jgi.p|Nanoce1779_2|575019, mRNA_1011 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575019
Unique NamemRNA_1011
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length440
Alignment locationscaffold_2:1012043..1012647 -

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Properties
Property NameValue
TranscriptId575105
TrackFilteredModels2
ProteinId575019
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1012043..1012647 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575019gene_1011Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575019mRNA_1011-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1011CDS_1011Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1011 ID=mRNA_1011|Name=jgi.p|Nanoce1779_2|575019|organism=Nannochloropsis oceanica|type=mRNA|length=440bp
CAGCCTCCCCACCCCCTCCGTCACTACTATAGGCATGTCTACGACACCCG
CTTCGGCCTTGGTCCTTTACCGCCGGGTACTGCGCAGTCTGCGGCAATTT
GATGATCCGGGGAAGAAATGGTATTATCGAAATTGGGCGCGCAATAACAT
CGCCACGTTCGATGACGAAGAAGACTCGGAGCGGCTTGTGCAGTTGTTGA
GAAAGGGAGAAGAACATCGTTCGTGGATTCTCAAGAAATATAGATTGCCT
GATCCATTGGCAGGCAAATTATGAAATTACGGTGGAGGCATCAGCAGGCA
AAATGATGAAAATATGACGTGGACATTGACAGGCAAATGATGAAAATACG
ACGGAAACAGTGACCTGAAGAGGCTAGTGTATAACAAGCTTTTGAAAAGG
AAGCAGGCGAAAAGAAGCACTCATGCTGCTTTCCATCTCC
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protein sequence of jgi.p|Nanoce1779_2|575019

>mRNA_1011-protein ID=mRNA_1011-protein|Name=jgi.p|Nanoce1779_2|575019|organism=Nannochloropsis oceanica|type=polypeptide|length=80bp
MSTTPASALVLYRRVLRSLRQFDDPGKKWYYRNWARNNIATFDDEEDSER
LVQLLRKGEEHRSWILKKYRLPDPLAGKL*
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mRNA from alignment at scaffold_2:1012043..1012647-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1011 ID=mRNA_1011|Name=jgi.p|Nanoce1779_2|575019|organism=Nannochloropsis oceanica|type=mRNA|length=605bp|location=Sequence derived from alignment at scaffold_2:1012043..1012647- (Nannochloropsis oceanica)
CAGCCTCCCCACCCCCTCCGTCACTACTATAGGCATGTCTACGACACCCG
CTTCGGCCTTGGTCCTTTACCGCCGGGTACTGCGCAGTCTGCGGCAATTT
GATGATCCGGGGAAGAAATGGTACGTGCCTGCATGATAATTTGCGGGTGC
ATTGAGTAGATGGCGCCGATAAAGCCTGCATGTACTGTGCTCTTGCTTCG
ACGTCAATTTATTCATCCCCTTTATCAACTACACAGTATTAATCCACACA
ATTTTCACCTCCACATGCTCACTTCGAATAAAAAGGTATTATCGAAATTG
GGCGCGCAATAACATCGCCACGTTCGATGACGAAGAAGACTCGGAGCGGC
TTGTGCAGTTGTTGAGAAAGGGAGAAGAACATCGTTCGTGGATTCTCAAG
AAATATAGATTGCCTGATCCATTGGCAGGCAAATTATGAAATTACGGTGG
AGGCATCAGCAGGCAAAATGATGAAAATATGACGTGGACATTGACAGGCA
AATGATGAAAATACGACGGAAACAGTGACCTGAAGAGGCTAGTGTATAAC
AAGCTTTTGAAAAGGAAGCAGGCGAAAAGAAGCACTCATGCTGCTTTCCA
TCTCC
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Coding sequence (CDS) from alignment at scaffold_2:1012043..1012647-

>mRNA_1011 ID=mRNA_1011|Name=jgi.p|Nanoce1779_2|575019|organism=Nannochloropsis oceanica|type=CDS|length=480bp|location=Sequence derived from alignment at scaffold_2:1012043..1012647- (Nannochloropsis oceanica)
GTATTATCGAAATTGGGCGCGCAATAACATCGCCACGTTCGATGACGAAG
AAGACTCGGAGCGGCTTGTGCAGTTGTTGAGAAAGGGAGAAGAACATCGT
TCGTGGATTCTCAAGAAATATAGATTGCCTGATCCATTGGCAGGCAAATT
ATGAATGTCTACGACACCCGCTTCGGCCTTGGTCCTTTACCGCCGGGTAC
TGCGCAGTCTGCGGCAATTTGATGATCCGGGGAAGAAATGGTATTATCGA
AATTGGGCGCGCAATAACATCGCCACGTTCGATGACGAAGAAGACTCGGA
GCGGCTTGTGCAGTTGTTGAGAAAGGGAGAAGAACATCGTTCGTGGATTC
TCAAGAAATATAGATTGCCTGATCCATTGGCAGGCAAATTATGAATGTCT
ACGACACCCGCTTCGGCCTTGGTCCTTTACCGCCGGGTACTGCGCAGTCT
GCGGCAATTTGATGATCCGGGGAAGAAATG
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Synonyms
Publications