jgi.p|Nanoce1779_2|609628, mRNA_10080 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609628
Unique NamemRNA_10080
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length848
Alignment locationscaffold_46:66081..66928 +

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Properties
Property NameValue
TranscriptId609714
TrackFilteredModels2
ProteinId609628
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_46supercontigscaffold_46:66081..66928 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609628gene_10080Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609628mRNA_10080-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10080CDS_10080Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10080 ID=mRNA_10080|Name=jgi.p|Nanoce1779_2|609628|organism=Nannochloropsis oceanica|type=mRNA|length=848bp
CCCTCCCTCCCTTTCTCCCTTCCTCCTTCGGGCCCCCACTCGGCACAGGC
AGGGTCGAGCTGGAGAGTGTTCCAGGCCAAGGTGGTGTAGGCGTCGTGAA
GGGATGATGATGATGAGGAGGAGGGGGATGCCGAGTCGATAGAGAGAGGG
ATGAGGTCCGGAAGGGGAAGGTAGAGGGACTGTGAAAGGGCGGGTGAGTT
CATGTGAGCGAGGGGATGGTGGCGTGAGGGAGAAGAAAGAGACAAGAAGC
GGAAAATGATGGAAAATTATGGACAGCACCGCCGCAATGCCGATGTCACA
TCCTCCCCAGACACAGTCATTTATGCACTCTTTCGTCGTCTCCGAGACGC
TCTTCATCCTGTTCCTCCCTCAAGGCCTCTTCCACCAAGAAACCGGCCTC
CCCGTACGCACCTCATTCTCATCCTCCTGCTGCTCCTCGTCTTCGTCCTC
ATTCTCGTTTCCAATCTCTCCTCCCTGTCCCATATACAGCACCGCTTGCA
GCTCGATACTCGTGCCGGCATAGGGCAGACTCACGTGGTAGTACTCTTGC
AGTGGACCGCCGCTGCAGCTGCTGTTGCCTTTCGCTCCACCTTTTCCGTC
GAGTCGGCGGAGCGTGACGCCCTTCTTGAGGCAGTAGTCGACTTGAGTTT
CGAGAAGGGAGCGGCGGCGGCGGCGCCGTGAAGATGGGAGGAGAAAGGTC
ATGACCGTTCCGGGGGGTTACGGTGTCCCGAAGGAAGGGGTCGGGCTACT
TACGAACAGCAAAGGAGCGCCGACCGCTGAGCATGTCCGACAATGTTGAC
GGTGATTGAAGTGGGAGGAGAAGGAGGACGCGGGTAGTCGCTTCCTGT
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protein sequence of jgi.p|Nanoce1779_2|609628

>mRNA_10080-protein ID=mRNA_10080-protein|Name=jgi.p|Nanoce1779_2|609628|organism=Nannochloropsis oceanica|type=polypeptide|length=142bp
MMENYGQHRRNADVTSSPDTVIYALFRRLRDALHPVPPSRPLPPRNRPPR
THLILILLLLLVFVLILVSNLSSLSHIQHRLQLDTRAGIGQTHVVVLLQW
TAAAAAVAFRSTFSVESAERDALLEAVVDLSFEKGAAAAAP*
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mRNA from alignment at scaffold_46:66081..66928+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10080 ID=mRNA_10080|Name=jgi.p|Nanoce1779_2|609628|organism=Nannochloropsis oceanica|type=mRNA|length=848bp|location=Sequence derived from alignment at scaffold_46:66081..66928+ (Nannochloropsis oceanica)
CCCTCCCTCCCTTTCTCCCTTCCTCCTTCGGGCCCCCACTCGGCACAGGC
AGGGTCGAGCTGGAGAGTGTTCCAGGCCAAGGTGGTGTAGGCGTCGTGAA
GGGATGATGATGATGAGGAGGAGGGGGATGCCGAGTCGATAGAGAGAGGG
ATGAGGTCCGGAAGGGGAAGGTAGAGGGACTGTGAAAGGGCGGGTGAGTT
CATGTGAGCGAGGGGATGGTGGCGTGAGGGAGAAGAAAGAGACAAGAAGC
GGAAAATGATGGAAAATTATGGACAGCACCGCCGCAATGCCGATGTCACA
TCCTCCCCAGACACAGTCATTTATGCACTCTTTCGTCGTCTCCGAGACGC
TCTTCATCCTGTTCCTCCCTCAAGGCCTCTTCCACCAAGAAACCGGCCTC
CCCGTACGCACCTCATTCTCATCCTCCTGCTGCTCCTCGTCTTCGTCCTC
ATTCTCGTTTCCAATCTCTCCTCCCTGTCCCATATACAGCACCGCTTGCA
GCTCGATACTCGTGCCGGCATAGGGCAGACTCACGTGGTAGTACTCTTGC
AGTGGACCGCCGCTGCAGCTGCTGTTGCCTTTCGCTCCACCTTTTCCGTC
GAGTCGGCGGAGCGTGACGCCCTTCTTGAGGCAGTAGTCGACTTGAGTTT
CGAGAAGGGAGCGGCGGCGGCGGCGCCGTGAAGATGGGAGGAGAAAGGTC
ATGACCGTTCCGGGGGGTTACGGTGTCCCGAAGGAAGGGGTCGGGCTACT
TACGAACAGCAAAGGAGCGCCGACCGCTGAGCATGTCCGACAATGTTGAC
GGTGATTGAAGTGGGAGGAGAAGGAGGACGCGGGTAGTCGCTTCCTGT
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Coding sequence (CDS) from alignment at scaffold_46:66081..66928+

>mRNA_10080 ID=mRNA_10080|Name=jgi.p|Nanoce1779_2|609628|organism=Nannochloropsis oceanica|type=CDS|length=426bp|location=Sequence derived from alignment at scaffold_46:66081..66928+ (Nannochloropsis oceanica)
ATGATGGAAAATTATGGACAGCACCGCCGCAATGCCGATGTCACATCCTC
CCCAGACACAGTCATTTATGCACTCTTTCGTCGTCTCCGAGACGCTCTTC
ATCCTGTTCCTCCCTCAAGGCCTCTTCCACCAAGAAACCGGCCTCCCCGT
ACGCACCTCATTCTCATCCTCCTGCTGCTCCTCGTCTTCGTCCTCATTCT
CGTTTCCAATCTCTCCTCCCTGTCCCATATACAGCACCGCTTGCAGCTCG
ATACTCGTGCCGGCATAGGGCAGACTCACGTGGTAGTACTCTTGCAGTGG
ACCGCCGCTGCAGCTGCTGTTGCCTTTCGCTCCACCTTTTCCGTCGAGTC
GGCGGAGCGTGACGCCCTTCTTGAGGCAGTAGTCGACTTGAGTTTCGAGA
AGGGAGCGGCGGCGGCGGCGCCGTGA
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Synonyms
Publications