jgi.p|Nanoce1779_2|609662, mRNA_10088 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|609662
Unique Name	mRNA_10088
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1521
Alignment location	scaffold_46:92229..93749 +

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Properties


Property Name	Value
TranscriptId	609748
Track	FilteredModels2
ProteinId	609662

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_46	supercontig	scaffold_46:92229..93749 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609662	gene_10088	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609662	mRNA_10088-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10088	CDS_10088	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_46:92229..93749+
coding sequence from alignment at scaffold_46:92229..93749+

mRNA sequence

>mRNA_10088 ID=mRNA_10088|Name=jgi.p|Nanoce1779_2|609662|organism=Nannochloropsis oceanica|type=mRNA|length=1521bp
CAGGCCTGCACATTACGAACTAAAAAATGTCCCTGTCTGAGTCTAAGGAA
AAATGGACGGCCCGCCTATTTGTGCTCATGATCATGCTGCATGTGGCGCA
GACCCTGTTGGTGGCCGAAGATGTCATGTGGAAGCACTGCTGCCTGCCTT
CTTTTGCCTCGCTGATCCAAATTACACCAGGCATCTACCCTCTCCACTTC
CTAATTCACGTGTCTTCTATAATTTTCCGCTGGGTTGGCCACTCGCTCTT
CCATGTGGATGTCTCGCATCTCTTTAGTAACCTCCTCCTCTTTGCATGGG
TTGGGCCGGCACTCGAGCACGGCCACGACGGATTCTTAGGAGAAGGGGTG
AGTGAACGAGTTATGACAATTGAAATTCATACACAAGGGCTCTTTCTAAA
CTTCCATATTGCACAGGGCTATGTACTCTTGCTTTTGTTTATCTGGTGCT
GCAAACCTCTGGTCGCTGGACTTCTGACGGCACTCCTGTGGCCAGGTAAG
AATTCTATTACGGACTATACAGAAAGTTATTTAAGTTTTCTATTATTTTT
ATTTTTAAGGGGTTTATTCGCCTCTAGGCGCTTTGCCGCCGGCATGGTGA
CAGCTACTTCTATCATATTTTGAGCACCAAAATAAGCCCGCCCCGCATGT
GAAGGGGATGGAGATGAAATGAGAAAGAGAGTCGGCTTTTTTGAGGCTCA
AATCTAATCTCAATTCCATAGACAGTGTAGCTCGGGTAATTCTCAAGTCG
TACGTTAAAACATGACGCAGTCTACAATTTGCCTTACTTCTTTCATTTCT
ATTCACTGGTCCTTCCACCTATCCAGGAACGTACAAGTGCAGTACGGGGT
TTGCTGGCGTTTACTATGGCTTGCTAGCAGTCGAAGTTTGTCTCTTCTAT
CGCAGCCGGCGCATATGGGAAGTAGCAGGCCTGGTCAAGCATGCTTTTTT
ATTAAAAACTATTATTTTGGTATGGGAAGAGCTCCGTGCAGACTCCTCAG
TGTTGAAGGACAAGTCTGACGGAACCCACCATGCGGGTCATTTGGCAGGC
ATACTGACGGGTTGCCTCTTTATGCTTGTAATGCAATACTCCCTCCGTTT
CCAAAACCTCGCTCGGAAAATATGCAGGCGATGGGCTCTGCCGTTTCCGT
TCTTAGACGAGACGAGTATCGCGACGATCGCCAAAGAGGGGGATGATACA
AGTAAAGGAATCGTGGACGGCGCTTAGAAAATGATCGTTGACCGAGCAAA
TTACTGACGAAACAAATCAAAATGTCTGAAAATGTATTCCAGCATTCTCC
AGGACCAAAAGCTTTTGCCATGAAAATATCATGGTGACAAGAATTTCGCT
TTTCTTCTCCTTTCTATACGGACATCAGTTCCTACCATTTCCTACACACC
CCACCTCATCTAGCACCAGCTCTATTTTCCCCTCCCTTTCCCCGTCGCCC
CCCTTTTCTACCCTCCACACCTCTCCAATCACGCATGCGGCCCCATACCC
CGCAGCCCGCAAGGCCACCAT

protein sequence of jgi.p|Nanoce1779_2|609662

>mRNA_10088-protein ID=mRNA_10088-protein|Name=jgi.p|Nanoce1779_2|609662|organism=Nannochloropsis oceanica|type=polypeptide|length=199bp
MSLSESKEKWTARLFVLMIMLHVAQTLLVAEDVMWKHCCLPSFASLIQIT
PGIYPLHFLIHVSSIIFRWVGHSLFHVDVSHLFSNLLLFAWVGPALEHGH
DGFLGEGVSERVMTIEIHTQGLFLNFHIAQGYVLLLLFIWCCKPLVAGLL
TALLWPGKNSITDYTESYLSFLLFLFLRGLFASRRFAAGMVTATSIIF*

mRNA from alignment at scaffold_46:92229..93749+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10088 ID=mRNA_10088|Name=jgi.p|Nanoce1779_2|609662|organism=Nannochloropsis oceanica|type=mRNA|length=1521bp|location=Sequence derived from alignment at scaffold_46:92229..93749+ (Nannochloropsis oceanica)
CAGGCCTGCACATTACGAACTAAAAAATGTCCCTGTCTGAGTCTAAGGAA
AAATGGACGGCCCGCCTATTTGTGCTCATGATCATGCTGCATGTGGCGCA
GACCCTGTTGGTGGCCGAAGATGTCATGTGGAAGCACTGCTGCCTGCCTT
CTTTTGCCTCGCTGATCCAAATTACACCAGGCATCTACCCTCTCCACTTC
CTAATTCACGTGTCTTCTATAATTTTCCGCTGGGTTGGCCACTCGCTCTT
CCATGTGGATGTCTCGCATCTCTTTAGTAACCTCCTCCTCTTTGCATGGG
TTGGGCCGGCACTCGAGCACGGCCACGACGGATTCTTAGGAGAAGGGGTG
AGTGAACGAGTTATGACAATTGAAATTCATACACAAGGGCTCTTTCTAAA
CTTCCATATTGCACAGGGCTATGTACTCTTGCTTTTGTTTATCTGGTGCT
GCAAACCTCTGGTCGCTGGACTTCTGACGGCACTCCTGTGGCCAGGTAAG
AATTCTATTACGGACTATACAGAAAGTTATTTAAGTTTTCTATTATTTTT
ATTTTTAAGGGGTTTATTCGCCTCTAGGCGCTTTGCCGCCGGCATGGTGA
CAGCTACTTCTATCATATTTTGAGCACCAAAATAAGCCCGCCCCGCATGT
GAAGGGGATGGAGATGAAATGAGAAAGAGAGTCGGCTTTTTTGAGGCTCA
AATCTAATCTCAATTCCATAGACAGTGTAGCTCGGGTAATTCTCAAGTCG
TACGTTAAAACATGACGCAGTCTACAATTTGCCTTACTTCTTTCATTTCT
ATTCACTGGTCCTTCCACCTATCCAGGAACGTACAAGTGCAGTACGGGGT
TTGCTGGCGTTTACTATGGCTTGCTAGCAGTCGAAGTTTGTCTCTTCTAT
CGCAGCCGGCGCATATGGGAAGTAGCAGGCCTGGTCAAGCATGCTTTTTT
ATTAAAAACTATTATTTTGGTATGGGAAGAGCTCCGTGCAGACTCCTCAG
TGTTGAAGGACAAGTCTGACGGAACCCACCATGCGGGTCATTTGGCAGGC
ATACTGACGGGTTGCCTCTTTATGCTTGTAATGCAATACTCCCTCCGTTT
CCAAAACCTCGCTCGGAAAATATGCAGGCGATGGGCTCTGCCGTTTCCGT
TCTTAGACGAGACGAGTATCGCGACGATCGCCAAAGAGGGGGATGATACA
AGTAAAGGAATCGTGGACGGCGCTTAGAAAATGATCGTTGACCGAGCAAA
TTACTGACGAAACAAATCAAAATGTCTGAAAATGTATTCCAGCATTCTCC
AGGACCAAAAGCTTTTGCCATGAAAATATCATGGTGACAAGAATTTCGCT
TTTCTTCTCCTTTCTATACGGACATCAGTTCCTACCATTTCCTACACACC
CCACCTCATCTAGCACCAGCTCTATTTTCCCCTCCCTTTCCCCGTCGCCC
CCCTTTTCTACCCTCCACACCTCTCCAATCACGCATGCGGCCCCATACCC
CGCAGCCCGCAAGGCCACCAT

Coding sequence (CDS) from alignment at scaffold_46:92229..93749+

>mRNA_10088 ID=mRNA_10088|Name=jgi.p|Nanoce1779_2|609662|organism=Nannochloropsis oceanica|type=CDS|length=597bp|location=Sequence derived from alignment at scaffold_46:92229..93749+ (Nannochloropsis oceanica)
ATGTCCCTGTCTGAGTCTAAGGAAAAATGGACGGCCCGCCTATTTGTGCT
CATGATCATGCTGCATGTGGCGCAGACCCTGTTGGTGGCCGAAGATGTCA
TGTGGAAGCACTGCTGCCTGCCTTCTTTTGCCTCGCTGATCCAAATTACA
CCAGGCATCTACCCTCTCCACTTCCTAATTCACGTGTCTTCTATAATTTT
CCGCTGGGTTGGCCACTCGCTCTTCCATGTGGATGTCTCGCATCTCTTTA
GTAACCTCCTCCTCTTTGCATGGGTTGGGCCGGCACTCGAGCACGGCCAC
GACGGATTCTTAGGAGAAGGGGTGAGTGAACGAGTTATGACAATTGAAAT
TCATACACAAGGGCTCTTTCTAAACTTCCATATTGCACAGGGCTATGTAC
TCTTGCTTTTGTTTATCTGGTGCTGCAAACCTCTGGTCGCTGGACTTCTG
ACGGCACTCCTGTGGCCAGGTAAGAATTCTATTACGGACTATACAGAAAG
TTATTTAAGTTTTCTATTATTTTTATTTTTAAGGGGTTTATTCGCCTCTA
GGCGCTTTGCCGCCGGCATGGTGACAGCTACTTCTATCATATTTTGA

Synonyms

Publications