jgi.p|Nanoce1779_2|317655, mRNA_10096 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|317655
Unique NamemRNA_10096
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1574
Alignment locationscaffold_46:121863..123436 -

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Properties
Property NameValue
TranscriptId317741
TrackFilteredModels2
ProteinId317655
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_46supercontigscaffold_46:121863..123436 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|317655gene_10096Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|317655mRNA_10096-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10096CDS_10096Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10096 ID=mRNA_10096|Name=jgi.p|Nanoce1779_2|317655|organism=Nannochloropsis oceanica|type=mRNA|length=1574bp
GAATGCTTACTTCCCCTGATCTCCTCGTCCTTCCCTTTTCCCCTCCTCCC
AGGTTGGCGTAATCACCTTCTGGCTGGTGGCCGCCGCCATCGGGACCAAG
AGCGAGGATATGGTGGAAATCTGCGGATGGATGTTTGTCGTACTCAACAT
CATCGTGCTGGCCTTTGTCTTCCGCAATCTTGTCTTGGGCATCATGAATG
TCAATAAGGAGCCGGTGCGTGCCCTCCCTCCTTCCCCCCCCTGCTCCCTC
GCCCCCTCCCTCCTCCCACCCCTCCCTCTCTCCTCTGTCACACTCAAATG
CTTCCGCTCGACTTCCAACATCTCCCCTTTCCTCCCTCCCTTCTTCCCTC
CCTCCCTCCCTCCATCCCTCCCGCCCTTCCTCCCCAGGACACCGAGGACG
TGGTTTTCATCCGCGATGGCATGCGCCTCGATCCCGCCGTGGAAAGGGAA
AAGTCGGTTGATATTTTTACTCAAGGTGGCTGGCAAGGCTTCCTTGCCAA
CTTCTTCCCCTTCACCTCCGCCTTCCCCTCCTCTCCCTCTTCGCCTGCCT
CTCTTCCGACCCACGCCCGCGCGGATGGAAAGGAGGGAGGGACGTCGGTT
TCGTTCAGCTCCTTGTCTTCAGTAAGAGCGTATCTGGGCTCTACCAGCAG
CAAGAGGGGACTACAGGTGGAGGGGATGGAGGGATGGAAGGATACAGGAA
AAGAGGGAGGAATGGAGGGAGAGGAGAGGACGAAGAGCGGATCATTTGCG
GCGGCTGGAGTGGAGAAGGATGATGTGGGTGTAGCGATTTGTATCGGGGA
GTCGCCACGGCAGGGCCCCAAGGCTGGGAAAGAGAGATGGAAGGAGGGAA
GGGTCGCGATAGCTAGAGCGAAGGAGGGAGTAAGAGGCTTCTTCCAGGGA
CTCATGAGAGCAACAACGAAGAAGGAAGAGAGGACAGTTATGTCCCCCTC
GGGGGGAGGGGGGCCAGTGAGGAAGAAAACGACGGAGAAGATGGAAGAGA
GGAGGAAGAAGAAGAAGGAAGGGCAGGTGGCAGGTGAGGCGGTGGAGGGG
GGGGAGAAGAAGAAGAAGAAGAAGAAGAGGCGGTCAAGCGAGGAGAAGAA
GGAGGAAGAGGAGGAGGTGGCGGTGGTGGTGATGGAGGACGAGGAGGAAA
CGGCGGCGAAGAAAAAGAAGAAGAACAAGAAGAGCAAGGACACACCCAGG
AGTAGCAGCAGCACAGGAAAGAAAACGAAGGAGGGGAAGACGGGGAAGAA
GAAGAAGAGCAAAAAGTCTTCCGCTGACTTGAGCAACAGTACGACCATTG
ACGCCACTGCTGAGAGTGCAGCTCCTCCTCCTCAATCTGCTCCATTAGCT
GCAGTGGTAGAACAGCCCGTCTCTCGTCCTAAGGAGGAAAAGGAGGGGAA
GGACAAGGACCAGGGGGAGCCCTGAAGGGAGGGAGGGAGGAAGGGAGGGA
GGGAGTGAAGAAGGGGAAAGAGATTCAATTGGCAATTTAGAGTGTGGCGA
GGTAGGAGAGAGGGGGCGCAAGTGGGGAATAAAAGGCTAGGTTGGTGCCT
TCTTCAATCTGTCCTTGCGCTTCT
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protein sequence of jgi.p|Nanoce1779_2|317655

>mRNA_10096-protein ID=mRNA_10096-protein|Name=jgi.p|Nanoce1779_2|317655|organism=Nannochloropsis oceanica|type=polypeptide|length=376bp
MLPLDFQHLPFPPSLLPSLPPSIPPALPPQDTEDVVFIRDGMRLDPAVER
EKSVDIFTQGGWQGFLANFFPFTSAFPSSPSSPASLPTHARADGKEGGTS
VSFSSLSSVRAYLGSTSSKRGLQVEGMEGWKDTGKEGGMEGEERTKSGSF
AAAGVEKDDVGVAICIGESPRQGPKAGKERWKEGRVAIARAKEGVRGFFQ
GLMRATTKKEERTVMSPSGGGGPVRKKTTEKMEERRKKKKEGQVAGEAVE
GGEKKKKKKKRRSSEEKKEEEEEVAVVVMEDEEETAAKKKKKNKKSKDTP
RSSSSTGKKTKEGKTGKKKKSKKSSADLSNSTTIDATAESAAPPPQSAPL
AAVVEQPVSRPKEEKEGKDKDQGEP*
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mRNA from alignment at scaffold_46:121863..123436-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10096 ID=mRNA_10096|Name=jgi.p|Nanoce1779_2|317655|organism=Nannochloropsis oceanica|type=mRNA|length=1574bp|location=Sequence derived from alignment at scaffold_46:121863..123436- (Nannochloropsis oceanica)
GAATGCTTACTTCCCCTGATCTCCTCGTCCTTCCCTTTTCCCCTCCTCCC
AGGTTGGCGTAATCACCTTCTGGCTGGTGGCCGCCGCCATCGGGACCAAG
AGCGAGGATATGGTGGAAATCTGCGGATGGATGTTTGTCGTACTCAACAT
CATCGTGCTGGCCTTTGTCTTCCGCAATCTTGTCTTGGGCATCATGAATG
TCAATAAGGAGCCGGTGCGTGCCCTCCCTCCTTCCCCCCCCTGCTCCCTC
GCCCCCTCCCTCCTCCCACCCCTCCCTCTCTCCTCTGTCACACTCAAATG
CTTCCGCTCGACTTCCAACATCTCCCCTTTCCTCCCTCCCTTCTTCCCTC
CCTCCCTCCCTCCATCCCTCCCGCCCTTCCTCCCCAGGACACCGAGGACG
TGGTTTTCATCCGCGATGGCATGCGCCTCGATCCCGCCGTGGAAAGGGAA
AAGTCGGTTGATATTTTTACTCAAGGTGGCTGGCAAGGCTTCCTTGCCAA
CTTCTTCCCCTTCACCTCCGCCTTCCCCTCCTCTCCCTCTTCGCCTGCCT
CTCTTCCGACCCACGCCCGCGCGGATGGAAAGGAGGGAGGGACGTCGGTT
TCGTTCAGCTCCTTGTCTTCAGTAAGAGCGTATCTGGGCTCTACCAGCAG
CAAGAGGGGACTACAGGTGGAGGGGATGGAGGGATGGAAGGATACAGGAA
AAGAGGGAGGAATGGAGGGAGAGGAGAGGACGAAGAGCGGATCATTTGCG
GCGGCTGGAGTGGAGAAGGATGATGTGGGTGTAGCGATTTGTATCGGGGA
GTCGCCACGGCAGGGCCCCAAGGCTGGGAAAGAGAGATGGAAGGAGGGAA
GGGTCGCGATAGCTAGAGCGAAGGAGGGAGTAAGAGGCTTCTTCCAGGGA
CTCATGAGAGCAACAACGAAGAAGGAAGAGAGGACAGTTATGTCCCCCTC
GGGGGGAGGGGGGCCAGTGAGGAAGAAAACGACGGAGAAGATGGAAGAGA
GGAGGAAGAAGAAGAAGGAAGGGCAGGTGGCAGGTGAGGCGGTGGAGGGG
GGGGAGAAGAAGAAGAAGAAGAAGAAGAGGCGGTCAAGCGAGGAGAAGAA
GGAGGAAGAGGAGGAGGTGGCGGTGGTGGTGATGGAGGACGAGGAGGAAA
CGGCGGCGAAGAAAAAGAAGAAGAACAAGAAGAGCAAGGACACACCCAGG
AGTAGCAGCAGCACAGGAAAGAAAACGAAGGAGGGGAAGACGGGGAAGAA
GAAGAAGAGCAAAAAGTCTTCCGCTGACTTGAGCAACAGTACGACCATTG
ACGCCACTGCTGAGAGTGCAGCTCCTCCTCCTCAATCTGCTCCATTAGCT
GCAGTGGTAGAACAGCCCGTCTCTCGTCCTAAGGAGGAAAAGGAGGGGAA
GGACAAGGACCAGGGGGAGCCCTGAAGGGAGGGAGGGAGGAAGGGAGGGA
GGGAGTGAAGAAGGGGAAAGAGATTCAATTGGCAATTTAGAGTGTGGCGA
GGTAGGAGAGAGGGGGCGCAAGTGGGGAATAAAAGGCTAGGTTGGTGCCT
TCTTCAATCTGTCCTTGCGCTTCT
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Coding sequence (CDS) from alignment at scaffold_46:121863..123436-

>mRNA_10096 ID=mRNA_10096|Name=jgi.p|Nanoce1779_2|317655|organism=Nannochloropsis oceanica|type=CDS|length=1128bp|location=Sequence derived from alignment at scaffold_46:121863..123436- (Nannochloropsis oceanica)
ATGCTTCCGCTCGACTTCCAACATCTCCCCTTTCCTCCCTCCCTTCTTCC
CTCCCTCCCTCCCTCCATCCCTCCCGCCCTTCCTCCCCAGGACACCGAGG
ACGTGGTTTTCATCCGCGATGGCATGCGCCTCGATCCCGCCGTGGAAAGG
GAAAAGTCGGTTGATATTTTTACTCAAGGTGGCTGGCAAGGCTTCCTTGC
CAACTTCTTCCCCTTCACCTCCGCCTTCCCCTCCTCTCCCTCTTCGCCTG
CCTCTCTTCCGACCCACGCCCGCGCGGATGGAAAGGAGGGAGGGACGTCG
GTTTCGTTCAGCTCCTTGTCTTCAGTAAGAGCGTATCTGGGCTCTACCAG
CAGCAAGAGGGGACTACAGGTGGAGGGGATGGAGGGATGGAAGGATACAG
GAAAAGAGGGAGGAATGGAGGGAGAGGAGAGGACGAAGAGCGGATCATTT
GCGGCGGCTGGAGTGGAGAAGGATGATGTGGGTGTAGCGATTTGTATCGG
GGAGTCGCCACGGCAGGGCCCCAAGGCTGGGAAAGAGAGATGGAAGGAGG
GAAGGGTCGCGATAGCTAGAGCGAAGGAGGGAGTAAGAGGCTTCTTCCAG
GGACTCATGAGAGCAACAACGAAGAAGGAAGAGAGGACAGTTATGTCCCC
CTCGGGGGGAGGGGGGCCAGTGAGGAAGAAAACGACGGAGAAGATGGAAG
AGAGGAGGAAGAAGAAGAAGGAAGGGCAGGTGGCAGGTGAGGCGGTGGAG
GGGGGGGAGAAGAAGAAGAAGAAGAAGAAGAGGCGGTCAAGCGAGGAGAA
GAAGGAGGAAGAGGAGGAGGTGGCGGTGGTGGTGATGGAGGACGAGGAGG
AAACGGCGGCGAAGAAAAAGAAGAAGAACAAGAAGAGCAAGGACACACCC
AGGAGTAGCAGCAGCACAGGAAAGAAAACGAAGGAGGGGAAGACGGGGAA
GAAGAAGAAGAGCAAAAAGTCTTCCGCTGACTTGAGCAACAGTACGACCA
TTGACGCCACTGCTGAGAGTGCAGCTCCTCCTCCTCAATCTGCTCCATTA
GCTGCAGTGGTAGAACAGCCCGTCTCTCGTCCTAAGGAGGAAAAGGAGGG
GAAGGACAAGGACCAGGGGGAGCCCTGA
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Synonyms
Publications