGAATGGCAGA
GAGGGGAGGAATGATGCTGATGCTGCTGGTGCTGCTGGTGCTGCT

Coding sequence (CDS) from alignment at scaffold_43:13399..15843+

>mRNA_10115 ID=mRNA_10115|Name=jgi.p|Nanoce1779_2|608788|organism=Nannochloropsis oceanica|type=CDS|length=4605bp|location=Sequence derived from alignment at scaffold_43:13399..15843+ (Nannochloropsis oceanica)
ATGACGGAGAAAAACATACGGGACGCCATGACACCACTACCACCAATACG
GGACGCCATGACACCACCACCACTACCAAATGATGCGAAGGGTGCCGAGG
ACGAGACGCTCAACGACCTCCCCCTCTCCATTGCCATGAGAAAGGCCACG
CGCAAGATCCACCGGGAGAGCGATGCCCTCGTCAATTTAAAGCTTGTCTA
TGCATTCACTTACCCTGCTCTGTATGCTGAAGCCATTGGACTCTTCTACC
CCATCTACCGCTCCCTCGAGTCCCTTATCCTCGCCTCCCCATCTCCCTCC
CTCCGTCCCTTCGCCGCCCTCCTTGTCCAGTTCAAGCTCCAACGCACGGC
TGCCTTTGAGGTGGACATTGCATACCACTCTCGCGGAGAATGGATTGAGA
AGACAAACGACCCCTCCTGCCCTCCTGCCCTTCTGACCTACCTTGCTCGC
TTGGAAGCCTGCGCGAAGGACGACCCAGACCTGCTTGTCGTCTATGCCTA
CCACATGTACATGGCTTTGCTCAGTGGTGGCCAAATCCTCAAGCGTCTTA
CCACCAAGTTTCTCCTGCCCAAAAAAGGGAAAGCAGGCACAGGTGTACAG
CAGGATGGAAAGGAGAAGGGATTGGCGCTCTACACGTTTGAGACAGAACA
AACGGAGGAGATCAAGGCGGCTTTACGGGCGGCGGTTGACGCGGTGGAGG
GCAAGGGCGGCGTGAGAAACACAGAGCGCCGGCAAGCGTTTTTGAACGAG
AGCATCCGCCTCTTCCACATGAACAACGAGGTCGTCCGTTCCTTCGAGCC
TAGTCGGGCAGGTCGCTGCAAGCTACGTGTGGTGATTTGCCTGGTGCTAT
TGTCCCTGCTGTTGTTTCTCGTGCTGCTGGGGAGGGGATTAAGGTGGTGC
TTCTCTTTCTCTCCGCTGTAAATGACGGAGAAAAACATACGGGACGCCAT
GACACCACTACCACCAATACGGGACGCCATGACACCACCACCACTACCAA
ATGATGCGAAGGGTGCCGAGGACGAGACGCTCAACGACCTCCCCCTCTCC
ATTGCCATGAGAAAGGCCACGCGCAAGATCCACCGGGAGAGCGATGCCCT
CGTCAATTTAAAGCTTGTCTATGCATTCACTTACCCTGCTCTGTATGCTG
AAGCCATTGGACTCTTCTACCCCATCTACCGCTCCCTCGAGTCCCTTATC
CTCGCCTCCCCATCTCCCTCCCTCCGTCCCTTCGCCGCCCTCCTTGTCCA
GTTCAAGCTCCAACGCACGGCTGCCTTTGAGGTGGACATTGCATACCACT
CTCGCGGAGAATGGATTGAGAAGACAAACGACCCCTCCTGCCCTCCTGCC
CTTCTGACCTACCTTGCTCGCTTGGAAGCCTGCGCGAAGGACGACCCAGA
CCTGCTTGTCGTCTATGCCTACCACATGTACATGGCTTTGCTCAGTGGTG
GCCAAATCCTCAAGCGTCTTACCACCAAGTTTCTCCTGCCCAAAAAAGGG
AAAGCAGGCACAGGTGTACAGCAGGATGGAAAGGAGAAGGGATTGGCGCT
CTACACGTTTGAGACAGAACAAACGGAGGAGATCAAGGCGGCTTTACGGG
CGGCGGTTGACGCGGTGGAGGGCAAGGGCGGCGTGAGAAACACAGAGCGC
CGGCAAGCGTTTTTGAACGAGAGCATCCGCCTCTTCCACATGAACAACGA
GGTCGTCCGTTCCTTCGAGCCTAGTCGGGCAGGTCGCTGCAAGCTACGTG
TGGTGATTTGCCTGGTGCTATTGTCCCTGCTGTTGTTTCTCGTGCTGCTG
GGGAGGGGATTAAGGTGGTGCTTCTCTTTCTCTCCGCTGTAAATGACGGA
GAAAAACATACGGGACGCCATGACACCACTACCACCAATACGGGACGCCA
TGACACCACCACCACTACCAAATGATGCGAAGGGTGCCGAGGACGAGACG
CTCAACGACCTCCCCCTCTCCATTGCCATGAGAAAGGCCACGCGCAAGAT
CCACCGGGAGAGCGATGCCCTCGTCAATTTAAAGCTTGTCTATGCATTCA
CTTACCCTGCTCTGTATGCTGAAGCCATTGGACTCTTCTACCCCATCTAC
CGCTCCCTCGAGTCCCTTATCCTCGCCTCCCCATCTCCCTCCCTCCGTCC
CTTCGCCGCCCTCCTTGTCCAGTTCAAGCTCCAACGCACGGCTGCCTTTG
AGGTGGACATTGCATACCACTCTCGCGGAGAATGGATTGAGAAGACAAAC
GACCCCTCCTGCCCTCCTGCCCTTCTGACCTACCTTGCTCGCTTGGAAGC
CTGCGCGAAGGACGACCCAGACCTGCTTGTCGTCTATGCCTACCACATGT
ACATGGCTTTGCTCAGTGGTGGCCAAATCCTCAAGCGTCTTACCACCAAG
TTTCTCCTGCCCAAAAAAGGGAAAGCAGGCACAGGTGTACAGCAGGATGG
AAAGGAGAAGGGATTGGCGCTCTACACGTTTGAGACAGAACAAACGGAGG
AGATCAAGGCGGCTTTACGGGCGGCGGTTGACGCGGTGGAGGGCAAGGGC
GGCGTGAGAAACACAGAGCGCCGGCAAGCGTTTTTGAACGAGAGCATCCG
CCTCTTCCACATGAACAACGAGGTCGTCCGTTCCTTCGAGCCTAGTCGGG
CAGGTCGCTGCAAGCTACGTGTGGTGATTTGCCTGGTGCTATTGTCCCTG
CTGTTGTTTCTCGTGCTGCTGGGGAGGGGATTAAGGTGGTGCTTCTCTTT
CTCTCCGCTGTAAATGACGGAGAAAAACATACGGGACGCCATGACACCAC
TACCACCAATACGGGACGCCATGACACCACCACCACTACCAAATGATGCG
AAGGGTGCCGAGGACGAGACGCTCAACGACCTCCCCCTCTCCATTGCCAT
GAGAAAGGCCACGCGCAAGATCCACCGGGAGAGCGATGCCCTCGTCAATT
TAAAGCTTGTCTATGCATTCACTTACCCTGCTCTGTATGCTGAAGCCATT
GGACTCTTCTACCCCATCTACCGCTCCCTCGAGTCCCTTATCCTCGCCTC
CCCATCTCCCTCCCTCCGTCCCTTCGCCGCCCTCCTTGTCCAGTTCAAGC
TCCAACGCACGGCTGCCTTTGAGGTGGACATTGCATACCACTCTCGCGGA
GAATGGATTGAGAAGACAAACGACCCCTCCTGCCCTCCTGCCCTTCTGAC
CTACCTTGCTCGCTTGGAAGCCTGCGCGAAGGACGACCCAGACCTGCTTG
TCGTCTATGCCTACCACATGTACATGGCTTTGCTCAGTGGTGGCCAAATC
CTCAAGCGTCTTACCACCAAGTTTCTCCTGCCCAAAAAAGGGAAAGCAGG
CACAGGTGTACAGCAGGATGGAAAGGAGAAGGGATTGGCGCTCTACACGT
TTGAGACAGAACAAACGGAGGAGATCAAGGCGGCTTTACGGGCGGCGGTT
GACGCGGTGGAGGGCAAGGGCGGCGTGAGAAACACAGAGCGCCGGCAAGC
GTTTTTGAACGAGAGCATCCGCCTCTTCCACATGAACAACGAGGTCGTCC
GTTCCTTCGAGCCTAGTCGGGCAGGTCGCTGCAAGCTACGTGTGGTGATT
TGCCTGGTGCTATTGTCCCTGCTGTTGTTTCTCGTGCTGCTGGGGAGGGG
ATTAAGGTGGTGCTTCTCTTTCTCTCCGCTGTAAATGACGGAGAAAAACA
TACGGGACGCCATGACACCACTACCACCAATACGGGACGCCATGACACCA
CCACCACTACCAAATGATGCGAAGGGTGCCGAGGACGAGACGCTCAACGA
CCTCCCCCTCTCCATTGCCATGAGAAAGGCCACGCGCAAGATCCACCGGG
AGAGCGATGCCCTCGTCAATTTAAAGCTTGTCTATGCATTCACTTACCCT
GCTCTGTATGCTGAAGCCATTGGACTCTTCTACCCCATCTACCGCTCCCT
CGAGTCCCTTATCCTCGCCTCCCCATCTCCCTCCCTCCGTCCCTTCGCCG
CCCTCCTTGTCCAGTTCAAGCTCCAACGCACGGCTGCCTTTGAGGTGGAC
ATTGCATACCACTCTCGCGGAGAATGGATTGAGAAGACAAACGACCCCTC
CTGCCCTCCTGCCCTTCTGACCTACCTTGCTCGCTTGGAAGCCTGCGCGA
AGGACGACCCAGACCTGCTTGTCGTCTATGCCTACCACATGTACATGGCT
TTGCTCAGTGGTGGCCAAATCCTCAAGCGTCTTACCACCAAGTTTCTCCT
GCCCAAAAAAGGGAAAGCAGGCACAGGTGTACAGCAGGATGGAAAGGAGA
AGGGATTGGCGCTCTACACGTTTGAGACAGAACAAACGGAGGAGATCAAG
GCGGCTTTACGGGCGGCGGTTGACGCGGTGGAGGGCAAGGGCGGCGTGAG
AAACACAGAGCGCCGGCAAGCGTTTTTGAACGAGAGCATCCGCCTCTTCC
ACATGAACAACGAGGTCGTCCGTTCCTTCGAGCCTAGTCGGGCAGGTCGC
TGCAAGCTACGTGTGGTGATTTGCCTGGTGCTATTGTCCCTGCTGTTGTT
TCTCGTGCTGCTGGGGAGGGGATTAAGGTGGTGCTTCTCTTTCTCTCCGC
TGTAA

Synonyms

Publications