jgi.p|Nanoce1779_2|575009, mRNA_1008 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575009
Unique NamemRNA_1008
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1883
Alignment locationscaffold_2:1001179..1003061 -

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Properties
Property NameValue
TranscriptId575095
TrackFilteredModels2
ProteinId575009
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1001179..1003061 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575009gene_1008Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575009mRNA_1008-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1008CDS_1008Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1008 ID=mRNA_1008|Name=jgi.p|Nanoce1779_2|575009|organism=Nannochloropsis oceanica|type=mRNA|length=1883bp
AGGCAATTATGTTGAGGCGTGGCTTGCTCCGACTGTCGTCCTCAGCCTCG
GCCAGGATGGGTTGGGGCACGCGCTTTGTCCCGGCATACGCCGCGGAGTT
TGCAACGCAGGCCGCCCCATCTTTTCATTATCAGGAGTTGTTTGACCTTA
CTCCCGACGAGGCCACCCCCTACCGCAAGCTTACGAGCGACTACGTCTCT
ACATTCAACATGAATGGACAGGAGTTCTTGAAGGTGGAGCCTGAAGCATT
GCGGTTGCTAGCGTCGCAGGCCATGGTGGACATAGCCCACTTGCTTCGCC
CGGGCCACCTCGCGCAGCTAGCCAAGATTCTTAAGGACCCCGAGGCGTCG
GCCAACGACCGCTTCGTCGCGCTGGAGCTGCTTAAGAATGCCAACATTGC
ATCTGGCTTGATTCTGCCCGGATGTCAAGACACCGGCACGGGCATCGTGA
TTGGAAAGCGCGGCATGCAAGTCTTGACTGACGGGCTGGATGAGGCGCAT
CTGAGCAGGGGAGTTTACGACACCTACACCAGGACCAACCTTCGTTATTC
CCAAGTGGCACCCATGGATATGTTTCTCGAGAAAAATACCAAGACAAACT
TACCCGCACAGATTGATTTGTACGCGACTAAGGGTGACGCATACAATTTT
CTCTTCATGGCTAAGGGAGGGGGATCGGCTAACAAGACCTTTCTGTTCCA
GCAGACCAAGGCCTTACTTAACCCGACGGGGCTAATGAAATTCATGGACG
AGAAGATCAAGACCTTGGGAACCGCTGCTTGTCCTCCTTATCATTTGGCA
GTGGTAATCGGGGGTTTGTCGGCGGAGTTGACTCTCAAGACAGTAAAGCT
TGCGTCGACGAAGTACCTTGATCACTTGCCCACGTCCGGGAATGAGCACG
GGCGGGCTTTCCGGGATTTGGAGTGGGAGGAAAAAATCCACGGCTTGACG
CAACGGATGGGCATCGGCGCTCAATTCGGTGGGAAGTATTTCTGCCATGA
CGTGCGTGTAATTCGCTTGCCCAGGCATGGAGCATCGTGCCCTGTTGGAA
TTGGGGTGTCGTGCTCGGCTGATCGGCAGGCTAAGGGGAAGATAACGAAG
GAGGGGGTATTCTTGGAGCAGCTGGAGAGGGATGTAGGGCAGTACTTGCC
GGAGGTGGATGATAAGACTTTGGAGGGAGCGGAGGTGGTGAAGGTGGATT
TGAATAGACCCATGGCGGAGATCAGGGCGACATTGAGTAAGTATCCGATT
AAGACGCGGCTGGCGTTATCGGGGACACTGGTCGTTGCGCGGGATATAGC
CCATGCAAAATTGTTGGAGAGGATTGAGAGTGGAGAGGGGCTGCCGGAAT
ACGTGAAGGATCATATAATTTATTATGCGGGGCCGGCGAAGACACCGGAG
GGGTATGCGAGTGGGTCGTTTGGGCCGACAACTGCTGGGAGGATGGACAG
CTACGTGGATACATTTATGGAGAATGGTGGGAGTTTCATCACGTTGGCGA
AGGGGAATAGAAGTAAAGCAGTGACGAGGGCCTGTAAGACGCATGGTGGG
TTTTATTTAGGGTCAATCGGGGGCCCCGCGGCGATCTTAGCGCAGAATAA
CATTAAAAAGGTGGAGGTGTTAGAATATCCCGAACTCGGGATGGAAGCGA
TTTGGAAGATTCAGGTGGTGGACTTTCCGGCCTTTGTGGTATGTGATGAT
AAAGGAAATGACTTTTTCTCGAAGTGGCAGGTGTAGGGTTTTTGAGGGAG
GTGAGAGAGAAAGAGGGAGAGAAGGAAGGAAAGGCAATTTTTGGTAGGGG
GGAAGAGCGCACGGTAAATGAATCTGTTTGTTGATTTCCCGTGGAAGGCG
AATAGAAATAAGAAATAGGAAGCGAGGCCAGTG
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protein sequence of jgi.p|Nanoce1779_2|575009

>mRNA_1008-protein ID=mRNA_1008-protein|Name=jgi.p|Nanoce1779_2|575009|organism=Nannochloropsis oceanica|type=polypeptide|length=576bp
MLRRGLLRLSSSASARMGWGTRFVPAYAAEFATQAAPSFHYQELFDLTPD
EATPYRKLTSDYVSTFNMNGQEFLKVEPEALRLLASQAMVDIAHLLRPGH
LAQLAKILKDPEASANDRFVALELLKNANIASGLILPGCQDTGTGIVIGK
RGMQVLTDGLDEAHLSRGVYDTYTRTNLRYSQVAPMDMFLEKNTKTNLPA
QIDLYATKGDAYNFLFMAKGGGSANKTFLFQQTKALLNPTGLMKFMDEKI
KTLGTAACPPYHLAVVIGGLSAELTLKTVKLASTKYLDHLPTSGNEHGRA
FRDLEWEEKIHGLTQRMGIGAQFGGKYFCHDVRVIRLPRHGASCPVGIGV
SCSADRQAKGKITKEGVFLEQLERDVGQYLPEVDDKTLEGAEVVKVDLNR
PMAEIRATLSKYPIKTRLALSGTLVVARDIAHAKLLERIESGEGLPEYVK
DHIIYYAGPAKTPEGYASGSFGPTTAGRMDSYVDTFMENGGSFITLAKGN
RSKAVTRACKTHGGFYLGSIGGPAAILAQNNIKKVEVLEYPELGMEAIWK
IQVVDFPAFVVCDDKGNDFFSKWQV*
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mRNA from alignment at scaffold_2:1001179..1003061-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1008 ID=mRNA_1008|Name=jgi.p|Nanoce1779_2|575009|organism=Nannochloropsis oceanica|type=mRNA|length=1883bp|location=Sequence derived from alignment at scaffold_2:1001179..1003061- (Nannochloropsis oceanica)
AGGCAATTATGTTGAGGCGTGGCTTGCTCCGACTGTCGTCCTCAGCCTCG
GCCAGGATGGGTTGGGGCACGCGCTTTGTCCCGGCATACGCCGCGGAGTT
TGCAACGCAGGCCGCCCCATCTTTTCATTATCAGGAGTTGTTTGACCTTA
CTCCCGACGAGGCCACCCCCTACCGCAAGCTTACGAGCGACTACGTCTCT
ACATTCAACATGAATGGACAGGAGTTCTTGAAGGTGGAGCCTGAAGCATT
GCGGTTGCTAGCGTCGCAGGCCATGGTGGACATAGCCCACTTGCTTCGCC
CGGGCCACCTCGCGCAGCTAGCCAAGATTCTTAAGGACCCCGAGGCGTCG
GCCAACGACCGCTTCGTCGCGCTGGAGCTGCTTAAGAATGCCAACATTGC
ATCTGGCTTGATTCTGCCCGGATGTCAAGACACCGGCACGGGCATCGTGA
TTGGAAAGCGCGGCATGCAAGTCTTGACTGACGGGCTGGATGAGGCGCAT
CTGAGCAGGGGAGTTTACGACACCTACACCAGGACCAACCTTCGTTATTC
CCAAGTGGCACCCATGGATATGTTTCTCGAGAAAAATACCAAGACAAACT
TACCCGCACAGATTGATTTGTACGCGACTAAGGGTGACGCATACAATTTT
CTCTTCATGGCTAAGGGAGGGGGATCGGCTAACAAGACCTTTCTGTTCCA
GCAGACCAAGGCCTTACTTAACCCGACGGGGCTAATGAAATTCATGGACG
AGAAGATCAAGACCTTGGGAACCGCTGCTTGTCCTCCTTATCATTTGGCA
GTGGTAATCGGGGGTTTGTCGGCGGAGTTGACTCTCAAGACAGTAAAGCT
TGCGTCGACGAAGTACCTTGATCACTTGCCCACGTCCGGGAATGAGCACG
GGCGGGCTTTCCGGGATTTGGAGTGGGAGGAAAAAATCCACGGCTTGACG
CAACGGATGGGCATCGGCGCTCAATTCGGTGGGAAGTATTTCTGCCATGA
CGTGCGTGTAATTCGCTTGCCCAGGCATGGAGCATCGTGCCCTGTTGGAA
TTGGGGTGTCGTGCTCGGCTGATCGGCAGGCTAAGGGGAAGATAACGAAG
GAGGGGGTATTCTTGGAGCAGCTGGAGAGGGATGTAGGGCAGTACTTGCC
GGAGGTGGATGATAAGACTTTGGAGGGAGCGGAGGTGGTGAAGGTGGATT
TGAATAGACCCATGGCGGAGATCAGGGCGACATTGAGTAAGTATCCGATT
AAGACGCGGCTGGCGTTATCGGGGACACTGGTCGTTGCGCGGGATATAGC
CCATGCAAAATTGTTGGAGAGGATTGAGAGTGGAGAGGGGCTGCCGGAAT
ACGTGAAGGATCATATAATTTATTATGCGGGGCCGGCGAAGACACCGGAG
GGGTATGCGAGTGGGTCGTTTGGGCCGACAACTGCTGGGAGGATGGACAG
CTACGTGGATACATTTATGGAGAATGGTGGGAGTTTCATCACGTTGGCGA
AGGGGAATAGAAGTAAAGCAGTGACGAGGGCCTGTAAGACGCATGGTGGG
TTTTATTTAGGGTCAATCGGGGGCCCCGCGGCGATCTTAGCGCAGAATAA
CATTAAAAAGGTGGAGGTGTTAGAATATCCCGAACTCGGGATGGAAGCGA
TTTGGAAGATTCAGGTGGTGGACTTTCCGGCCTTTGTGGTATGTGATGAT
AAAGGAAATGACTTTTTCTCGAAGTGGCAGGTGTAGGGTTTTTGAGGGAG
GTGAGAGAGAAAGAGGGAGAGAAGGAAGGAAAGGCAATTTTTGGTAGGGG
GGAAGAGCGCACGGTAAATGAATCTGTTTGTTGATTTCCCGTGGAAGGCG
AATAGAAATAAGAAATAGGAAGCGAGGCCAGTG
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Coding sequence (CDS) from alignment at scaffold_2:1001179..1003061-

>mRNA_1008 ID=mRNA_1008|Name=jgi.p|Nanoce1779_2|575009|organism=Nannochloropsis oceanica|type=CDS|length=1728bp|location=Sequence derived from alignment at scaffold_2:1001179..1003061- (Nannochloropsis oceanica)
ATGTTGAGGCGTGGCTTGCTCCGACTGTCGTCCTCAGCCTCGGCCAGGAT
GGGTTGGGGCACGCGCTTTGTCCCGGCATACGCCGCGGAGTTTGCAACGC
AGGCCGCCCCATCTTTTCATTATCAGGAGTTGTTTGACCTTACTCCCGAC
GAGGCCACCCCCTACCGCAAGCTTACGAGCGACTACGTCTCTACATTCAA
CATGAATGGACAGGAGTTCTTGAAGGTGGAGCCTGAAGCATTGCGGTTGC
TAGCGTCGCAGGCCATGGTGGACATAGCCCACTTGCTTCGCCCGGGCCAC
CTCGCGCAGCTAGCCAAGATTCTTAAGGACCCCGAGGCGTCGGCCAACGA
CCGCTTCGTCGCGCTGGAGCTGCTTAAGAATGCCAACATTGCATCTGGCT
TGATTCTGCCCGGATGTCAAGACACCGGCACGGGCATCGTGATTGGAAAG
CGCGGCATGCAAGTCTTGACTGACGGGCTGGATGAGGCGCATCTGAGCAG
GGGAGTTTACGACACCTACACCAGGACCAACCTTCGTTATTCCCAAGTGG
CACCCATGGATATGTTTCTCGAGAAAAATACCAAGACAAACTTACCCGCA
CAGATTGATTTGTACGCGACTAAGGGTGACGCATACAATTTTCTCTTCAT
GGCTAAGGGAGGGGGATCGGCTAACAAGACCTTTCTGTTCCAGCAGACCA
AGGCCTTACTTAACCCGACGGGGCTAATGAAATTCATGGACGAGAAGATC
AAGACCTTGGGAACCGCTGCTTGTCCTCCTTATCATTTGGCAGTGGTAAT
CGGGGGTTTGTCGGCGGAGTTGACTCTCAAGACAGTAAAGCTTGCGTCGA
CGAAGTACCTTGATCACTTGCCCACGTCCGGGAATGAGCACGGGCGGGCT
TTCCGGGATTTGGAGTGGGAGGAAAAAATCCACGGCTTGACGCAACGGAT
GGGCATCGGCGCTCAATTCGGTGGGAAGTATTTCTGCCATGACGTGCGTG
TAATTCGCTTGCCCAGGCATGGAGCATCGTGCCCTGTTGGAATTGGGGTG
TCGTGCTCGGCTGATCGGCAGGCTAAGGGGAAGATAACGAAGGAGGGGGT
ATTCTTGGAGCAGCTGGAGAGGGATGTAGGGCAGTACTTGCCGGAGGTGG
ATGATAAGACTTTGGAGGGAGCGGAGGTGGTGAAGGTGGATTTGAATAGA
CCCATGGCGGAGATCAGGGCGACATTGAGTAAGTATCCGATTAAGACGCG
GCTGGCGTTATCGGGGACACTGGTCGTTGCGCGGGATATAGCCCATGCAA
AATTGTTGGAGAGGATTGAGAGTGGAGAGGGGCTGCCGGAATACGTGAAG
GATCATATAATTTATTATGCGGGGCCGGCGAAGACACCGGAGGGGTATGC
GAGTGGGTCGTTTGGGCCGACAACTGCTGGGAGGATGGACAGCTACGTGG
ATACATTTATGGAGAATGGTGGGAGTTTCATCACGTTGGCGAAGGGGAAT
AGAAGTAAAGCAGTGACGAGGGCCTGTAAGACGCATGGTGGGTTTTATTT
AGGGTCAATCGGGGGCCCCGCGGCGATCTTAGCGCAGAATAACATTAAAA
AGGTGGAGGTGTTAGAATATCCCGAACTCGGGATGGAAGCGATTTGGAAG
ATTCAGGTGGTGGACTTTCCGGCCTTTGTGGTATGTGATGATAAAGGAAA
TGACTTTTTCTCGAAGTGGCAGGTGTAG
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Synonyms
Publications