jgi.p|Nanoce1779_2|609675, mRNA_10090 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609675
Unique NamemRNA_10090
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length640
Alignment locationscaffold_46:100776..101813 +

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Properties
Property NameValue
TranscriptId609761
TrackFilteredModels2
ProteinId609675
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_46supercontigscaffold_46:100776..101813 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609675gene_10090Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609675mRNA_10090-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10090CDS_10090Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10090 ID=mRNA_10090|Name=jgi.p|Nanoce1779_2|609675|organism=Nannochloropsis oceanica|type=mRNA|length=640bp
GCGGGGATGCAAAAAGCTTTTGAGGAGCTCGCGAGGGTGGAGAGTGACTG
CAGCAGTGCCAAAGCGGGGGGCAGCCTCGGGTTCTTTGGGCGCGGGTCCA
TGCAAAAGCCATTTGAAGACGCCTCCTTCGCTCTGGAGGTGGGCGAGCTG
AGCCAGATGGTCTCTACTGACAGTGGCGTACACATCATTTTTCGCGTGGC
TTAGGAATAGCTGGGAGAGATGGAGCAGTGAGGGAGGAAGGAGGGAGGAA
GGAGGGAGGAATGGGGGGCTTGGGGTACAGGTTATCCAAGATGTGAACAG
AGAGATGTGCTTGTGTACGTGCGTGTGTGTGCGCGTGGATCTGTGTGTAT
GCAGACGAGAGAATGAAAGAGAAATAAGGTAGTGGAATTGACGTGATCTT
CTGTTTCTCGGGTTTGGGCCTCTGTGCTGCTTGGGCAAGAAATGGGGGGG
TGGGGTCAAGGCGCCCTTGCTTTCTTTTGCTTGAACAGCATGCATTTTTT
CTTCACAAACTTGCAACCGTACACAAAGAGCGAAACATGACTAATAAATG
CAACTCATAACACACCATGGAAACCCCACGATTGCACTGTTGTGTTTCCA
GAGTATGACCACATGCAAGAGCGAGAAACACACGCCATTA
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protein sequence of jgi.p|Nanoce1779_2|609675

>mRNA_10090-protein ID=mRNA_10090-protein|Name=jgi.p|Nanoce1779_2|609675|organism=Nannochloropsis oceanica|type=polypeptide|length=66bp
MQKAFEELARVESDCSSAKAGGSLGFFGRGSMQKPFEDASFALEVGELSQ
MVSTDSGVHIIFRVA*
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mRNA from alignment at scaffold_46:100776..101813+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10090 ID=mRNA_10090|Name=jgi.p|Nanoce1779_2|609675|organism=Nannochloropsis oceanica|type=mRNA|length=1038bp|location=Sequence derived from alignment at scaffold_46:100776..101813+ (Nannochloropsis oceanica)
GCGGGGATGCAAAAAGCTTTTGAGGAGCTCGCGAGGGTAAGGAATTGGAT
GGAGGGAGGGAGGGGGGGAAGGACGACAGGCGGGAGAATCAGGGTAATCG
ATGACCCAAACAGCCCTCTTTAATTTACTTGAGAGGAGGCATGTTAATTT
TGCCATGCACACATAAGGAGGACGAATGTAATTTTGCCATGCACGCATGC
CCACGTGTACAGGTGGAGAGTGACTGCAGCAGTGCCAAAGCGGGGGGCAG
CCTCGGGTTCTTTGGGCGCGGGTCCATGCAAAAGCCATTTGAAGGTAAAG
AGGAAGGGGAGGAGGAAGTGGGATGTTGATAGCTCCTTGTTGCTTCTTTG
TTCATTTATTTTTTTATTTTGCTACGAGGAGACATCATCTCGCCCATTTA
CAAGCGATGGACTCAATAATACTGATAATAATAATGAAAATAATTGTCCC
GCCTCATCCGCTCTCCCCCTCCCTTTCTCCTCCCTCTCTCCCTTTACTCC
CCTTCCCTCCACGTAGACGCCTCCTTCGCTCTGGAGGTGGGCGAGCTGAG
CCAGATGGTCTCTACTGACAGTGGCGTACACATCATTTTTCGCGTGGCTT
AGGAATAGCTGGGAGAGATGGAGCAGTGAGGGAGGAAGGAGGGAGGAAGG
AGGGAGGAATGGGGGGCTTGGGGTACAGGTTATCCAAGATGTGAACAGAG
AGATGTGCTTGTGTACGTGCGTGTGTGTGCGCGTGGATCTGTGTGTATGC
AGACGAGAGAATGAAAGAGAAATAAGGTAGTGGAATTGACGTGATCTTCT
GTTTCTCGGGTTTGGGCCTCTGTGCTGCTTGGGCAAGAAATGGGGGGGTG
GGGTCAAGGCGCCCTTGCTTTCTTTTGCTTGAACAGCATGCATTTTTTCT
TCACAAACTTGCAACCGTACACAAAGAGCGAAACATGACTAATAAATGCA
ACTCATAACACACCATGGAAACCCCACGATTGCACTGTTGTGTTTCCAGA
GTATGACCACATGCAAGAGCGAGAAACACACGCCATTA
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Coding sequence (CDS) from alignment at scaffold_46:100776..101813+

>mRNA_10090 ID=mRNA_10090|Name=jgi.p|Nanoce1779_2|609675|organism=Nannochloropsis oceanica|type=CDS|length=594bp|location=Sequence derived from alignment at scaffold_46:100776..101813+ (Nannochloropsis oceanica)
ATGCAAAAAGCTTTTGAGGAGCTCGCGAGGGTGGAGAGTGACTGCAGCAG
TGCCAAAGCGGGGGGCAGCCTCGGGTTCTTTGGGCGCGGGTCCATGCAAA
AGCCATTTGAAGACGCCTCCTTCGCTCTGGAGGTGGGCGAGCTGAGCCAG
ATGGTCTCTACTGACAGTGGCGTACACATCATTTTTCGCGTGGCTTAGAT
GCAAAAAGCTTTTGAGGAGCTCGCGAGGGTGGAGAGTGACTGCAGCAGTG
CCAAAGCGGGGGGCAGCCTCGGGTTCTTTGGGCGCGGGTCCATGCAAAAG
CCATTTGAAGACGCCTCCTTCGCTCTGGAGGTGGGCGAGCTGAGCCAGAT
GGTCTCTACTGACAGTGGCGTACACATCATTTTTCGCGTGGCTTAGATGC
AAAAAGCTTTTGAGGAGCTCGCGAGGGTGGAGAGTGACTGCAGCAGTGCC
AAAGCGGGGGGCAGCCTCGGGTTCTTTGGGCGCGGGTCCATGCAAAAGCC
ATTTGAAGACGCCTCCTTCGCTCTGGAGGTGGGCGAGCTGAGCCAGATGG
TCTCTACTGACAGTGGCGTACACATCATTTTTCGCGTGGCTTAG
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Synonyms
Publications