jgi.p|Nanoce1779_2|609689, mRNA_10094 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609689
Unique NamemRNA_10094
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length828
Alignment locationscaffold_46:116148..116975 -

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Properties
Property NameValue
TranscriptId609775
TrackFilteredModels2
ProteinId609689
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_46supercontigscaffold_46:116148..116975 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609689gene_10094Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609689mRNA_10094-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10094CDS_10094Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10094 ID=mRNA_10094|Name=jgi.p|Nanoce1779_2|609689|organism=Nannochloropsis oceanica|type=mRNA|length=828bp
CCCACGGTTCCGGACCTCTTCCTCTCTCCCCCTCCACCACCACCAGCTCC
ATGCCTCCCGCGGTGTCTACGGGCTTAAGCCTCAGAATGGAGAGGAGGTG
CTTCAGTGCAGTCCCTGCATGTCTCGAAGCCCAGTCATTCATCTCTGTCC
CCATGTCCTCCTGCTCATGGTGGCAGGCAAGCAGCGCCCTCTGAGTCTCA
GGAAGGAGAAAAGCCGCTTGCAAGGAAGCAGGGGAAGAGGCAGGGGGGAA
GGAAGCGAAGCATGGCCGAAGGTCCAGCAGGACACGACGAAGAAGCGGGA
TATAGATATAGGTGGCTTTAGGCGCTTGATTGTGTATGAAGGAATTGATC
AGCCAATTCTGGAGGGGGTGAGAGAGATAGGGCAGGTCATGGAAGAGGCG
GAGGAGCTCGGCGTGTTGCTTTTCCCCCTCACTCATCTTCGTGGACCGCC
ACTGCTGCCGCTGATGCTGCTGATGCGGCTGATGCTGTAGGTATGAAAGT
TGATGTTGGTGCTGTAGTTGTGCATAGTAGTACTGCTGCTGCTGCTGTTG
ATGTTGTTGTTGTTGTTGTTGTTGTTGTTCGTGATGGTGGTAAAAGAGAG
GCTGCTGTAGATACGATAGTTGATGCTGGTGCTCAAGTTGTGGATAGCAT
TGCTGCTGCACCTGCTGTAGCGGTCGTTCCGAAACCTGATGCTGGCAATT
GATTCGATGCTGGTGGCGCTGGTGGTGGTATGGATGGAAGTTGTCCTCCT
TTTCCTCCTCCTCCTCCCCATCCCCTTCTTCTTGTTGCATTTCCCTCGCT
TCCTCCGTGTTCATCTCGCCCGTCTTCC
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protein sequence of jgi.p|Nanoce1779_2|609689

>mRNA_10094-protein ID=mRNA_10094-protein|Name=jgi.p|Nanoce1779_2|609689|organism=Nannochloropsis oceanica|type=polypeptide|length=124bp
MSRSPVIHLCPHVLLLMVAGKQRPLSLRKEKSRLQGSRGRGRGEGSEAWP
KVQQDTTKKRDIDIGGFRRLIVYEGIDQPILEGVREIGQVMEEAEELGVL
LFPLTHLRGPPLLPLMLLMRLML*
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mRNA from alignment at scaffold_46:116148..116975-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10094 ID=mRNA_10094|Name=jgi.p|Nanoce1779_2|609689|organism=Nannochloropsis oceanica|type=mRNA|length=828bp|location=Sequence derived from alignment at scaffold_46:116148..116975- (Nannochloropsis oceanica)
CCCACGGTTCCGGACCTCTTCCTCTCTCCCCCTCCACCACCACCAGCTCC
ATGCCTCCCGCGGTGTCTACGGGCTTAAGCCTCAGAATGGAGAGGAGGTG
CTTCAGTGCAGTCCCTGCATGTCTCGAAGCCCAGTCATTCATCTCTGTCC
CCATGTCCTCCTGCTCATGGTGGCAGGCAAGCAGCGCCCTCTGAGTCTCA
GGAAGGAGAAAAGCCGCTTGCAAGGAAGCAGGGGAAGAGGCAGGGGGGAA
GGAAGCGAAGCATGGCCGAAGGTCCAGCAGGACACGACGAAGAAGCGGGA
TATAGATATAGGTGGCTTTAGGCGCTTGATTGTGTATGAAGGAATTGATC
AGCCAATTCTGGAGGGGGTGAGAGAGATAGGGCAGGTCATGGAAGAGGCG
GAGGAGCTCGGCGTGTTGCTTTTCCCCCTCACTCATCTTCGTGGACCGCC
ACTGCTGCCGCTGATGCTGCTGATGCGGCTGATGCTGTAGGTATGAAAGT
TGATGTTGGTGCTGTAGTTGTGCATAGTAGTACTGCTGCTGCTGCTGTTG
ATGTTGTTGTTGTTGTTGTTGTTGTTGTTCGTGATGGTGGTAAAAGAGAG
GCTGCTGTAGATACGATAGTTGATGCTGGTGCTCAAGTTGTGGATAGCAT
TGCTGCTGCACCTGCTGTAGCGGTCGTTCCGAAACCTGATGCTGGCAATT
GATTCGATGCTGGTGGCGCTGGTGGTGGTATGGATGGAAGTTGTCCTCCT
TTTCCTCCTCCTCCTCCCCATCCCCTTCTTCTTGTTGCATTTCCCTCGCT
TCCTCCGTGTTCATCTCGCCCGTCTTCC
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Coding sequence (CDS) from alignment at scaffold_46:116148..116975-

>mRNA_10094 ID=mRNA_10094|Name=jgi.p|Nanoce1779_2|609689|organism=Nannochloropsis oceanica|type=CDS|length=372bp|location=Sequence derived from alignment at scaffold_46:116148..116975- (Nannochloropsis oceanica)
ATGTCTCGAAGCCCAGTCATTCATCTCTGTCCCCATGTCCTCCTGCTCAT
GGTGGCAGGCAAGCAGCGCCCTCTGAGTCTCAGGAAGGAGAAAAGCCGCT
TGCAAGGAAGCAGGGGAAGAGGCAGGGGGGAAGGAAGCGAAGCATGGCCG
AAGGTCCAGCAGGACACGACGAAGAAGCGGGATATAGATATAGGTGGCTT
TAGGCGCTTGATTGTGTATGAAGGAATTGATCAGCCAATTCTGGAGGGGG
TGAGAGAGATAGGGCAGGTCATGGAAGAGGCGGAGGAGCTCGGCGTGTTG
CTTTTCCCCCTCACTCATCTTCGTGGACCGCCACTGCTGCCGCTGATGCT
GCTGATGCGGCTGATGCTGTAG
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Synonyms
Publications