jgi.p|Nanoce1779_2|609627, mRNA_10079 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609627
Unique NamemRNA_10079
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1442
Alignment locationscaffold_46:64528..66155 -

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Properties
Property NameValue
TranscriptId609713
TrackFilteredModels2
ProteinId609627
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_46supercontigscaffold_46:64528..66155 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609627gene_10079Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609627mRNA_10079-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10079CDS_10079Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10079 ID=mRNA_10079|Name=jgi.p|Nanoce1779_2|609627|organism=Nannochloropsis oceanica|type=mRNA|length=1442bp
CTGGAACACTCTCCAGCTCGACCCTGCCTGTGCCGAGTGGGGGCCCGAAG
GAGGAAGGGAGAAAGGGAGGGAGGGAGGATGGGGGAGCACGGCGAAAGGT
TTGTTCGAGCTGTTACTAGCGATAAAAAGGCAGGTGACTGAATATCATGT
GAAGAACGTGCAGGGCTTTGCTTTGGAGGATAGCGTACGCTTCGAGCTGG
AGATGATGGCCGGCCTCCCTGGCTTGGAGCTTCTGACCCGCACAACTTAC
GCCGGCCGCGAGATCCACGTCCTCCTCCCGCTCTGGGCTTCCCCCTCCTC
TTCCTCCACTTCCTCCCCTTCCTTGCTCTCTGATGATGATAAGGATGAGG
ACGAGGAGGAGGAGGACGACGAGGGCCGGGACGCCTCGAATGCAATAAGT
CAAACGACGGACAAGACTCCTGTCGGTGGCCTTGACGCTCCGCCGCCCTC
CTCCTCTTCCTCCTCCTGCCCACCCTTCGGCCGGCACCTACAACTCCACC
TCACCTACAGCCTTGACCCCCTTGCCACGACTGTCTTCACAGGCAGCAAT
AGCAGCAGCAGTAGTGGCAGTAGCAGCAGAACCACCACCACCAGCAGCAA
AGTCCTCCTCCGCCCAGCTCGCACCACCGACCCCTCCCTGGCCCTACCCC
TCACCCGCGAGGCCGTCTGTCATTCCTCCCTCCCCTCCCCCTCCCAAGAC
GATATGCTCATCCTCGACTACCTGAACAAGGTACGAAACCTCTTCCTCGT
TCCCTTCCTCAAGCGTCAGAGCTTCATTCGGGCGCTAATGGCGAACTTTA
CGATGATAGAATTTGATGCCTGTGAGTTTGCTTCGGCGACCATCCTCCTT
CGGATTCACTTGCCCAGGGTGGGGAGGAGGAAGAAAAAGAAGAAGAAGGG
GAAGGAGAAGGACGACGAAGGGGGGGGTGAAAGAGAAGAAAAGAGGCCGG
ATGGGGAGGAGCATGAGGAGGAGGGCGGGGAGGAAGAGGACGAGGAGGAA
AACGAGGAGGAGCACTCTTTTTTGCTTCATTTTACGTTCCCCTGGGATTT
TCCAGCGGACAGGTCTCCGCCCGAGGTGCTGTTTTCGGACGTGGCGAGGG
CAAGGGACAGAATTCGTGTGGACCGAGAGAGGGGTGAGTGGAGGTATAGT
CCGCGATGGGAGGGGAAGAGGATGGCGGAGGCGCTGGTGGAGCATGCGAA
GGCCGTCATTGCCGAGGATTATGGCAGGATGATGGGCTTCACCATGGCGA
TGCATTAAAAGAGGATGGGGGATAGAGGAGAAGGAGGAGGAGGAGAAGGA
GGAGGAGGATTGACACAGGAACGTGTATATAGAGAGCGAGGAGTCCGTAA
TTCAGTCGGCAGGATTCAGGATAAAGGCCGATCCTTCTAGTCCCTCTGCT
GCCCTCTGAGGGGTACAAGAATTAAAAATAAAAGGAGCAGTA
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protein sequence of jgi.p|Nanoce1779_2|609627

>mRNA_10079-protein ID=mRNA_10079-protein|Name=jgi.p|Nanoce1779_2|609627|organism=Nannochloropsis oceanica|type=polypeptide|length=352bp
MMAGLPGLELLTRTTYAGREIHVLLPLWASPSSSSTSSPSLLSDDDKDED
EEEEDDEGRDASNAISQTTDKTPVGGLDAPPPSSSSSSCPPFGRHLQLHL
TYSLDPLATTVFTGSNSSSSSGSSSRTTTTSSKVLLRPARTTDPSLALPL
TREAVCHSSLPSPSQDDMLILDYLNKVRNLFLVPFLKRQSFIRALMANFT
MIEFDACEFASATILLRIHLPRVGRRKKKKKKGKEKDDEGGGEREEKRPD
GEEHEEEGGEEEDEEENEEEHSFLLHFTFPWDFPADRSPPEVLFSDVARA
RDRIRVDRERGEWRYSPRWEGKRMAEALVEHAKAVIAEDYGRMMGFTMAM
H*
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mRNA from alignment at scaffold_46:64528..66155-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10079 ID=mRNA_10079|Name=jgi.p|Nanoce1779_2|609627|organism=Nannochloropsis oceanica|type=mRNA|length=1628bp|location=Sequence derived from alignment at scaffold_46:64528..66155- (Nannochloropsis oceanica)
CTGGAACACTCTCCAGCTCGACCCTGCCTGTGCCGAGTGGGGGCCCGAAG
GAGGAAGGGAGAAAGGGAGGGAGGGAGGATGGGGGAGCACGGCGAAAGGT
TTGTTCGAGCTGTTACTAGCGATAAAAAGGCAGGTGACTGAATATCATGT
GAAGAACGTGCAGGGCTTTGCTTTGGAGGATAGCGTACGCTTCGAGCTGG
AGATGATGGTACGTGAAGAGAGAGGGAGGGAGGCAGGAAGGAAGGAAGGG
AGGGAGGGAGGGAGGGGATCAAAAGGCTCATGGGCATGCCGGCATCTAAA
CTGCGGCCATCTTCTCTCCTTGATCGTCACACCGCCCTACCACCAACATT
TACCTCTTTCCTTCCCTTCCTCGCCTCCTCCTCTCCTTCCATAGGCCGGC
CTCCCTGGCTTGGAGCTTCTGACCCGCACAACTTACGCCGGCCGCGAGAT
CCACGTCCTCCTCCCGCTCTGGGCTTCCCCCTCCTCTTCCTCCACTTCCT
CCCCTTCCTTGCTCTCTGATGATGATAAGGATGAGGACGAGGAGGAGGAG
GACGACGAGGGCCGGGACGCCTCGAATGCAATAAGTCAAACGACGGACAA
GACTCCTGTCGGTGGCCTTGACGCTCCGCCGCCCTCCTCCTCTTCCTCCT
CCTGCCCACCCTTCGGCCGGCACCTACAACTCCACCTCACCTACAGCCTT
GACCCCCTTGCCACGACTGTCTTCACAGGCAGCAATAGCAGCAGCAGTAG
TGGCAGTAGCAGCAGAACCACCACCACCAGCAGCAAAGTCCTCCTCCGCC
CAGCTCGCACCACCGACCCCTCCCTGGCCCTACCCCTCACCCGCGAGGCC
GTCTGTCATTCCTCCCTCCCCTCCCCCTCCCAAGACGATATGCTCATCCT
CGACTACCTGAACAAGGTACGAAACCTCTTCCTCGTTCCCTTCCTCAAGC
GTCAGAGCTTCATTCGGGCGCTAATGGCGAACTTTACGATGATAGAATTT
GATGCCTGTGAGTTTGCTTCGGCGACCATCCTCCTTCGGATTCACTTGCC
CAGGGTGGGGAGGAGGAAGAAAAAGAAGAAGAAGGGGAAGGAGAAGGACG
ACGAAGGGGGGGGTGAAAGAGAAGAAAAGAGGCCGGATGGGGAGGAGCAT
GAGGAGGAGGGCGGGGAGGAAGAGGACGAGGAGGAAAACGAGGAGGAGCA
CTCTTTTTTGCTTCATTTTACGTTCCCCTGGGATTTTCCAGCGGACAGGT
CTCCGCCCGAGGTGCTGTTTTCGGACGTGGCGAGGGCAAGGGACAGAATT
CGTGTGGACCGAGAGAGGGGTGAGTGGAGGTATAGTCCGCGATGGGAGGG
GAAGAGGATGGCGGAGGCGCTGGTGGAGCATGCGAAGGCCGTCATTGCCG
AGGATTATGGCAGGATGATGGGCTTCACCATGGCGATGCATTAAAAGAGG
ATGGGGGATAGAGGAGAAGGAGGAGGAGGAGAAGGAGGAGGAGGATTGAC
ACAGGAACGTGTATATAGAGAGCGAGGAGTCCGTAATTCAGTCGGCAGGA
TTCAGGATAAAGGCCGATCCTTCTAGTCCCTCTGCTGCCCTCTGAGGGGT
ACAAGAATTAAAAATAAAAGGAGCAGTA
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Coding sequence (CDS) from alignment at scaffold_46:64528..66155-

>mRNA_10079 ID=mRNA_10079|Name=jgi.p|Nanoce1779_2|609627|organism=Nannochloropsis oceanica|type=CDS|length=2112bp|location=Sequence derived from alignment at scaffold_46:64528..66155- (Nannochloropsis oceanica)
GCCGGCCTCCCTGGCTTGGAGCTTCTGACCCGCACAACTTACGCCGGCCG
CGAGATCCACGTCCTCCTCCCGCTCTGGGCTTCCCCCTCCTCTTCCTCCA
CTTCCTCCCCTTCCTTGCTCTCTGATGATGATAAGGATGAGGACGAGGAG
GAGGAGGACGACGAGGGCCGGGACGCCTCGAATGCAATAAGTCAAACGAC
GGACAAGACTCCTGTCGGTGGCCTTGACGCTCCGCCGCCCTCCTCCTCTT
CCTCCTCCTGCCCACCCTTCGGCCGGCACCTACAACTCCACCTCACCTAC
AGCCTTGACCCCCTTGCCACGACTGTCTTCACAGGCAGCAATAGCAGCAG
CAGTAGTGGCAGTAGCAGCAGAACCACCACCACCAGCAGCAAAGTCCTCC
TCCGCCCAGCTCGCACCACCGACCCCTCCCTGGCCCTACCCCTCACCCGC
GAGGCCGTCTGTCATTCCTCCCTCCCCTCCCCCTCCCAAGACGATATGCT
CATCCTCGACTACCTGAACAAGGTACGAAACCTCTTCCTCGTTCCCTTCC
TCAAGCGTCAGAGCTTCATTCGGGCGCTAATGGCGAACTTTACGATGATA
GAATTTGATGCCTGTGAGTTTGCTTCGGCGACCATCCTCCTTCGGATTCA
CTTGCCCAGGGTGGGGAGGAGGAAGAAAAAGAAGAAGAAGGGGAAGGAGA
AGGACGACGAAGGGGGGGGTGAAAGAGAAGAAAAGAGGCCGGATGGGGAG
GAGCATGAGGAGGAGGGCGGGGAGGAAGAGGACGAGGAGGAAAACGAGGA
GGAGCACTCTTTTTTGCTTCATTTTACGTTCCCCTGGGATTTTCCAGCGG
ACAGGTCTCCGCCCGAGGTGCTGTTTTCGGACGTGGCGAGGGCAAGGGAC
AGAATTCGTGTGGACCGAGAGAGGGGTGAGTGGAGGTATAGTCCGCGATG
GGAGGGGAAGAGGATGGCGGAGGCGCTGGTGGAGCATGCGAAGGCCGTCA
TTGCCGAGGATTATGGCAGGATGATGGGCTTCACCATGGCGATGCATTAA
ATGATGGCCGGCCTCCCTGGCTTGGAGCTTCTGACCCGCACAACTTACGC
CGGCCGCGAGATCCACGTCCTCCTCCCGCTCTGGGCTTCCCCCTCCTCTT
CCTCCACTTCCTCCCCTTCCTTGCTCTCTGATGATGATAAGGATGAGGAC
GAGGAGGAGGAGGACGACGAGGGCCGGGACGCCTCGAATGCAATAAGTCA
AACGACGGACAAGACTCCTGTCGGTGGCCTTGACGCTCCGCCGCCCTCCT
CCTCTTCCTCCTCCTGCCCACCCTTCGGCCGGCACCTACAACTCCACCTC
ACCTACAGCCTTGACCCCCTTGCCACGACTGTCTTCACAGGCAGCAATAG
CAGCAGCAGTAGTGGCAGTAGCAGCAGAACCACCACCACCAGCAGCAAAG
TCCTCCTCCGCCCAGCTCGCACCACCGACCCCTCCCTGGCCCTACCCCTC
ACCCGCGAGGCCGTCTGTCATTCCTCCCTCCCCTCCCCCTCCCAAGACGA
TATGCTCATCCTCGACTACCTGAACAAGGTACGAAACCTCTTCCTCGTTC
CCTTCCTCAAGCGTCAGAGCTTCATTCGGGCGCTAATGGCGAACTTTACG
ATGATAGAATTTGATGCCTGTGAGTTTGCTTCGGCGACCATCCTCCTTCG
GATTCACTTGCCCAGGGTGGGGAGGAGGAAGAAAAAGAAGAAGAAGGGGA
AGGAGAAGGACGACGAAGGGGGGGGTGAAAGAGAAGAAAAGAGGCCGGAT
GGGGAGGAGCATGAGGAGGAGGGCGGGGAGGAAGAGGACGAGGAGGAAAA
CGAGGAGGAGCACTCTTTTTTGCTTCATTTTACGTTCCCCTGGGATTTTC
CAGCGGACAGGTCTCCGCCCGAGGTGCTGTTTTCGGACGTGGCGAGGGCA
AGGGACAGAATTCGTGTGGACCGAGAGAGGGGTGAGTGGAGGTATAGTCC
GCGATGGGAGGGGAAGAGGATGGCGGAGGCGCTGGTGGAGCATGCGAAGG
CCGTCATTGCCGAGGATTATGGCAGGATGATGGGCTTCACCATGGCGATG
CATTAAATGATG
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Synonyms
Publications