jgi.p|Nanoce1779_2|609702, mRNA_10098 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609702
Unique NamemRNA_10098
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1232
Alignment locationscaffold_46:130067..131549 -

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Properties
Property NameValue
TranscriptId609788
TrackFilteredModels2
ProteinId609702
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_46supercontigscaffold_46:130067..131549 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609702gene_10098Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609702mRNA_10098-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10098CDS_10098Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10098 ID=mRNA_10098|Name=jgi.p|Nanoce1779_2|609702|organism=Nannochloropsis oceanica|type=mRNA|length=1232bp
ACAGACACGGCCTAGATGATGGAGCCCCTCGCTACGCCGTCAACCTCCGC
CTCCTCGTCTTTCGGCTCCTCCTCTTCCTCTTCTCGGCCTGCCCTCCTCT
TGTCTCTCTTCAGCCTCACCGTCGCCTCTTCCTCAAGCACCCAACAATAT
GTCTACTCAGCCGCCGTTCTGCCCTCTCAATCACCGTTACCAGAAGACAA
GGCCACTCCTCACTCCCCCATGCCCCTCCTCGGCCGCCACCAGTGCCACC
ACCTCTCCGCACGCAGCCACGTTCGGAAAGGGTCACCCTCCTCTTCCTCT
TCCTCCTCCGCCTCCCTCTGCTCCATGCTAACGCGTCGCGGTGGCAGCAG
CACCAGCACTATCCACCATCCCTCCCCCTCATCCCCTCTTCGGAATCGCA
CCGCAGAATGGGAGGAGGACGCGGCGTGGCTTACCAATCAAGTTTTGATC
TATCAAGCACACCTTGCCTTGTCCTCGGAGGCGCTGGGCAAGCGGCACGC
AGTGGTAGGGCCCACACCCTTCGACTACGGATTTAAGCATGAGGAGAAGT
ACAGGCCCCCTTTGGAGATCGCGCAAGCCTCTCCCTCCCAGCCTTACGAC
TGCCGGATCCACGGCGAGGTCGAAGTGGGGGCCAAGCTTGTCGCCCCCTG
CTTGTGTCGAGGGACTGGAAAGTGGATGTGGTTCGCCGATATGAACAGAC
GGCGTCGGCGGGACCCAGTATCCAGCCGGGTGTGTGGGACTTGCCACGCA
CGCATCGACTATCAGGCGTATCAACAATTTGGTTCATCCCTAACGAAGCT
CGTTTCCTGGCCCCTTGATCACGCACCGGCCTTTCGCGGTGTGCTCTTGG
CCGTAATCCTCTCTTCCTCGTTCTTCCTCTTCCTTGACCCAGTCTCAGTC
CTGGTTATTCGTTTGCTGACATCCTCATTGTTCTGGCGACAACACTCCCT
ATGGGCACGCGTAATATATGGCCCTTTGCCTCTGAAGATTGTGATGTACA
AGTATGTTGGGCAACTGCTTTGGTCCTACTTTTTGAAGATGGAGGATGCG
GTGAGAGAGACCCTGGCGGAAGCGGAAAGTGTGTTATTGGAGAGAGCGCT
GCCTGTCACTGTTGGGGAGGAGTACTCAGCAGGAGAAGGCGAAGGGGAAG
CAGGAGATGGAGCAGAGGAAGAGGATTAGTTTTGCTCAGTAAGGGAGTGG
GAAAAAAAGAAATATTCGTATAAACTTTTCAA
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protein sequence of jgi.p|Nanoce1779_2|609702

>mRNA_10098-protein ID=mRNA_10098-protein|Name=jgi.p|Nanoce1779_2|609702|organism=Nannochloropsis oceanica|type=polypeptide|length=388bp
MMEPLATPSTSASSSFGSSSSSSRPALLLSLFSLTVASSSSTQQYVYSAA
VLPSQSPLPEDKATPHSPMPLLGRHQCHHLSARSHVRKGSPSSSSSSSAS
LCSMLTRRGGSSTSTIHHPSPSSPLRNRTAEWEEDAAWLTNQVLIYQAHL
ALSSEALGKRHAVVGPTPFDYGFKHEEKYRPPLEIAQASPSQPYDCRIHG
EVEVGAKLVAPCLCRGTGKWMWFADMNRRRRRDPVSSRVCGTCHARIDYQ
AYQQFGSSLTKLVSWPLDHAPAFRGVLLAVILSSSFFLFLDPVSVLVIRL
LTSSLFWRQHSLWARVIYGPLPLKIVMYKYVGQLLWSYFLKMEDAVRETL
AEAESVLLERALPVTVGEEYSAGEGEGEAGDGAEEED*
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mRNA from alignment at scaffold_46:130067..131549-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10098 ID=mRNA_10098|Name=jgi.p|Nanoce1779_2|609702|organism=Nannochloropsis oceanica|type=mRNA|length=1483bp|location=Sequence derived from alignment at scaffold_46:130067..131549- (Nannochloropsis oceanica)
ACAGACACGGCCTAGATGATGGAGCCCCTCGCTACGCCGTCAACCTCCGC
CTCCTCGTCTTTCGGCTCCTCCTCTTCCTCTTCTCGGCCTGCCCTCCTCT
TGTCTCTCTTCAGCCTCACCGTCGCCTCTTCCTCAAGCACCCAACAATAT
GTCTACTCAGCCGCCGTTCTGCCCTCTCAATCACCGTTACCAGAAGACAA
GGCCACTCCTCACTCCCCCATGCCCCTCCTCGGCCGCCACCAGTGCCACC
ACCTCTCCGCACGCAGCCACGTTCGGAAAGGGTCACCCTCCTCTTCCTCT
TCCTCCTCCGCCTCCCTCTGCTCCATGCTAACGCGTCGCGGTGGCAGCAG
CACCAGCACTATCCACCATCCCTCCCCCTCATCCCCTCTTCGGAATCGCA
CCGCAGAATGGGAGGAGGACGCGGCGTGGCTTACCAATCAAGTTTTGATC
TATCAAGCACACCTTGCCTTGTCCTCGGAGGCGCTGGGCAAGCGGCACGC
AGTGGTAGGGCCCACACCCTTCGACTACGGATTTAAGCATGAGGAGAAGT
ACAGGTAGGTGTGTGAATGGCTGTCGTGGTGGTCGTCGAAAGGGGTTGAT
ATTTTAGCTGCTTGTCATGGTTATGAGGGTTGAGGGAGTGGGCTGGTCGT
ATGTAGTGCTTGCGAGCCTGTCATTCCCTTATTCTAATGTTTCATGCCAT
TGGGAACATTTTTCGCTTGGAACGCATTAAATAAATCTCCTTTTGCTCTA
ACATTTTTCTCCCTCCTTTACTTTTTCCCTCCCTTTCCTCCCTTCCCTCC
CCCAGGCCCCCTTTGGAGATCGCGCAAGCCTCTCCCTCCCAGCCTTACGA
CTGCCGGATCCACGGCGAGGTCGAAGTGGGGGCCAAGCTTGTCGCCCCCT
GCTTGTGTCGAGGGACTGGAAAGTGGATGTGGTTCGCCGATATGAACAGA
CGGCGTCGGCGGGACCCAGTATCCAGCCGGGTGTGTGGGACTTGCCACGC
ACGCATCGACTATCAGGCGTATCAACAATTTGGTTCATCCCTAACGAAGC
TCGTTTCCTGGCCCCTTGATCACGCACCGGCCTTTCGCGGTGTGCTCTTG
GCCGTAATCCTCTCTTCCTCGTTCTTCCTCTTCCTTGACCCAGTCTCAGT
CCTGGTTATTCGTTTGCTGACATCCTCATTGTTCTGGCGACAACACTCCC
TATGGGCACGCGTAATATATGGCCCTTTGCCTCTGAAGATTGTGATGTAC
AAGTATGTTGGGCAACTGCTTTGGTCCTACTTTTTGAAGATGGAGGATGC
GGTGAGAGAGACCCTGGCGGAAGCGGAAAGTGTGTTATTGGAGAGAGCGC
TGCCTGTCACTGTTGGGGAGGAGTACTCAGCAGGAGAAGGCGAAGGGGAA
GCAGGAGATGGAGCAGAGGAAGAGGATTAGTTTTGCTCAGTAAGGGAGTG
GGAAAAAAAGAAATATTCGTATAAACTTTTCAA
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Coding sequence (CDS) from alignment at scaffold_46:130067..131549-

>mRNA_10098 ID=mRNA_10098|Name=jgi.p|Nanoce1779_2|609702|organism=Nannochloropsis oceanica|type=CDS|length=2328bp|location=Sequence derived from alignment at scaffold_46:130067..131549- (Nannochloropsis oceanica)
GCCCCCTTTGGAGATCGCGCAAGCCTCTCCCTCCCAGCCTTACGACTGCC
GGATCCACGGCGAGGTCGAAGTGGGGGCCAAGCTTGTCGCCCCCTGCTTG
TGTCGAGGGACTGGAAAGTGGATGTGGTTCGCCGATATGAACAGACGGCG
TCGGCGGGACCCAGTATCCAGCCGGGTGTGTGGGACTTGCCACGCACGCA
TCGACTATCAGGCGTATCAACAATTTGGTTCATCCCTAACGAAGCTCGTT
TCCTGGCCCCTTGATCACGCACCGGCCTTTCGCGGTGTGCTCTTGGCCGT
AATCCTCTCTTCCTCGTTCTTCCTCTTCCTTGACCCAGTCTCAGTCCTGG
TTATTCGTTTGCTGACATCCTCATTGTTCTGGCGACAACACTCCCTATGG
GCACGCGTAATATATGGCCCTTTGCCTCTGAAGATTGTGATGTACAAGTA
TGTTGGGCAACTGCTTTGGTCCTACTTTTTGAAGATGGAGGATGCGGTGA
GAGAGACCCTGGCGGAAGCGGAAAGTGTGTTATTGGAGAGAGCGCTGCCT
GTCACTGTTGGGGAGGAGTACTCAGCAGGAGAAGGCGAAGGGGAAGCAGG
AGATGGAGCAGAGGAAGAGGATTAGATGATGGAGCCCCTCGCTACGCCGT
CAACCTCCGCCTCCTCGTCTTTCGGCTCCTCCTCTTCCTCTTCTCGGCCT
GCCCTCCTCTTGTCTCTCTTCAGCCTCACCGTCGCCTCTTCCTCAAGCAC
CCAACAATATGTCTACTCAGCCGCCGTTCTGCCCTCTCAATCACCGTTAC
CAGAAGACAAGGCCACTCCTCACTCCCCCATGCCCCTCCTCGGCCGCCAC
CAGTGCCACCACCTCTCCGCACGCAGCCACGTTCGGAAAGGGTCACCCTC
CTCTTCCTCTTCCTCCTCCGCCTCCCTCTGCTCCATGCTAACGCGTCGCG
GTGGCAGCAGCACCAGCACTATCCACCATCCCTCCCCCTCATCCCCTCTT
CGGAATCGCACCGCAGAATGGGAGGAGGACGCGGCGTGGCTTACCAATCA
AGTTTTGATCTATCAAGCACACCTTGCCTTGTCCTCGGAGGCGCTGGGCA
AGCGGCACGCAGTGGTAGGGCCCACACCCTTCGACTACGGATTTAAGCAT
GAGGAGAAGTACAGGCCCCCTTTGGAGATCGCGCAAGCCTCTCCCTCCCA
GCCTTACGACTGCCGGATCCACGGCGAGGTCGAAGTGGGGGCCAAGCTTG
TCGCCCCCTGCTTGTGTCGAGGGACTGGAAAGTGGATGTGGTTCGCCGAT
ATGAACAGACGGCGTCGGCGGGACCCAGTATCCAGCCGGGTGTGTGGGAC
TTGCCACGCACGCATCGACTATCAGGCGTATCAACAATTTGGTTCATCCC
TAACGAAGCTCGTTTCCTGGCCCCTTGATCACGCACCGGCCTTTCGCGGT
GTGCTCTTGGCCGTAATCCTCTCTTCCTCGTTCTTCCTCTTCCTTGACCC
AGTCTCAGTCCTGGTTATTCGTTTGCTGACATCCTCATTGTTCTGGCGAC
AACACTCCCTATGGGCACGCGTAATATATGGCCCTTTGCCTCTGAAGATT
GTGATGTACAAGTATGTTGGGCAACTGCTTTGGTCCTACTTTTTGAAGAT
GGAGGATGCGGTGAGAGAGACCCTGGCGGAAGCGGAAAGTGTGTTATTGG
AGAGAGCGCTGCCTGTCACTGTTGGGGAGGAGTACTCAGCAGGAGAAGGC
GAAGGGGAAGCAGGAGATGGAGCAGAGGAAGAGGATTAGATGATGGAGCC
CCTCGCTACGCCGTCAACCTCCGCCTCCTCGTCTTTCGGCTCCTCCTCTT
CCTCTTCTCGGCCTGCCCTCCTCTTGTCTCTCTTCAGCCTCACCGTCGCC
TCTTCCTCAAGCACCCAACAATATGTCTACTCAGCCGCCGTTCTGCCCTC
TCAATCACCGTTACCAGAAGACAAGGCCACTCCTCACTCCCCCATGCCCC
TCCTCGGCCGCCACCAGTGCCACCACCTCTCCGCACGCAGCCACGTTCGG
AAAGGGTCACCCTCCTCTTCCTCTTCCTCCTCCGCCTCCCTCTGCTCCAT
GCTAACGCGTCGCGGTGGCAGCAGCACCAGCACTATCCACCATCCCTCCC
CCTCATCCCCTCTTCGGAATCGCACCGCAGAATGGGAGGAGGACGCGGCG
TGGCTTACCAATCAAGTTTTGATCTATCAAGCACACCTTGCCTTGTCCTC
GGAGGCGCTGGGCAAGCGGCACGCAGTGGTAGGGCCCACACCCTTCGACT
ACGGATTTAAGCATGAGGAGAAGTACAG
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Synonyms
Publications