jgi.p|Nanoce1779_2|609632, mRNA_10082 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609632
Unique NamemRNA_10082
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length333
Alignment locationscaffold_46:69072..69404 -

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Properties
Property NameValue
TranscriptId609718
TrackFilteredModels2
ProteinId609632
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_46supercontigscaffold_46:69072..69404 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609632gene_10082Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609632mRNA_10082-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10082CDS_10082Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10082 ID=mRNA_10082|Name=jgi.p|Nanoce1779_2|609632|organism=Nannochloropsis oceanica|type=mRNA|length=333bp
ATGTCGCTTCGGTGCATGTGGTGCTACATGTCACACACACTTTCCATCGC
TTTAGCTTTCTCGCTTCCTGTTTCTACCTCTACTCGCCTGGTGCTTTTCA
CTCCCGAGGTGCCCGCCAACCATCTTTCTTGTTATCAACAATGCGAAAGA
AATTTACTTAGTCTACACATACTGATGTCTATGTCCTATCTCTATACTTC
TTACATATCTGTATAAAAAACACAAAATGCATACTCTAATGCACGTGACA
TACCCACGGTCATTTCGTTCCAGCGTCTCCTCCCTCCTTCCCTTCTTACA
TGCCCCTTCATCTCCTTACTCGTATTCTCAATT
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protein sequence of jgi.p|Nanoce1779_2|609632

>mRNA_10082-protein ID=mRNA_10082-protein|Name=jgi.p|Nanoce1779_2|609632|organism=Nannochloropsis oceanica|type=polypeptide|length=72bp
MSLRCMWCYMSHTLSIALAFSLPVSTSTRLVLFTPEVPANHLSCYQQCER
NLLSLHILMSMSYLYTSYISV*
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mRNA from alignment at scaffold_46:69072..69404-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10082 ID=mRNA_10082|Name=jgi.p|Nanoce1779_2|609632|organism=Nannochloropsis oceanica|type=mRNA|length=333bp|location=Sequence derived from alignment at scaffold_46:69072..69404- (Nannochloropsis oceanica)
ATGTCGCTTCGGTGCATGTGGTGCTACATGTCACACACACTTTCCATCGC
TTTAGCTTTCTCGCTTCCTGTTTCTACCTCTACTCGCCTGGTGCTTTTCA
CTCCCGAGGTGCCCGCCAACCATCTTTCTTGTTATCAACAATGCGAAAGA
AATTTACTTAGTCTACACATACTGATGTCTATGTCCTATCTCTATACTTC
TTACATATCTGTATAAAAAACACAAAATGCATACTCTAATGCACGTGACA
TACCCACGGTCATTTCGTTCCAGCGTCTCCTCCCTCCTTCCCTTCTTACA
TGCCCCTTCATCTCCTTACTCGTATTCTCAATT
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Coding sequence (CDS) from alignment at scaffold_46:69072..69404-

>mRNA_10082 ID=mRNA_10082|Name=jgi.p|Nanoce1779_2|609632|organism=Nannochloropsis oceanica|type=CDS|length=216bp|location=Sequence derived from alignment at scaffold_46:69072..69404- (Nannochloropsis oceanica)
ATGTCGCTTCGGTGCATGTGGTGCTACATGTCACACACACTTTCCATCGC
TTTAGCTTTCTCGCTTCCTGTTTCTACCTCTACTCGCCTGGTGCTTTTCA
CTCCCGAGGTGCCCGCCAACCATCTTTCTTGTTATCAACAATGCGAAAGA
AATTTACTTAGTCTACACATACTGATGTCTATGTCCTATCTCTATACTTC
TTACATATCTGTATAA
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Synonyms
Publications