jgi.p|Nanoce1779_2|633761, mRNA_10110 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|633761
Unique NamemRNA_10110
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length691
Alignment locationscaffold_43:308..1074 -

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Properties
Property NameValue
TranscriptId633847
TrackFilteredModels2
ProteinId633761
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_43supercontigscaffold_43:308..1074 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633761gene_10110Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633761mRNA_10110-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10110CDS_10110Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10110 ID=mRNA_10110|Name=jgi.p|Nanoce1779_2|633761|organism=Nannochloropsis oceanica|type=mRNA|length=691bp
ATGCCCCCCACCTCCTCCCTCGCACGTGCCACCCCCCGGCAGCGGCTGCG
CATGCAGGACTCGTATTTGACAAGCCTACAAGAGGTCACTAACACCACCA
TCACTAGCAGCAGCAGTACTGCCAGTCCTGTGGCTGTGGAAGGAGGCAAG
GAGAAGAAGAAAGTGGTGGTGATCGGGGCGGGCTGGGGCGGTCTTAGTGC
GGCGTACGAGCTGGCGAAGCGGTCGGAAGAATACGACGTGACGCTTTTGG
AGGCCGGGCCCTCGGTGGGTGGACTGGTTGCGGGGTGGAAGACTCAAGGT
GAGGGGAGGCAGGGGGAAGAAGCAGCAGCAGAAGGAGGGGACGGCGCGAT
GAAAGCAGAAGCGGGCATGATGATGGACAGGATGAAAGGTCGATTACTTT
CTTCCATCCAAAGGACGGACGGATAAATCGCGTTTGTGGGAAGGAGGATC
ACCGGGATTGATGGTTGGTGTCGAAGCCATCGGCGCTCGAGATTCAAACT
TCTCTTCTTCCCTTCTCACTGTATTCGTGTGCATGCGTATTCGCTGCTTA
CACATATATTCGTAACTATACGTTAAAACATGATCTATTTCTTCCACATA
TCTCTTCTCTTCTCCGAGCAGGCGGGAAGAGCATCGAGGCGGGCGTGCAC
GGCTTCTGGTACTGCTACCGCAACGTCTTCAACCTCGTGGT
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protein sequence of jgi.p|Nanoce1779_2|633761

>mRNA_10110-protein ID=mRNA_10110-protein|Name=jgi.p|Nanoce1779_2|633761|organism=Nannochloropsis oceanica|type=polypeptide|length=142bp
MPPTSSLARATPRQRLRMQDSYLTSLQEVTNTTITSSSSTASPVAVEGGK
EKKKVVVIGAGWGGLSAAYELAKRSEEYDVTLLEAGPSVGGLVAGWKTQG
EGRQGEEAAAEGGDGAMKAEAGMMMDRMKGRLLSSIQRTDG*
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mRNA from alignment at scaffold_43:308..1074-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10110 ID=mRNA_10110|Name=jgi.p|Nanoce1779_2|633761|organism=Nannochloropsis oceanica|type=mRNA|length=767bp|location=Sequence derived from alignment at scaffold_43:308..1074- (Nannochloropsis oceanica)
ATGCCCCCCACCTCCTCCCTCGCACGTGCCACCCCCCGGCAGCGGCTGCG
CATGCAGGACTCGTATTTGACAAGCCTACAAGAGGTCACTAACACCACCA
TCACTAGCAGCAGCAGTACTGCCAGTCCTGTGGCTGTGGAAGGAGGCAAG
GAGAAGAAGAAAGTGGTGGTGATCGGGGCGGGCTGGGGCGGTCTTAGTGC
GGCGTACGAGCTGGCGAAGCGGTGCGTTATAAATCTTTGGGAAGGGCATG
AATATCACTCACAACTCACCCCTGTTGTTTTTCCTGACACAACTAAGGTC
GGAAGAATACGACGTGACGCTTTTGGAGGCCGGGCCCTCGGTGGGTGGAC
TGGTTGCGGGGTGGAAGACTCAAGGTGAGGGGAGGCAGGGGGAAGAAGCA
GCAGCAGAAGGAGGGGACGGCGCGATGAAAGCAGAAGCGGGCATGATGAT
GGACAGGATGAAAGGTCGATTACTTTCTTCCATCCAAAGGACGGACGGAT
AAATCGCGTTTGTGGGAAGGAGGATCACCGGGATTGATGGTTGGTGTCGA
AGCCATCGGCGCTCGAGATTCAAACTTCTCTTCTTCCCTTCTCACTGTAT
TCGTGTGCATGCGTATTCGCTGCTTACACATATATTCGTAACTATACGTT
AAAACATGATCTATTTCTTCCACATATCTCTTCTCTTCTCCGAGCAGGCG
GGAAGAGCATCGAGGCGGGCGTGCACGGCTTCTGGTACTGCTACCGCAAC
GTCTTCAACCTCGTGGT
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Coding sequence (CDS) from alignment at scaffold_43:308..1074-

>mRNA_10110 ID=mRNA_10110|Name=jgi.p|Nanoce1779_2|633761|organism=Nannochloropsis oceanica|type=CDS|length=852bp|location=Sequence derived from alignment at scaffold_43:308..1074- (Nannochloropsis oceanica)
GTCGGAAGAATACGACGTGACGCTTTTGGAGGCCGGGCCCTCGGTGGGTG
GACTGGTTGCGGGGTGGAAGACTCAAGGTGAGGGGAGGCAGGGGGAAGAA
GCAGCAGCAGAAGGAGGGGACGGCGCGATGAAAGCAGAAGCGGGCATGAT
GATGGACAGGATGAAAGGTCGATTACTTTCTTCCATCCAAAGGACGGACG
GATAAATGCCCCCCACCTCCTCCCTCGCACGTGCCACCCCCCGGCAGCGG
CTGCGCATGCAGGACTCGTATTTGACAAGCCTACAAGAGGTCACTAACAC
CACCATCACTAGCAGCAGCAGTACTGCCAGTCCTGTGGCTGTGGAAGGAG
GCAAGGAGAAGAAGAAAGTGGTGGTGATCGGGGCGGGCTGGGGCGGTCTT
AGTGCGGCGTACGAGCTGGCGAAGCGGTCGGAAGAATACGACGTGACGCT
TTTGGAGGCCGGGCCCTCGGTGGGTGGACTGGTTGCGGGGTGGAAGACTC
AAGGTGAGGGGAGGCAGGGGGAAGAAGCAGCAGCAGAAGGAGGGGACGGC
GCGATGAAAGCAGAAGCGGGCATGATGATGGACAGGATGAAAGGTCGATT
ACTTTCTTCCATCCAAAGGACGGACGGATAAATGCCCCCCACCTCCTCCC
TCGCACGTGCCACCCCCCGGCAGCGGCTGCGCATGCAGGACTCGTATTTG
ACAAGCCTACAAGAGGTCACTAACACCACCATCACTAGCAGCAGCAGTAC
TGCCAGTCCTGTGGCTGTGGAAGGAGGCAAGGAGAAGAAGAAAGTGGTGG
TGATCGGGGCGGGCTGGGGCGGTCTTAGTGCGGCGTACGAGCTGGCGAAG
CG
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Synonyms
Publications