jgi.p|Nanoce1779_2|318165, mRNA_10102 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|318165
Unique NamemRNA_10102
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length666
Alignment locationscaffold_46:143405..144265 +

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Properties
Property NameValue
TranscriptId318251
TrackFilteredModels2
ProteinId318165
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_46supercontigscaffold_46:143405..144265 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|318165gene_10102Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|318165mRNA_10102-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10102CDS_10102Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10102 ID=mRNA_10102|Name=jgi.p|Nanoce1779_2|318165|organism=Nannochloropsis oceanica|type=mRNA|length=666bp
CGTGCACTTCGTTCGTGCTGGTACACAGATCGGTATACTTTCTTGTTGTC
TCCTGATCTTATTTTTTGTTTCTTGCTCCTTTGCAGCAGTCTTACATAAA
AGGGATCAACATATCTGCCCACTCAGACGTCCATGGAACAAAGTTGCCCA
ACCTCCCAGATGGTGCAAATGCTCCTTTCATTGCTTCTTTCCCATGTCGC
GACATGCATTCCACTCCCTTCCTCTGCCCGCAAGATCTATGCTGTACACC
CTGGTCCCTCTGCGACCTGTCCCGCTAATTCATACATCCCAACACATTAC
CCACTACCAGCAACACATAGCACATTTGTTGCCAGCATCCCCTCTGCGCC
AACAATGTCCAAGACCCCCGCGGTGAGCAACAAGTCCATCGGCAAGAGCA
TCCATGCTCCGGGCGACCACACCCATGTCTCCGACACCTTTTACGACCAC
GAAGGCCGTCTGGCCAAGAAGTCCAACCGTATGGGTAACCTGGAGAACGA
GGACCACGACCGCGCCCTGGAGCGGTAAGTGAACAAGGCCTCCATTGCTT
TGACACTTCGCTCCCAAGGCTCCTTGGGACGTGGAGAGGGGGCCGCCCCC
GGCTTGGACGGCGTCTTCTCCAAGCCCGAAGCTGCTCCCATCCACATCGA
CACGGACGAGAATGAC
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protein sequence of jgi.p|Nanoce1779_2|318165

>mRNA_10102-protein ID=mRNA_10102-protein|Name=jgi.p|Nanoce1779_2|318165|organism=Nannochloropsis oceanica|type=polypeptide|length=132bp
MEQSCPTSQMVQMLLSLLLSHVATCIPLPSSARKIYAVHPGPSATCPANS
YIPTHYPLPATHSTFVASIPSAPTMSKTPAVSNKSIGKSIHAPGDHTHVS
DTFYDHEGRLAKKSNRMGNLENEDHDRALER*
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mRNA from alignment at scaffold_46:143405..144265+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10102 ID=mRNA_10102|Name=jgi.p|Nanoce1779_2|318165|organism=Nannochloropsis oceanica|type=mRNA|length=861bp|location=Sequence derived from alignment at scaffold_46:143405..144265+ (Nannochloropsis oceanica)
CGTGCACTTCGTTCGTGCTGGTACACAGATCGGTATACTTTCTTGTTGTC
TCCTGATCTTATTTTTTGTTTCTTGCTCCTTTGCAGCAGTCTTACATAAA
AGGGATCAACATATCTGCCCACTCAGACGTCCATGGAACAAAGTTGCCCA
ACCTCCCAGATGGTGCAAATGCTCCTTTCATTGCTTCTTTCCCATGTCGC
GACATGCATTCCACTCCCTTCCTCTGCCCGCAAGATCTATGCTGTACACC
CTGGTCCCTCTGCGACCTGTCCCGCTAATTCATACATCCCAACACATTAC
CCACTACCAGCAACACATAGCACATTTGTTGCCAGCATCCCCTCTGCGCC
AACAATGTCCAAGACCCCCGCGGTGAGCAACAAGTCCATCGGCAAGAGCA
TCCATGCTCCGGGCGACCACACCCATGTCTCCGACACCTTTTACGACCAC
GAAGGCCGTCTGGCCAAGAAGTCCAACCGTATGGGTAACCTGGAGAACGA
GGACCACGACCGCGCCCTGGAGCGGTAAGTCACTGTTGGGTTGGTGGTAG
ATAGGAGCGACTGTGTTCAGAAAGTGAGCCAGGATCGCGTATCTTTTTGC
AAAGCCTACACCGAAGAGTCCTGTTCACCCCGCACTCTCACGGTACACCA
TCGGCGCTCTCCGTAATCCCCTCTCCTGACTCCCTTTACCTCCATCCCTT
CCCCCTCCAGCACCATGCGGGAGGTGAACAAGGCCTCCATTGCTTTGACA
CTTCGCTCCCAAGGCTCCTTGGGACGTGGAGAGGGGGCCGCCCCCGGCTT
GGACGGCGTCTTCTCCAAGCCCGAAGCTGCTCCCATCCACATCGACACGG
ACGAGAATGAC
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Coding sequence (CDS) from alignment at scaffold_46:143405..144265+

>mRNA_10102 ID=mRNA_10102|Name=jgi.p|Nanoce1779_2|318165|organism=Nannochloropsis oceanica|type=CDS|length=396bp|location=Sequence derived from alignment at scaffold_46:143405..144265+ (Nannochloropsis oceanica)
ATGGAACAAAGTTGCCCAACCTCCCAGATGGTGCAAATGCTCCTTTCATT
GCTTCTTTCCCATGTCGCGACATGCATTCCACTCCCTTCCTCTGCCCGCA
AGATCTATGCTGTACACCCTGGTCCCTCTGCGACCTGTCCCGCTAATTCA
TACATCCCAACACATTACCCACTACCAGCAACACATAGCACATTTGTTGC
CAGCATCCCCTCTGCGCCAACAATGTCCAAGACCCCCGCGGTGAGCAACA
AGTCCATCGGCAAGAGCATCCATGCTCCGGGCGACCACACCCATGTCTCC
GACACCTTTTACGACCACGAAGGCCGTCTGGCCAAGAAGTCCAACCGTAT
GGGTAACCTGGAGAACGAGGACCACGACCGCGCCCTGGAGCGGTAA
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Synonyms
Publications