jgi.p|Nanoce1779_2|624142, mRNA_10113 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|624142
Unique NamemRNA_10113
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length249
Alignment locationscaffold_43:5110..5618 -

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Properties
Property NameValue
TranscriptId624228
TrackFilteredModels2
ProteinId624142
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_43supercontigscaffold_43:5110..5618 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|624142gene_10113Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|624142mRNA_10113-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10113CDS_10113Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10113 ID=mRNA_10113|Name=jgi.p|Nanoce1779_2|624142|organism=Nannochloropsis oceanica|type=mRNA|length=249bp
ATGAAGCAGGATGAGCTGGCCATGGACCTCTTCGACGACCACGCCGTCCC
CTACCAAATCGTCTTGACCAAAATGGACGCCCTCCGCAGCCAAGCCGCGA
GGATCAAGACCCTGACGCAGGTCCTCCACACATGCACGCAACGCCGACAC
ACCGCTTGCTGGCCTGTGGTATACACCACCAGCAGCAAGACGGGCGAGGG
CGTCCAAGAGCTCCGGGAGTGCCTGGCCGGTGTCGTCTACAATGAGTGA
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protein sequence of jgi.p|Nanoce1779_2|624142

>mRNA_10113-protein ID=mRNA_10113-protein|Name=jgi.p|Nanoce1779_2|624142|organism=Nannochloropsis oceanica|type=polypeptide|length=83bp
MKQDELAMDLFDDHAVPYQIVLTKMDALRSQAARIKTLTQVLHTCTQRRH
TACWPVVYTTSSKTGEGVQELRECLAGVVYNE*
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mRNA from alignment at scaffold_43:5110..5618-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10113 ID=mRNA_10113|Name=jgi.p|Nanoce1779_2|624142|organism=Nannochloropsis oceanica|type=mRNA|length=509bp|location=Sequence derived from alignment at scaffold_43:5110..5618- (Nannochloropsis oceanica)
ATGAAGCAGGATGAGGTAAGGGTGGTTTGCCTTCCCTTACCCCCCCCCCC
CTTCCTCCATCTTTCATTCTTTTTTCCCTTCCCTTTCTTTCCTCTTTTTC
TTTTTGTTTCTTCATTTCACTCTTCCTGATTCCGTCTGATCCCCTTTGTC
ACTCTATCTCTCCTCCCTCCCTCCCTCCCTCAGCTGGCCATGGACCTCTT
CGACGACCACGCCGTCCCCTACCAAATCGTCTTGACCAAAATGGACGCCC
TCCGCAGCCAAGCCGCGAGGATCAAGACCCTGACGCAGGTGCTGCCACGA
GGAGGAGGAGGGTGATGATGACAAGGGGCGAAATGTTTGAACTCACTTAC
CTTCCCTCCCTCGCTCCCTCCCTCCCGCAGGTCCTCCACACATGCACGCA
ACGCCGACACACCGCTTGCTGGCCTGTGGTATACACCACCAGCAGCAAGA
CGGGCGAGGGCGTCCAAGAGCTCCGGGAGTGCCTGGCCGGTGTCGTCTAC
AATGAGTGA
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Coding sequence (CDS) from alignment at scaffold_43:5110..5618-

>mRNA_10113 ID=mRNA_10113|Name=jgi.p|Nanoce1779_2|624142|organism=Nannochloropsis oceanica|type=CDS|length=747bp|location=Sequence derived from alignment at scaffold_43:5110..5618- (Nannochloropsis oceanica)
GTCCTCCACACATGCACGCAACGCCGACACACCGCTTGCTGGCCTGTGGT
ATACACCACCAGCAGCAAGACGGGCGAGGGCGTCCAAGAGCTCCGGGAGT
GCCTGGCCGGTGTCGTCTACAATGAGTGACTGGCCATGGACCTCTTCGAC
GACCACGCCGTCCCCTACCAAATCGTCTTGACCAAAATGGACGCCCTCCG
CAGCCAAGCCGCGAGGATCAAGACCCTGACGCAGATGAAGCAGGATGAGG
TCCTCCACACATGCACGCAACGCCGACACACCGCTTGCTGGCCTGTGGTA
TACACCACCAGCAGCAAGACGGGCGAGGGCGTCCAAGAGCTCCGGGAGTG
CCTGGCCGGTGTCGTCTACAATGAGTGACTGGCCATGGACCTCTTCGACG
ACCACGCCGTCCCCTACCAAATCGTCTTGACCAAAATGGACGCCCTCCGC
AGCCAAGCCGCGAGGATCAAGACCCTGACGCAGATGAAGCAGGATGAGGT
CCTCCACACATGCACGCAACGCCGACACACCGCTTGCTGGCCTGTGGTAT
ACACCACCAGCAGCAAGACGGGCGAGGGCGTCCAAGAGCTCCGGGAGTGC
CTGGCCGGTGTCGTCTACAATGAGTGACTGGCCATGGACCTCTTCGACGA
CCACGCCGTCCCCTACCAAATCGTCTTGACCAAAATGGACGCCCTCCGCA
GCCAAGCCGCGAGGATCAAGACCCTGACGCAGATGAAGCAGGATGAG
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Synonyms
Publications