jgi.p|Nanoce1779_2|317483, mRNA_10081 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|317483
Unique Name	mRNA_10081
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1835
Alignment location	scaffold_46:67003..69094 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	317569
Track	FilteredModels2
ProteinId	317483

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_46	supercontig	scaffold_46:67003..69094 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|317483	gene_10081	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|317483	mRNA_10081-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10081	CDS_10081	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_46:67003..69094+
coding sequence from alignment at scaffold_46:67003..69094+

mRNA sequence

>mRNA_10081 ID=mRNA_10081|Name=jgi.p|Nanoce1779_2|317483|organism=Nannochloropsis oceanica|type=mRNA|length=1835bp
GCACTGCCCTCCTTACCCTTCCTTCAATAAAGGCCGCCGTGAACATGCTC
TTTCTATACGCTTACACCCTTGTACGTGCGTATTTACTGCATAGGCGTAC
AGGCCGGACCATCGTCTCCTACCGCATCGCCAGCCCAGGACTTTCCGGCT
CCTCCCTCCCAGGACGCACCAGCCACGCCATGCTCACACTTGACGATCTC
CATGCTGCTATCGAATCATTTCAACCAGACGTCGTCGTCGTGGGTGCAGG
TGTGGCGGGTGCCTCCGTAACCTACCACCTGACCCATCCCCCCTCCTCCC
CCTCCTCCACCTACGCCCCGCCGTCCCTTCCCCTCCCCCGTGTCCTGCTT
CTCGACGCCGGCAAGGCAGGCCAGGGCCGTCAAAGAGATCTAGCTGGGGA
GCCATCATTTCTCACGTCCGACGTTTCCTCCGCAGATTCTTCCGTTCCTC
ATCACCCGGACGACCGTCAAGATGATCGTGACTGTCTATCCGTCTTCCTC
ATCCTCCTTCATCGCCCACCACGGCGAGAGGGGCGCGAGGACCTATCTCC
GGTTCGCTTCCCAGGGCGTGGAGATGCAAAAAACGCTCGCTAAGCGATTG
TGCATGGCGGGAGATAGGGAAGGAGAGGGGACAGGAGGATATGGGGGGTT
GGTCGAGAAAGGATCGATGTACGTGTGTAGCAAAGGGGAGGAGGATGCGT
TTTGGGAGGAGTTTCAACTGTTGCGGCGGCTGATGCTGCCGGAGGGGCAG
AGGGAAGAGGGGAGGGACGAGGCGAGAGAGGAGCCGTCATCCTCTCCCAT
CCGCTGGTGCGAAGAGGAGGAGGTAGTGGCAATGCATGGGTCCCAAGCAG
GCTTCACTCGCGGTATTTTCTTCCCCCAGGACGCCGTCATCGACTCCACC
TCCTACACTCATGCCCTGATCCAAGCTGCCGTCGCCACAGGCCGAGCGTT
GCTCCTCGAGGACTGTCCTGCCGTCGAGGGGGTAGAGGAGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGGTGATTTTATCATTTAATTCTTTATTC
GAGGAAGGCAACACATCTGTTGTCAAGATAAGAGTGCCTCGCACTGTCAT
TGCCACGGGCGGGTTCTTCCTCTCCCCTTCCCCCCTCGCTGGCATCCTTC
GCCCCTGCTTCTCCTATCTAGCTGCCGTCCCATCCCTTCCTTCCCAGCCT
CCCTCCGGTCCCAGCCCGAATTTCTTCACGTTCGGGTTTACGCATGACTG
GTGTGTGGTGGCGTCGGGTCATGTGAGGGTGAGTGGTGAAGATCACTTTT
CGGCGCTCAAGCCTCCCAGGCGGAAGGCACGTTCACGGGCGCTGGTGGAG
TGGGTGAGGGCGAGGTATGGAGGGAAGGAGGGAGGGAGGAAGGGGAGGAT
ACGGGTGGCGGATGCATCGGAGTTGAGGGCGGGAGGGAGGGAGGGCGAGG
AGGAGGAAGTGCTGGGGAATGCACGGCATGGAGTGTACGGCGAGACACCG
GATTCGTTGCCATTGGTGGGCAGTGACGGGAAGAGAGGGAAGGAAGGAGA
GAAGAAGGGAGGAAAGGGGGGAGGCAAGGGGCGGCTGGTGTACTGTTTGG
GGTGCAACGCGTGGGGGCAGTCGAGCCTGACGTACGCTGCAAGTCTTGTG
CCTGGCCTATTGGGATATCGAGAGCTGTCGGCCGAGCAGGAAGAGGCCGC
GCGCTTGATGTCTGTCCGACGCTTCCGTAGAGATCGATGAGAAGGGTAAG
AATCAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGA
GGAGGAGGAATAAATTGAGAATACGAGTAAGGAGA

protein sequence of jgi.p|Nanoce1779_2|317483

>mRNA_10081-protein ID=mRNA_10081-protein|Name=jgi.p|Nanoce1779_2|317483|organism=Nannochloropsis oceanica|type=polypeptide|length=423bp
MIVTVYPSSSSSFIAHHGERGARTYLRFASQGVEMQKTLAKRLCMAGDRE
GEGTGGYGGLVEKGSMYVCSKGEEDAFWEEFQLLRRLMLPEGQREEGRDE
AREEPSSSPIRWCEEEEVVAMHGSQAGFTRGIFFPQDAVIDSTSYTHALI
QAAVATGRALLLEDCPAVEGVEEEGGREGGREGGVILSFNSLFEEGNTSV
VKIRVPRTVIATGGFFLSPSPLAGILRPCFSYLAAVPSLPSQPPSGPSPN
FFTFGFTHDWCVVASGHVRVSGEDHFSALKPPRRKARSRALVEWVRARYG
GKEGGRKGRIRVADASELRAGGREGEEEEVLGNARHGVYGETPDSLPLVG
SDGKRGKEGEKKGGKGGGKGRLVYCLGCNAWGQSSLTYAASLVPGLLGYR
ELSAEQEEAARLMSVRRFRRDR*

mRNA from alignment at scaffold_46:67003..69094+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10081 ID=mRNA_10081|Name=jgi.p|Nanoce1779_2|317483|organism=Nannochloropsis oceanica|type=mRNA|length=2092bp|location=Sequence derived from alignment at scaffold_46:67003..69094+ (Nannochloropsis oceanica)
GCACTGCCCTCCTTACCCTTCCTTCAATAAAGGCCGCCGTGAACATGCTC
TTTCTATACGCTTACACCCTTGTACGTGCGTATTTACTGCATAGGCGTAC
AGGCCGGACCATCGTCTCCTACCGCATCGCCAGCCCAGGACTTTCCGGCT
CCTCCCTCCCAGGACGCACCAGCCACGCCATGCTCACACTTGACGATCTC
CATGCTGCTATCGAATCATTTCAACCAGACGTCGTCGTCGTGGGTGCAGG
TGTGGCGGGTGCCTCCGTAACCTACCACCTGACCCATCCCCCCTCCTCCC
CCTCCTCCACCTACGCCCCGCCGTCCCTTCCCCTCCCCCGTGTCCTGCTT
CTCGACGCCGGCAAGGCAGGCCAGGGCCGTCAAAGAGATCTAGCTGGGGA
GCCATCATTTCTCACGTCCGACGTTTCCTCCGCAGATTCTTCCGTTCCTC
ATCACCCGGACGGTGAGTCCTCCTCCTCCTCCACTTTCCCCTTTCACCCC
AGCGGAACCGCCGTATTCCCCTCTTCTTCCTCCTCCTCTTCCTCCTCCTC
TACTTCCCTCCCTTCCGCTTGCCAGACCGTCAAGATGATCGTGACTGTCT
ATCCGTCTTCCTCATCCTCCTTCATCGCCCACCACGGCGAGAGGGGCGCG
AGGACCTATCTCCGGTTCGCTTCCCAGGGCGTGGAGATGCAAAAAACGCT
CGCTAAGCGATTGTGCATGGCGGGAGATAGGGAAGGAGAGGGGACAGGAG
GATATGGGGGGTTGGTCGAGAAAGGATCGATGTACGTGTGTAGCAAAGGG
GAGGAGGATGCGTTTTGGGAGGAGTTTCAACTGTTGCGGCGGCTGATGCT
GCCGGAGGGGCAGAGGGAAGAGGGGAGGGACGAGGCGAGAGAGGAGCCGT
CATCCTCTCCCATCCGCTGGTGCGAAGAGGAGGAGGTAGTGGCAATGCAT
GGGTCCCAAGCAGGTATGTAAGCCATCCCCGACTCCCCCCCCCTCCCCCT
ATTCCCTCTCCTTCACATCATCCTGACGCTTCTACTTCTCCTCCTCCGTA
TTTTTCTCCTCCCCTCCCCGTCCCTCGCTCCTTCTATCCCTCCCTCATTT
CCTCCAGGCTTCACTCGCGGTATTTTCTTCCCCCAGGACGCCGTCATCGA
CTCCACCTCCTACACTCATGCCCTGATCCAAGCTGCCGTCGCCACAGGCC
GAGCGTTGCTCCTCGAGGACTGTCCTGCCGTCGAGGGGGTAGAGGAGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGTGATTTTATCATTTAATTC
TTTATTCGAGGAAGGCAACACATCTGTTGTCAAGATAAGAGTGCCTCGCA
CTGTCATTGCCACGGGCGGGTTCTTCCTCTCCCCTTCCCCCCTCGCTGGC
ATCCTTCGCCCCTGCTTCTCCTATCTAGCTGCCGTCCCATCCCTTCCTTC
CCAGCCTCCCTCCGGTCCCAGCCCGAATTTCTTCACGTTCGGGTTTACGC
ATGACTGGTGTGTGGTGGCGTCGGGTCATGTGAGGGTGAGTGGTGAAGAT
CACTTTTCGGCGCTCAAGCCTCCCAGGCGGAAGGCACGTTCACGGGCGCT
GGTGGAGTGGGTGAGGGCGAGGTATGGAGGGAAGGAGGGAGGGAGGAAGG
GGAGGATACGGGTGGCGGATGCATCGGAGTTGAGGGCGGGAGGGAGGGAG
GGCGAGGAGGAGGAAGTGCTGGGGAATGCACGGCATGGAGTGTACGGCGA
GACACCGGATTCGTTGCCATTGGTGGGCAGTGACGGGAAGAGAGGGAAGG
AAGGAGAGAAGAAGGGAGGAAAGGGGGGAGGCAAGGGGCGGCTGGTGTAC
TGTTTGGGGTGCAACGCGTGGGGGCAGTCGAGCCTGACGTACGCTGCAAG
TCTTGTGCCTGGCCTATTGGGATATCGAGAGCTGTCGGCCGAGCAGGAAG
AGGCCGCGCGCTTGATGTCTGTCCGACGCTTCCGTAGAGATCGATGAGAA
GGGTAAGAATCAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGG
AGGAGGAGGAGGAGGAATAAATTGAGAATACGAGTAAGGAGA

Coding sequence (CDS) from alignment at scaffold_46:67003..69094+

>mRNA_10081 ID=mRNA_10081|Name=jgi.p|Nanoce1779_2|317483|organism=Nannochloropsis oceanica|type=CDS|length=2538bp|location=Sequence derived from alignment at scaffold_46:67003..69094+ (Nannochloropsis oceanica)
ATGATCGTGACTGTCTATCCGTCTTCCTCATCCTCCTTCATCGCCCACCA
CGGCGAGAGGGGCGCGAGGACCTATCTCCGGTTCGCTTCCCAGGGCGTGG
AGATGCAAAAAACGCTCGCTAAGCGATTGTGCATGGCGGGAGATAGGGAA
GGAGAGGGGACAGGAGGATATGGGGGGTTGGTCGAGAAAGGATCGATGTA
CGTGTGTAGCAAAGGGGAGGAGGATGCGTTTTGGGAGGAGTTTCAACTGT
TGCGGCGGCTGATGCTGCCGGAGGGGCAGAGGGAAGAGGGGAGGGACGAG
GCGAGAGAGGAGCCGTCATCCTCTCCCATCCGCTGGTGCGAAGAGGAGGA
GGTAGTGGCAATGCATGGGTCCCAAGCAGGCTTCACTCGCGGTATTTTCT
TCCCCCAGGACGCCGTCATCGACTCCACCTCCTACACTCATGCCCTGATC
CAAGCTGCCGTCGCCACAGGCCGAGCGTTGCTCCTCGAGGACTGTCCTGC
CGTCGAGGGGGTAGAGGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGGTGATTTTATCATTTAATTCTTTATTCGAGGAAGGCAACACATCTGTT
GTCAAGATAAGAGTGCCTCGCACTGTCATTGCCACGGGCGGGTTCTTCCT
CTCCCCTTCCCCCCTCGCTGGCATCCTTCGCCCCTGCTTCTCCTATCTAG
CTGCCGTCCCATCCCTTCCTTCCCAGCCTCCCTCCGGTCCCAGCCCGAAT
TTCTTCACGTTCGGGTTTACGCATGACTGGTGTGTGGTGGCGTCGGGTCA
TGTGAGGGTGAGTGGTGAAGATCACTTTTCGGCGCTCAAGCCTCCCAGGC
GGAAGGCACGTTCACGGGCGCTGGTGGAGTGGGTGAGGGCGAGGTATGGA
GGGAAGGAGGGAGGGAGGAAGGGGAGGATACGGGTGGCGGATGCATCGGA
GTTGAGGGCGGGAGGGAGGGAGGGCGAGGAGGAGGAAGTGCTGGGGAATG
CACGGCATGGAGTGTACGGCGAGACACCGGATTCGTTGCCATTGGTGGGC
AGTGACGGGAAGAGAGGGAAGGAAGGAGAGAAGAAGGGAGGAAAGGGGGG
AGGCAAGGGGCGGCTGGTGTACTGTTTGGGGTGCAACGCGTGGGGGCAGT
CGAGCCTGACGTACGCTGCAAGTCTTGTGCCTGGCCTATTGGGATATCGA
GAGCTGTCGGCCGAGCAGGAAGAGGCCGCGCGCTTGATGTCTGTCCGACG
CTTCCGTAGAGATCGATGAATGATCGTGACTGTCTATCCGTCTTCCTCAT
CCTCCTTCATCGCCCACCACGGCGAGAGGGGCGCGAGGACCTATCTCCGG
TTCGCTTCCCAGGGCGTGGAGATGCAAAAAACGCTCGCTAAGCGATTGTG
CATGGCGGGAGATAGGGAAGGAGAGGGGACAGGAGGATATGGGGGGTTGG
TCGAGAAAGGATCGATGTACGTGTGTAGCAAAGGGGAGGAGGATGCGTTT
TGGGAGGAGTTTCAACTGTTGCGGCGGCTGATGCTGCCGGAGGGGCAGAG
GGAAGAGGGGAGGGACGAGGCGAGAGAGGAGCCGTCATCCTCTCCCATCC
GCTGGTGCGAAGAGGAGGAGGTAGTGGCAATGCATGGGTCCCAAGCAGGC
TTCACTCGCGGTATTTTCTTCCCCCAGGACGCCGTCATCGACTCCACCTC
CTACACTCATGCCCTGATCCAAGCTGCCGTCGCCACAGGCCGAGCGTTGC
TCCTCGAGGACTGTCCTGCCGTCGAGGGGGTAGAGGAGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGGTGATTTTATCATTTAATTCTTTATTCGA
GGAAGGCAACACATCTGTTGTCAAGATAAGAGTGCCTCGCACTGTCATTG
CCACGGGCGGGTTCTTCCTCTCCCCTTCCCCCCTCGCTGGCATCCTTCGC
CCCTGCTTCTCCTATCTAGCTGCCGTCCCATCCCTTCCTTCCCAGCCTCC
CTCCGGTCCCAGCCCGAATTTCTTCACGTTCGGGTTTACGCATGACTGGT
GTGTGGTGGCGTCGGGTCATGTGAGGGTGAGTGGTGAAGATCACTTTTCG
GCGCTCAAGCCTCCCAGGCGGAAGGCACGTTCACGGGCGCTGGTGGAGTG
GGTGAGGGCGAGGTATGGAGGGAAGGAGGGAGGGAGGAAGGGGAGGATAC
GGGTGGCGGATGCATCGGAGTTGAGGGCGGGAGGGAGGGAGGGCGAGGAG
GAGGAAGTGCTGGGGAATGCACGGCATGGAGTGTACGGCGAGACACCGGA
TTCGTTGCCATTGGTGGGCAGTGACGGGAAGAGAGGGAAGGAAGGAGAGA
AGAAGGGAGGAAAGGGGGGAGGCAAGGGGCGGCTGGTGTACTGTTTGGGG
TGCAACGCGTGGGGGCAGTCGAGCCTGACGTACGCTGCAAGTCTTGTGCC
TGGCCTATTGGGATATCGAGAGCTGTCGGCCGAGCAGGAAGAGGCCGCGC
GCTTGATGTCTGTCCGACGCTTCCGTAGAGATCGATGA

Synonyms

Publications