jgi.p|Nanoce1779_2|626393, mRNA_10106 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|626393
Unique Name	mRNA_10106
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1619
Alignment location	scaffold_46:154957..157365 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	626479
Track	FilteredModels2
ProteinId	626393

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_46	supercontig	scaffold_46:154957..157365 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|626393	gene_10106	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|626393	mRNA_10106-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10106	CDS_10106	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_46:154957..157365+
coding sequence from alignment at scaffold_46:154957..157365+

mRNA sequence

>mRNA_10106 ID=mRNA_10106|Name=jgi.p|Nanoce1779_2|626393|organism=Nannochloropsis oceanica|type=mRNA|length=1619bp
TCTCGGATCCGGAGAAGAAGAAGGTGAGGGGAGACAGGAGGGAGGGATGA
AAGGAGGGAAGGTCGCCAACAAACACCGGAGTGAGGCTCTCATCGCAATT
TTGCTTCTTCTACATTTTGCCATCCGGGGAGCAGATGACAGCCACAGAGA
CTTGACAAGGTAAAATGTCTCTCTTTTCAGCTCACCTCTCTTCTTCTCCT
GTCCTCCCTCCCCTCCCTGCAGATCTACGATATGTACGGGGAAGAGGGCT
TGAAGATGGGGGGGGGAGAAGGGCCACCGCCCAATGGGCCAGGGGGAGGA
ATGGGGGGAGGGATGCCTGAGGGATTTGCGGGATTTGCACGGGCAGGAGG
AGGAGGGATGGGGACAGGAAGGGGAGGAGGGTCCTTTGGCGGATTTTCGG
ATCCCGCGGATATTTTTGCGCAGTTTTTTGGCACCTCGAGCGCCTTCGAC
GCGGACGGGTTCAGTTTCGACGATTTGGGAGGAGGAGGAGGGAGGGGGGT
AGGACGACGGGGAGGAGTCGGGGGGATGCCGGGCATGTCTCAGAGCATGG
GGGGGATGGGGGGGATACCCTTTGGTATGGGCATGGGCGGTGGTTTCGGC
GGCCCTGGTGCTTCTCCCCCTCGAAAAAGCCCGCCCCGAAAGGCCGAGCC
CGTTGAATACAATTTTAACGTCACCCTCGAGGATTTGCACACTGGGGGCA
AGAACAAAAAGATGCGCATCACCAAGAAGATCTGGGACGCGGCCTCAGGC
AAATTTCTCCACACGACCGTGGACAAGGACATTCCTATCAAGAAAGGGTG
GAAAAATGGCACTAAAATCACCTTCGAGCGCGAGGGAGACGAGCTCCCCG
GTGTCATTCCCGCCGATATTGTCTTTGTCCTTAATACGAAGCCCCATCCT
CGCTTTGAACGAGAGGGCGATGACCTGGTGTACACGGCAACGGTGCCGTT
GGAGCAGGCGTTGACAGGCGTGGAGGTAACAATTCAAACGTTAGACGGAC
GGACTTTGAAGGTGAGCGAGCCGCATGTCACACCAGGGACAGTAAAGATC
CTCCGCGGGGAAGGCATGCCGTTGCAGAAATCACCAGATCGGAAGGGAAA
TTTGAAAGTGAAGTTCAACATCGTCTTCCCGACCTTGACCGACTCTCAGA
AGCGGGAGATCCGGGCGGTATTGAAGGGAGGGAGGGGGTGAGAGGGAAGG
AGGGAGGGAGGGAGGAGGGGAGTACGGGGCGTTGGGCTGGAAGGGCAGGG
GCGAGGAGGTGGTTACCACCAAGACATAAAGAAGGAAAGACGACACCGAC
GCCAACGCTAACGGAAACAAAAAACACGTATTTGAGTATTTTGCATCAGT
GGTACATTTTACATGCATTCACTTTCTTTCCATTCTGGACCCGTGCCGTG
GTCCTTATTTTCTGCCGCGCATTCAGCCCCGCCGCCGCGAAGAAGCAGGA
GGTGGTATGATCCACACACCAGCTTCACTTCCCCCTTTCCCTTTTCCAAG
AACTCTGATGTTTGTCGTACTGCTGCTGCTGCTCCTCCGCCTCCTCCTCC
TCCCCTTCTTCCTCCTCTTCCTCCTCCTCTTCCTCCTCTTCCTCCTCCTC
CACCACCATCTCCTCCTCC

protein sequence of jgi.p|Nanoce1779_2|626393

>mRNA_10106-protein ID=mRNA_10106-protein|Name=jgi.p|Nanoce1779_2|626393|organism=Nannochloropsis oceanica|type=polypeptide|length=320bp
MYGEEGLKMGGGEGPPPNGPGGGMGGGMPEGFAGFARAGGGGMGTGRGGG
SFGGFSDPADIFAQFFGTSSAFDADGFSFDDLGGGGGRGVGRRGGVGGMP
GMSQSMGGMGGIPFGMGMGGGFGGPGASPPRKSPPRKAEPVEYNFNVTLE
DLHTGGKNKKMRITKKIWDAASGKFLHTTVDKDIPIKKGWKNGTKITFER
EGDELPGVIPADIVFVLNTKPHPRFEREGDDLVYTATVPLEQALTGVEVT
IQTLDGRTLKVSEPHVTPGTVKILRGEGMPLQKSPDRKGNLKVKFNIVFP
TLTDSQKREIRAVLKGGRG*

mRNA from alignment at scaffold_46:154957..157365+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10106 ID=mRNA_10106|Name=jgi.p|Nanoce1779_2|626393|organism=Nannochloropsis oceanica|type=mRNA|length=2409bp|location=Sequence derived from alignment at scaffold_46:154957..157365+ (Nannochloropsis oceanica)
TCTCGGATCCGGAGAAGAAGAAGGTGAGGGGAGACAGGAGGGAGGGATGA
AAGGAGGGAAGGTCGCCAACAAACACCGGAGTGAGGCTCTCATCGCAATT
TTGCTTCTTCTACATTTTGCCATCCGGGGAGCAGATGACAGCCACAGAGA
CTTGACAAGGTAAAATGTCTCTCTTTTCAGCTCACCTCTCTTCTTCTCCT
GTCCTCCCTCCCCTCCCTGCAGATCTACGATATGTACGGGGAAGAGGGCT
TGAAGATGGGGGGGGGAGAAGGGCCACCGCCCAATGGGCCAGGGGGAGGA
ATGGGGGGAGGGATGCCTGAGGGATTTGCGGGATTTGCACGGGCAGGAGG
AGGAGGGATGGGGACAGGAAGGGGAGGAGGGTCCTTTGGCGGATTTTCGG
ATCCCGCGGATATTTTTGCGCAGGTAGGGAAGGAGGGAGGGAGGGGAGGA
ATGAGGGAGGGAGGGTGGTGAATCTTCTGTAGTACTTGAGAAAGCGATTC
TCATTTTGAAAATTGTACTTCATTGAAAGCCTCTTCCTTTATGGGAGTAT
TGACCGTCATTCATCTTTCCCTCCCTCCTCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCTTTTCACCGACAGTTTTTTGGCACCTCGAGCGCCT
TCGACGCGGACGGGTTCAGTTTCGACGATTTGGGAGGAGGAGGAGGGAGG
GGGGTAGGACGACGGGGAGGAGTCGGGGGGATGCCGGGCATGTCTCAGAG
CATGGGGGGGATGGGGGGGATACCCTTTGGTGAGGGAGGGAGGGAGGGAG
GGAGGGATGGATGGAGGGAGGGAGGGAGGGAGGGATGGAGGGATGGAGGG
ATGGAGGGATGGAGGGATGGAGGGATGGAGGGATGGAGGGACGGAGGGAG
GGAGGAGAGGGAGGAAAGGACATATTCGCCATTGTACGTGGTCTATTCAC
TCGTCATACTTATCTCTCCCGCCCGCCCTCCCTTCCTCCCTCCCTTCTTC
AGGTATGGGCATGGGCGGTGGTTTCGGCGGCCCTGGTGCTTCTCCCCCTC
GAAAAAGCCCGCCCCGAAAGGCCGAGCCCGTTGAATACAATTTTAACGTC
ACCCTCGAGGATTTGCACACTGGGGGCAAGAACAAAAAGATGCGCATCAC
CAAGAAGGTAAACGCCTCATTCCCCTCCATCATCACGTTCGCAGTCCTGT
CCTCCCTTCCCTCCCTTCCCCCCTCCCTCCCTTTTCTCCTTGTCGGCCTT
CCTCCTTCCATCCTCTCCTCCCTCCCTCCTCTCCATGCTTCGCCCTCCCT
TTCCGTTCAACCACGCCGATCCCGACACCCCTCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCCAGATCTGGGACGCGGCCTCAGGCAAATTTCTCC
ACACGACCGTGGACAAGGACATTCCTATCAAGAAAGGGTGGAAAAATGGC
ACTAAAATCACCTTCGAGCGCGAGGGAGACGAGCTCCCCGGTGTCATTCC
CGCCGATATTGTCTTTGTCCTTAATACGAAGCCCCATCCTCGCTTTGAAC
GAGAGGGCGATGACCTGGTGTACACGGCAACGGTGCCGTTGGAGCAGGCG
TTGACAGGCGTGGAGGTAACAATTCAAACGTTAGACGGACGGACTTTGAA
GGTAGGTAGGTGGGTAGCGAGGGAGGGAGGGAGGGAGGGCATGGTGGAGG
GAAGAAGGTGGTGTGTCCGTTGTCTTGCGATCAACTTAATCATTCTCCTT
GTCCACTCCCTCCCTCTGCTTCTCCCTCCACCTCTTTCTCCCTCCATTTA
GGTGAGCGAGCCGCATGTCACACCAGGGACAGTAAAGATCCTCCGCGGGG
AAGGCATGCCGTTGCAGAAATCACCAGATCGGAAGGGAAATTTGAAAGTG
AAGTTCAACATCGTCTTCCCGACCTTGACCGACTCTCAGAAGCGGGAGAT
CCGGGCGGTATTGAAGGGAGGGAGGGGGTGAGAGGGAAGGAGGGAGGGAG
GGAGGAGGGGAGTACGGGGCGTTGGGCTGGAAGGGCAGGGGCGAGGAGGT
GGTTACCACCAAGACATAAAGAAGGAAAGACGACACCGACGCCAACGCTA
ACGGAAACAAAAAACACGTATTTGAGTATTTTGCATCAGTGGTACATTTT
ACATGCATTCACTTTCTTTCCATTCTGGACCCGTGCCGTGGTCCTTATTT
TCTGCCGCGCATTCAGCCCCGCCGCCGCGAAGAAGCAGGAGGTGGTATGA
TCCACACACCAGCTTCACTTCCCCCTTTCCCTTTTCCAAGAACTCTGATG
TTTGTCGTACTGCTGCTGCTGCTCCTCCGCCTCCTCCTCCTCCCCTTCTT
CCTCCTCTTCCTCCTCCTCTTCCTCCTCTTCCTCCTCCTCCACCACCATC
TCCTCCTCC

Coding sequence (CDS) from alignment at scaffold_46:154957..157365+

>mRNA_10106 ID=mRNA_10106|Name=jgi.p|Nanoce1779_2|626393|organism=Nannochloropsis oceanica|type=CDS|length=4800bp|location=Sequence derived from alignment at scaffold_46:154957..157365+ (Nannochloropsis oceanica)
ATGTACGGGGAAGAGGGCTTGAAGATGGGGGGGGGAGAAGGGCCACCGCC
CAATGGGCCAGGGGGAGGAATGGGGGGAGGGATGCCTGAGGGATTTGCGG
GATTTGCACGGGCAGGAGGAGGAGGGATGGGGACAGGAAGGGGAGGAGGG
TCCTTTGGCGGATTTTCGGATCCCGCGGATATTTTTGCGCAGTTTTTTGG
CACCTCGAGCGCCTTCGACGCGGACGGGTTCAGTTTCGACGATTTGGGAG
GAGGAGGAGGGAGGGGGGTAGGACGACGGGGAGGAGTCGGGGGGATGCCG
GGCATGTCTCAGAGCATGGGGGGGATGGGGGGGATACCCTTTGGTATGGG
CATGGGCGGTGGTTTCGGCGGCCCTGGTGCTTCTCCCCCTCGAAAAAGCC
CGCCCCGAAAGGCCGAGCCCGTTGAATACAATTTTAACGTCACCCTCGAG
GATTTGCACACTGGGGGCAAGAACAAAAAGATGCGCATCACCAAGAAGAT
CTGGGACGCGGCCTCAGGCAAATTTCTCCACACGACCGTGGACAAGGACA
TTCCTATCAAGAAAGGGTGGAAAAATGGCACTAAAATCACCTTCGAGCGC
GAGGGAGACGAGCTCCCCGGTGTCATTCCCGCCGATATTGTCTTTGTCCT
TAATACGAAGCCCCATCCTCGCTTTGAACGAGAGGGCGATGACCTGGTGT
ACACGGCAACGGTGCCGTTGGAGCAGGCGTTGACAGGCGTGGAGGTAACA
ATTCAAACGTTAGACGGACGGACTTTGAAGGTGAGCGAGCCGCATGTCAC
ACCAGGGACAGTAAAGATCCTCCGCGGGGAAGGCATGCCGTTGCAGAAAT
CACCAGATCGGAAGGGAAATTTGAAAGTGAAGTTCAACATCGTCTTCCCG
ACCTTGACCGACTCTCAGAAGCGGGAGATCCGGGCGGTATTGAAGGGAGG
GAGGGGGTGAATGTACGGGGAAGAGGGCTTGAAGATGGGGGGGGGAGAAG
GGCCACCGCCCAATGGGCCAGGGGGAGGAATGGGGGGAGGGATGCCTGAG
GGATTTGCGGGATTTGCACGGGCAGGAGGAGGAGGGATGGGGACAGGAAG
GGGAGGAGGGTCCTTTGGCGGATTTTCGGATCCCGCGGATATTTTTGCGC
AGTTTTTTGGCACCTCGAGCGCCTTCGACGCGGACGGGTTCAGTTTCGAC
GATTTGGGAGGAGGAGGAGGGAGGGGGGTAGGACGACGGGGAGGAGTCGG
GGGGATGCCGGGCATGTCTCAGAGCATGGGGGGGATGGGGGGGATACCCT
TTGGTATGGGCATGGGCGGTGGTTTCGGCGGCCCTGGTGCTTCTCCCCCT
CGAAAAAGCCCGCCCCGAAAGGCCGAGCCCGTTGAATACAATTTTAACGT
CACCCTCGAGGATTTGCACACTGGGGGCAAGAACAAAAAGATGCGCATCA
CCAAGAAGATCTGGGACGCGGCCTCAGGCAAATTTCTCCACACGACCGTG
GACAAGGACATTCCTATCAAGAAAGGGTGGAAAAATGGCACTAAAATCAC
CTTCGAGCGCGAGGGAGACGAGCTCCCCGGTGTCATTCCCGCCGATATTG
TCTTTGTCCTTAATACGAAGCCCCATCCTCGCTTTGAACGAGAGGGCGAT
GACCTGGTGTACACGGCAACGGTGCCGTTGGAGCAGGCGTTGACAGGCGT
GGAGGTAACAATTCAAACGTTAGACGGACGGACTTTGAAGGTGAGCGAGC
CGCATGTCACACCAGGGACAGTAAAGATCCTCCGCGGGGAAGGCATGCCG
TTGCAGAAATCACCAGATCGGAAGGGAAATTTGAAAGTGAAGTTCAACAT
CGTCTTCCCGACCTTGACCGACTCTCAGAAGCGGGAGATCCGGGCGGTAT
TGAAGGGAGGGAGGGGGTGAATGTACGGGGAAGAGGGCTTGAAGATGGGG
GGGGGAGAAGGGCCACCGCCCAATGGGCCAGGGGGAGGAATGGGGGGAGG
GATGCCTGAGGGATTTGCGGGATTTGCACGGGCAGGAGGAGGAGGGATGG
GGACAGGAAGGGGAGGAGGGTCCTTTGGCGGATTTTCGGATCCCGCGGAT
ATTTTTGCGCAGTTTTTTGGCACCTCGAGCGCCTTCGACGCGGACGGGTT
CAGTTTCGACGATTTGGGAGGAGGAGGAGGGAGGGGGGTAGGACGACGGG
GAGGAGTCGGGGGGATGCCGGGCATGTCTCAGAGCATGGGGGGGATGGGG
GGGATACCCTTTGGTATGGGCATGGGCGGTGGTTTCGGCGGCCCTGGTGC
TTCTCCCCCTCGAAAAAGCCCGCCCCGAAAGGCCGAGCCCGTTGAATACA
ATTTTAACGTCACCCTCGAGGATTTGCACACTGGGGGCAAGAACAAAAAG
ATGCGCATCACCAAGAAGATCTGGGACGCGGCCTCAGGCAAATTTCTCCA
CACGACCGTGGACAAGGACATTCCTATCAAGAAAGGGTGGAAAAATGGCA
CTAAAATCACCTTCGAGCGCGAGGGAGACGAGCTCCCCGGTGTCATTCCC
GCCGATATTGTCTTTGTCCTTAATACGAAGCCCCATCCTCGCTTTGAACG
AGAGGGCGATGACCTGGTGTACACGGCAACGGTGCCGTTGGAGCAGGCGT
TGACAGGCGTGGAGGTAACAATTCAAACGTTAGACGGACGGACTTTGAAG
GTGAGCGAGCCGCATGTCACACCAGGGACAGTAAAGATCCTCCGCGGGGA
AGGCATGCCGTTGCAGAAATCACCAGATCGGAAGGGAAATTTGAAAGTGA
AGTTCAACATCGTCTTCCCGACCTTGACCGACTCTCAGAAGCGGGAGATC
CGGGCGGTATTGAAGGGAGGGAGGGGGTGAATGTACGGGGAAGAGGGCTT
GAAGATGGGGGGGGGAGAAGGGCCACCGCCCAATGGGCCAGGGGGAGGAA
TGGGGGGAGGGATGCCTGAGGGATTTGCGGGATTTGCACGGGCAGGAGGA
GGAGGGATGGGGACAGGAAGGGGAGGAGGGTCCTTTGGCGGATTTTCGGA
TCCCGCGGATATTTTTGCGCAGTTTTTTGGCACCTCGAGCGCCTTCGACG
CGGACGGGTTCAGTTTCGACGATTTGGGAGGAGGAGGAGGGAGGGGGGTA
GGACGACGGGGAGGAGTCGGGGGGATGCCGGGCATGTCTCAGAGCATGGG
GGGGATGGGGGGGATACCCTTTGGTATGGGCATGGGCGGTGGTTTCGGCG
GCCCTGGTGCTTCTCCCCCTCGAAAAAGCCCGCCCCGAAAGGCCGAGCCC
GTTGAATACAATTTTAACGTCACCCTCGAGGATTTGCACACTGGGGGCAA
GAACAAAAAGATGCGCATCACCAAGAAGATCTGGGACGCGGCCTCAGGCA
AATTTCTCCACACGACCGTGGACAAGGACATTCCTATCAAGAAAGGGTGG
AAAAATGGCACTAAAATCACCTTCGAGCGCGAGGGAGACGAGCTCCCCGG
TGTCATTCCCGCCGATATTGTCTTTGTCCTTAATACGAAGCCCCATCCTC
GCTTTGAACGAGAGGGCGATGACCTGGTGTACACGGCAACGGTGCCGTTG
GAGCAGGCGTTGACAGGCGTGGAGGTAACAATTCAAACGTTAGACGGACG
GACTTTGAAGGTGAGCGAGCCGCATGTCACACCAGGGACAGTAAAGATCC
TCCGCGGGGAAGGCATGCCGTTGCAGAAATCACCAGATCGGAAGGGAAAT
TTGAAAGTGAAGTTCAACATCGTCTTCCCGACCTTGACCGACTCTCAGAA
GCGGGAGATCCGGGCGGTATTGAAGGGAGGGAGGGGGTGAATGTACGGGG
AAGAGGGCTTGAAGATGGGGGGGGGAGAAGGGCCACCGCCCAATGGGCCA
GGGGGAGGAATGGGGGGAGGGATGCCTGAGGGATTTGCGGGATTTGCACG
GGCAGGAGGAGGAGGGATGGGGACAGGAAGGGGAGGAGGGTCCTTTGGCG
GATTTTCGGATCCCGCGGATATTTTTGCGCAGTTTTTTGGCACCTCGAGC
GCCTTCGACGCGGACGGGTTCAGTTTCGACGATTTGGGAGGAGGAGGAGG
GAGGGGGGTAGGACGACGGGGAGGAGTCGGGGGGATGCCGGGCATGTCTC
AGAGCATGGGGGGGATGGGGGGGATACCCTTTGGTATGGGCATGGGCGGT
GGTTTCGGCGGCCCTGGTGCTTCTCCCCCTCGAAAAAGCCCGCCCCGAAA
GGCCGAGCCCGTTGAATACAATTTTAACGTCACCCTCGAGGATTTGCACA
CTGGGGGCAAGAACAAAAAGATGCGCATCACCAAGAAGATCTGGGACGCG
GCCTCAGGCAAATTTCTCCACACGACCGTGGACAAGGACATTCCTATCAA
GAAAGGGTGGAAAAATGGCACTAAAATCACCTTCGAGCGCGAGGGAGACG
AGCTCCCCGGTGTCATTCCCGCCGATATTGTCTTTGTCCTTAATACGAAG
CCCCATCCTCGCTTTGAACGAGAGGGCGATGACCTGGTGTACACGGCAAC
GGTGCCGTTGGAGCAGGCGTTGACAGGCGTGGAGGTAACAATTCAAACGT
TAGACGGACGGACTTTGAAGGTGAGCGAGCCGCATGTCACACCAGGGACA
GTAAAGATCCTCCGCGGGGAAGGCATGCCGTTGCAGAAATCACCAGATCG
GAAGGGAAATTTGAAAGTGAAGTTCAACATCGTCTTCCCGACCTTGACCG
ACTCTCAGAAGCGGGAGATCCGGGCGGTATTGAAGGGAGGGAGGGGGTGA

Synonyms

Publications