jgi.p|Nanoce1779_2|609743, mRNA_10105 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609743
Unique NamemRNA_10105
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length957
Alignment locationscaffold_46:153015..153971 -

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Properties
Property NameValue
TranscriptId609829
TrackFilteredModels2
ProteinId609743
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_46supercontigscaffold_46:153015..153971 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609743gene_10105Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609743mRNA_10105-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10105CDS_10105Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10105 ID=mRNA_10105|Name=jgi.p|Nanoce1779_2|609743|organism=Nannochloropsis oceanica|type=mRNA|length=957bp
AACGACAGGTGTACGCTACAGGAATATGGTGCCGCTCCATAGATACCACC
AACCACTACAAGCAAATGCGAATGGTCGAAGCCCGCCGTTCCTGCTTCGT
CTCTTGCTCTTCCTCGTCCTCGTCGTCCTAGCATTCCCACCTCTTAGCGC
GACGGCTTTCGTCCTCCCCACCTTTCCATCGCAATTTTCCTCGTCAACAC
TTCTGTCCGCCGCCGATGGTAGAGGCGACGGAAGCATCAGCAGAGCTGGC
ACCCTTCAATCCGTCGCCGCTGCTGCTGGTCTCCTTCTCCTTACCACACA
CCCAACCAATGCCGCCGTCCCCACCTTCCAAGAGTATTACGGTGGGGAGG
GCGCGCAGCCTAAGACCAATAACTATATCATGAGCACCAGAAAGCAGAAG
CAACAAGATGCGAGGGCTGAACGTGCTGCAGCTGCATCCACAGACACCGA
CGTGACTATCCCAGCGGACCCCAAGCAGCTCCTTAGCAACATTCAAGAAA
CGTTGGGCTCGCTTATCCCCATGATAAAGATCGAGGGGTGGGATGACGTA
CTAGCAGCTACGAAGAAGAAGCCTCTTAATACCCTCTTTATGCCTTATCT
CGGCTACGGCACACCTGCGGGGCTGGCAGAGGCCATAGGTGGGGACAAGC
AGGCAAGCAAGGCCTTGGAGGAAGGACGGCAAGAAGCAGGCGTGGCGTTG
CAGCAGCTGGTAGATTACGCCTTTTCGAACCGGGTGATCTTTTTCAACTC
GCTGGATAAGCAGCAAGTGTCGGCGTTGGCTTCTGGGAGGGCTCCACCTG
ATCTGAGCGAGCCCTTGGGGTTGCTTCAGGACACGGTGGCGCTCGTAGAG
GCATTGCAAAAAAGCTTGTGAAAATGAGAATGATGACGCTTGAACGAATG
ACCATGAACAAGTTTTATTGATTAAAAGAAAGGGGGAAAAGATTCGAGTA
ACGTACG
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protein sequence of jgi.p|Nanoce1779_2|609743

>mRNA_10105-protein ID=mRNA_10105-protein|Name=jgi.p|Nanoce1779_2|609743|organism=Nannochloropsis oceanica|type=polypeptide|length=282bp
MVPLHRYHQPLQANANGRSPPFLLRLLLFLVLVVLAFPPLSATAFVLPTF
PSQFSSSTLLSAADGRGDGSISRAGTLQSVAAAAGLLLLTTHPTNAAVPT
FQEYYGGEGAQPKTNNYIMSTRKQKQQDARAERAAAASTDTDVTIPADPK
QLLSNIQETLGSLIPMIKIEGWDDVLAATKKKPLNTLFMPYLGYGTPAGL
AEAIGGDKQASKALEEGRQEAGVALQQLVDYAFSNRVIFFNSLDKQQVSA
LASGRAPPDLSEPLGLLQDTVALVEALQKSL*
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mRNA from alignment at scaffold_46:153015..153971-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10105 ID=mRNA_10105|Name=jgi.p|Nanoce1779_2|609743|organism=Nannochloropsis oceanica|type=mRNA|length=957bp|location=Sequence derived from alignment at scaffold_46:153015..153971- (Nannochloropsis oceanica)
AACGACAGGTGTACGCTACAGGAATATGGTGCCGCTCCATAGATACCACC
AACCACTACAAGCAAATGCGAATGGTCGAAGCCCGCCGTTCCTGCTTCGT
CTCTTGCTCTTCCTCGTCCTCGTCGTCCTAGCATTCCCACCTCTTAGCGC
GACGGCTTTCGTCCTCCCCACCTTTCCATCGCAATTTTCCTCGTCAACAC
TTCTGTCCGCCGCCGATGGTAGAGGCGACGGAAGCATCAGCAGAGCTGGC
ACCCTTCAATCCGTCGCCGCTGCTGCTGGTCTCCTTCTCCTTACCACACA
CCCAACCAATGCCGCCGTCCCCACCTTCCAAGAGTATTACGGTGGGGAGG
GCGCGCAGCCTAAGACCAATAACTATATCATGAGCACCAGAAAGCAGAAG
CAACAAGATGCGAGGGCTGAACGTGCTGCAGCTGCATCCACAGACACCGA
CGTGACTATCCCAGCGGACCCCAAGCAGCTCCTTAGCAACATTCAAGAAA
CGTTGGGCTCGCTTATCCCCATGATAAAGATCGAGGGGTGGGATGACGTA
CTAGCAGCTACGAAGAAGAAGCCTCTTAATACCCTCTTTATGCCTTATCT
CGGCTACGGCACACCTGCGGGGCTGGCAGAGGCCATAGGTGGGGACAAGC
AGGCAAGCAAGGCCTTGGAGGAAGGACGGCAAGAAGCAGGCGTGGCGTTG
CAGCAGCTGGTAGATTACGCCTTTTCGAACCGGGTGATCTTTTTCAACTC
GCTGGATAAGCAGCAAGTGTCGGCGTTGGCTTCTGGGAGGGCTCCACCTG
ATCTGAGCGAGCCCTTGGGGTTGCTTCAGGACACGGTGGCGCTCGTAGAG
GCATTGCAAAAAAGCTTGTGAAAATGAGAATGATGACGCTTGAACGAATG
ACCATGAACAAGTTTTATTGATTAAAAGAAAGGGGGAAAAGATTCGAGTA
ACGTACG
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Coding sequence (CDS) from alignment at scaffold_46:153015..153971-

>mRNA_10105 ID=mRNA_10105|Name=jgi.p|Nanoce1779_2|609743|organism=Nannochloropsis oceanica|type=CDS|length=846bp|location=Sequence derived from alignment at scaffold_46:153015..153971- (Nannochloropsis oceanica)
ATGGTGCCGCTCCATAGATACCACCAACCACTACAAGCAAATGCGAATGG
TCGAAGCCCGCCGTTCCTGCTTCGTCTCTTGCTCTTCCTCGTCCTCGTCG
TCCTAGCATTCCCACCTCTTAGCGCGACGGCTTTCGTCCTCCCCACCTTT
CCATCGCAATTTTCCTCGTCAACACTTCTGTCCGCCGCCGATGGTAGAGG
CGACGGAAGCATCAGCAGAGCTGGCACCCTTCAATCCGTCGCCGCTGCTG
CTGGTCTCCTTCTCCTTACCACACACCCAACCAATGCCGCCGTCCCCACC
TTCCAAGAGTATTACGGTGGGGAGGGCGCGCAGCCTAAGACCAATAACTA
TATCATGAGCACCAGAAAGCAGAAGCAACAAGATGCGAGGGCTGAACGTG
CTGCAGCTGCATCCACAGACACCGACGTGACTATCCCAGCGGACCCCAAG
CAGCTCCTTAGCAACATTCAAGAAACGTTGGGCTCGCTTATCCCCATGAT
AAAGATCGAGGGGTGGGATGACGTACTAGCAGCTACGAAGAAGAAGCCTC
TTAATACCCTCTTTATGCCTTATCTCGGCTACGGCACACCTGCGGGGCTG
GCAGAGGCCATAGGTGGGGACAAGCAGGCAAGCAAGGCCTTGGAGGAAGG
ACGGCAAGAAGCAGGCGTGGCGTTGCAGCAGCTGGTAGATTACGCCTTTT
CGAACCGGGTGATCTTTTTCAACTCGCTGGATAAGCAGCAAGTGTCGGCG
TTGGCTTCTGGGAGGGCTCCACCTGATCTGAGCGAGCCCTTGGGGTTGCT
TCAGGACACGGTGGCGCTCGTAGAGGCATTGCAAAAAAGCTTGTGA
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Synonyms
Publications