jgi.p|Nanoce1779_2|609687, mRNA_10093 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609687
Unique NamemRNA_10093
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1198
Alignment locationscaffold_46:115073..116270 -

Link to JBrowse

Properties
Property NameValue
TranscriptId609773
TrackFilteredModels2
ProteinId609687
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_46supercontigscaffold_46:115073..116270 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609687gene_10093Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609687mRNA_10093-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10093CDS_10093Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10093 ID=mRNA_10093|Name=jgi.p|Nanoce1779_2|609687|organism=Nannochloropsis oceanica|type=mRNA|length=1198bp
GATGCTGGTGGCGCTGGTGGTGGTATGGATGGAAGTTGTCCTCCTTTTCC
TCCTCCTCCTCCCCATCCCCTTCTTCTTGTTGCATTTCCCTCGCTTCCTC
CGTGTTCATCTCGCCCGTCTTCCCTCCTCCTCCAAACCCCCCCTTGACCT
TGGCCTTCTTCCCTCCGTCCTTCATCCATATCAGTTCTCTCCTCTTACCG
AAACCTCCGGGCGTCAGCTTCAATCCTAGAGCCGCCAATACGATCGCAAC
TGCCCGCTGGCCCATTTTCGACAGGCCCCCCTCCATCCCTTCCTGCCTCA
CCCTTAGGAAGGTTGACTGGACCGGCAACGTCATCAACCACTTTCCAAGC
GCCTGCGGTGTTGAGAGAGGGCGAAAATGAGGGAGGGAGGGAGGAAGGGC
TCTGTAGAAGCGTTCCCAGAAGGAACGGAAGCACCAGAAGTAGTGGTGAT
TGGTGGCGGGGGAGATGAGCGTGTCGTCACGGAAGAGGCCGATCAGCAGA
TCTTGCAGGGCGGGGGTGAGGAATGGGGCGGAGGAGAAATAGGCTGGATA
GACATGACGTTGGCGCTTCCTCTTTTTCCGTGCTCTTTCTTCCCCCTGCA
TCACCTGGAAGCCCCCCTTCACATTCCTCTCGATCTCCTCTCCCTCTTCC
CCCACTCTCTGTTCCTTGTCTTGCTCTTGCTGCTGCTGCAGCTGGTGCAG
TGTTTCGTGGTGATGGTCGTCTTTGTCGTGGCCTCGTTTCTCTTTCTTGC
GATGAGGAGAGCGAGAGATGGGTACGGGACTGCCATGGCTGCTGGTGCTG
GTGCTGCTGGTGCTGGTGTTGCTGGTGCTGCTGGCATGGGCAGGACACTC
ACTGAGAGTATGGCTTGTTGTCATCTTCTTCGCCGGTGCAGTTGCAGACC
CGGGCTTAAGCTGTCGAGCAGTCGCGAGCTCTTTTTTTCCTTCTCTCTCT
TGCTTCTCATCGTGGCTGCGCTTCCCTTTCGTTAGCAGCCCCTCCGTCCC
CCTGTCTTTCCCTCTTCCCCACGAACTCTTACTGCTGTTTGAGTACTCTG
CATCTTCTTCTCGTTCACCCCCAAGGCCCGCCGACGACGGCAGAAAGAAA
GAAGACACCAATTGGTGCGTGCAGCGTTCCCCCTTCGCATGGTCGGCCCC
TGCTCCGGCAGAGGCGGGGGGATGGATGTCGCTCATTTTTCACGCCTG
back to top

protein sequence of jgi.p|Nanoce1779_2|609687

>mRNA_10093-protein ID=mRNA_10093-protein|Name=jgi.p|Nanoce1779_2|609687|organism=Nannochloropsis oceanica|type=polypeptide|length=203bp
MREGGRKGSVEAFPEGTEAPEVVVIGGGGDERVVTEEADQQILQGGGEEW
GGGEIGWIDMTLALPLFPCSFFPLHHLEAPLHIPLDLLSLFPHSLFLVLL
LLLLQLVQCFVVMVVFVVASFLFLAMRRARDGYGTAMAAGAGAAGAGVAG
AAGMGRTLTESMACCHLLRRCSCRPGLKLSSSRELFFSFSLLLLIVAALP
FR*
back to top

mRNA from alignment at scaffold_46:115073..116270-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10093 ID=mRNA_10093|Name=jgi.p|Nanoce1779_2|609687|organism=Nannochloropsis oceanica|type=mRNA|length=1198bp|location=Sequence derived from alignment at scaffold_46:115073..116270- (Nannochloropsis oceanica)
GATGCTGGTGGCGCTGGTGGTGGTATGGATGGAAGTTGTCCTCCTTTTCC
TCCTCCTCCTCCCCATCCCCTTCTTCTTGTTGCATTTCCCTCGCTTCCTC
CGTGTTCATCTCGCCCGTCTTCCCTCCTCCTCCAAACCCCCCCTTGACCT
TGGCCTTCTTCCCTCCGTCCTTCATCCATATCAGTTCTCTCCTCTTACCG
AAACCTCCGGGCGTCAGCTTCAATCCTAGAGCCGCCAATACGATCGCAAC
TGCCCGCTGGCCCATTTTCGACAGGCCCCCCTCCATCCCTTCCTGCCTCA
CCCTTAGGAAGGTTGACTGGACCGGCAACGTCATCAACCACTTTCCAAGC
GCCTGCGGTGTTGAGAGAGGGCGAAAATGAGGGAGGGAGGGAGGAAGGGC
TCTGTAGAAGCGTTCCCAGAAGGAACGGAAGCACCAGAAGTAGTGGTGAT
TGGTGGCGGGGGAGATGAGCGTGTCGTCACGGAAGAGGCCGATCAGCAGA
TCTTGCAGGGCGGGGGTGAGGAATGGGGCGGAGGAGAAATAGGCTGGATA
GACATGACGTTGGCGCTTCCTCTTTTTCCGTGCTCTTTCTTCCCCCTGCA
TCACCTGGAAGCCCCCCTTCACATTCCTCTCGATCTCCTCTCCCTCTTCC
CCCACTCTCTGTTCCTTGTCTTGCTCTTGCTGCTGCTGCAGCTGGTGCAG
TGTTTCGTGGTGATGGTCGTCTTTGTCGTGGCCTCGTTTCTCTTTCTTGC
GATGAGGAGAGCGAGAGATGGGTACGGGACTGCCATGGCTGCTGGTGCTG
GTGCTGCTGGTGCTGGTGTTGCTGGTGCTGCTGGCATGGGCAGGACACTC
ACTGAGAGTATGGCTTGTTGTCATCTTCTTCGCCGGTGCAGTTGCAGACC
CGGGCTTAAGCTGTCGAGCAGTCGCGAGCTCTTTTTTTCCTTCTCTCTCT
TGCTTCTCATCGTGGCTGCGCTTCCCTTTCGTTAGCAGCCCCTCCGTCCC
CCTGTCTTTCCCTCTTCCCCACGAACTCTTACTGCTGTTTGAGTACTCTG
CATCTTCTTCTCGTTCACCCCCAAGGCCCGCCGACGACGGCAGAAAGAAA
GAAGACACCAATTGGTGCGTGCAGCGTTCCCCCTTCGCATGGTCGGCCCC
TGCTCCGGCAGAGGCGGGGGGATGGATGTCGCTCATTTTTCACGCCTG
back to top

Coding sequence (CDS) from alignment at scaffold_46:115073..116270-

>mRNA_10093 ID=mRNA_10093|Name=jgi.p|Nanoce1779_2|609687|organism=Nannochloropsis oceanica|type=CDS|length=609bp|location=Sequence derived from alignment at scaffold_46:115073..116270- (Nannochloropsis oceanica)
ATGAGGGAGGGAGGGAGGAAGGGCTCTGTAGAAGCGTTCCCAGAAGGAAC
GGAAGCACCAGAAGTAGTGGTGATTGGTGGCGGGGGAGATGAGCGTGTCG
TCACGGAAGAGGCCGATCAGCAGATCTTGCAGGGCGGGGGTGAGGAATGG
GGCGGAGGAGAAATAGGCTGGATAGACATGACGTTGGCGCTTCCTCTTTT
TCCGTGCTCTTTCTTCCCCCTGCATCACCTGGAAGCCCCCCTTCACATTC
CTCTCGATCTCCTCTCCCTCTTCCCCCACTCTCTGTTCCTTGTCTTGCTC
TTGCTGCTGCTGCAGCTGGTGCAGTGTTTCGTGGTGATGGTCGTCTTTGT
CGTGGCCTCGTTTCTCTTTCTTGCGATGAGGAGAGCGAGAGATGGGTACG
GGACTGCCATGGCTGCTGGTGCTGGTGCTGCTGGTGCTGGTGTTGCTGGT
GCTGCTGGCATGGGCAGGACACTCACTGAGAGTATGGCTTGTTGTCATCT
TCTTCGCCGGTGCAGTTGCAGACCCGGGCTTAAGCTGTCGAGCAGTCGCG
AGCTCTTTTTTTCCTTCTCTCTCTTGCTTCTCATCGTGGCTGCGCTTCCC
TTTCGTTAG
back to top
Synonyms
Publications