jgi.p|Nanoce1779_2|569587, mRNA_10078 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|569587
Unique Name	mRNA_10078
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	639
Alignment location	scaffold_46:63072..64436 +

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Properties


Property Name	Value
TranscriptId	569673
Track	FilteredModels2
ProteinId	569587

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_46	supercontig	scaffold_46:63072..64436 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|569587	gene_10078	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|569587	mRNA_10078-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10078	CDS_10078	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_46:63072..64436+
coding sequence from alignment at scaffold_46:63072..64436+

mRNA sequence

>mRNA_10078 ID=mRNA_10078|Name=jgi.p|Nanoce1779_2|569587|organism=Nannochloropsis oceanica|type=mRNA|length=639bp
ATGCCGGTGCTTTATGATAAGGATGGTGTGGAGACCATGGGAGCCATGGA
GGGCACCAAGCCATTGCAGTGGCCCAACAAGGTCCTGTTTTCCCAGAAGC
TCAAGTGGGCACCTTCATCTGCAGGGCAGGACATCAAGGAAAGCTTCCGT
CGCCGTCTCCTCCCAGGTATCGAAGTCCGCTACATCACCGAGCCCTCCCA
CGTCTTGAAAGGGCAGTACGGCGTGTACGCTACCCGTGAATTCGCGCCCT
TCGACGTCATAGGGGAGTATGTGGGCCGCGTTGTCCCTCCCAAGGTGTGT
GGGGAGTACGTGGCGACCATTGACTGGGAGGACTGCCGCTTGTCGGACGG
GGCTGGACACCTGTGGGGGGTCGACTCGGCCGTGTACGGAAATGAGGTGC
GGATGATCAACCATTACCACCGGATTAGCCCCGTGCCCAACGTGAAGTTC
GTCACGTCGTACATAGCCGAGCTCCCACACATCCTTGTGGTGGTCGTGCG
GCCGATTGCAAGAGGCGCCGAGGTCCTGATTGACTACGGACCTAACTACT
GGTGTGGGAAGTACCACGCACCACCCGCAGATCCGCCGGGGATCGACGAC
CCGCCCGAGGAGAGAGTGATGGAGGTGGAAGAGGAGTAA

protein sequence of jgi.p|Nanoce1779_2|569587

>mRNA_10078-protein ID=mRNA_10078-protein|Name=jgi.p|Nanoce1779_2|569587|organism=Nannochloropsis oceanica|type=polypeptide|length=213bp
MPVLYDKDGVETMGAMEGTKPLQWPNKVLFSQKLKWAPSSAGQDIKESFR
RRLLPGIEVRYITEPSHVLKGQYGVYATREFAPFDVIGEYVGRVVPPKVC
GEYVATIDWEDCRLSDGAGHLWGVDSAVYGNEVRMINHYHRISPVPNVKF
VTSYIAELPHILVVVVRPIARGAEVLIDYGPNYWCGKYHAPPADPPGIDD
PPEERVMEVEEE*

mRNA from alignment at scaffold_46:63072..64436+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10078 ID=mRNA_10078|Name=jgi.p|Nanoce1779_2|569587|organism=Nannochloropsis oceanica|type=mRNA|length=1365bp|location=Sequence derived from alignment at scaffold_46:63072..64436+ (Nannochloropsis oceanica)
ATGCCGGTGCTTTATGATAAGGATGGTGTGGAGACCATGGGAGCCATGGA
GGGCACCAAGCCATTGCAGTGGCCCAACAAGGTACGTGTGTGTGTGTGTG
TGTGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTATGTATGTGTGTGTGTGTATGTGTGTGTGTATGTGTGTG
TCTGTATGTCTGTCTGTCTGTCTGTCTGTCCATATGCAATGTCGCCGTAC
TGGACGATTTGTTCACCCCTCTCCGCCCTCCATGCTTCCTTCCCTTCCTC
TATAGGTCCTGTTTTCCCAGAAGCTCAAGTGGGCACCTTCATCTGCAGGG
CAGGACATCAAGGAAAGCTTCCGTCGCCGTCTCCTCCCAGGTATCGAAGT
CCGCTACATCACCGAGCCCTCCCACGTCTTGAAAGGGCAGTACGGTACGT
GTATAGTTTTCGCGCGGATATGAAAGGCACAGAGACTACGAGGAAAATAG
TTTATTTGTCAATTTATGCAGACTAATGTCCTGACATTCGATAACATATA
GACCCAATGTCTGCCATCCTATGTTGTCAATTTTATTCACGAAGAGATTA
AACGCGTCGGCATGGATCCTCTCAAATCCTCAGCTCTCCCCTTCCTCGTC
CCCCCCCCACACACAAGGCGTGTACGCTACCCGTGAATTCGCGCCCTTCG
ACGTCATAGGGGAGTATGTGGGCCGCGTTGTCCCTCCCAAGGTGTGTGGG
GAGTACGTGGCGACCATTGACTGGGAGGACTGCCGCTTGTCGGACGGGGC
TGGACACCTGTGGGGGGTCGACTCGGCCGTGTACGGAAGTGAGTGACGGA
GTGAGAGCAGGGTGCAGGGGAGCATGGACAAGATGTGCGGGCAAAATAGT
TTCATTTGGCCATCGATTTCGGATACACAATGATGCAGTTACCTACTTTC
CTCCTTCCCCCCCTTTTGTGCCCTCCAACCCACCCTCAGATGAGGTGCGG
ATGATCAACCATTACCACCGGATTAGCCCCGTGCCCAACGTGAAGTTCGT
CACGTCGTACATAGCCGAGCTCCCACACATCCTTGTGGTGGTCGTGCGGC
CGATTGCAAGAGGCGCCGAGGTCCTGATTGACTACGGGTGAGTGAGTAAA
TGACTGTGACGGGGTGTATGTGTAGTACCTGTAGTACCACATACAGTATG
TAGGAGACCGAAGTCTAATTGATCCCTCTGGCCCACTTTCTTGTGCTCGC
CTTTCCTTCCCCTAGACCTAACTACTGGTGTGGGAAGTACCACGCACCAC
CCGCAGATCCGCCGGGGATCGACGACCCGCCCGAGGAGAGAGTGATGGAG
GTGGAAGAGGAGTAA

Coding sequence (CDS) from alignment at scaffold_46:63072..64436+

>mRNA_10078 ID=mRNA_10078|Name=jgi.p|Nanoce1779_2|569587|organism=Nannochloropsis oceanica|type=CDS|length=3195bp|location=Sequence derived from alignment at scaffold_46:63072..64436+ (Nannochloropsis oceanica)
ATGCCGGTGCTTTATGATAAGGATGGTGTGGAGACCATGGGAGCCATGGA
GGGCACCAAGCCATTGCAGTGGCCCAACAAGGTCCTGTTTTCCCAGAAGC
TCAAGTGGGCACCTTCATCTGCAGGGCAGGACATCAAGGAAAGCTTCCGT
CGCCGTCTCCTCCCAGGTATCGAAGTCCGCTACATCACCGAGCCCTCCCA
CGTCTTGAAAGGGCAGTACGGCGTGTACGCTACCCGTGAATTCGCGCCCT
TCGACGTCATAGGGGAGTATGTGGGCCGCGTTGTCCCTCCCAAGGTGTGT
GGGGAGTACGTGGCGACCATTGACTGGGAGGACTGCCGCTTGTCGGACGG
GGCTGGACACCTGTGGGGGGTCGACTCGGCCGTGTACGGAAATGAGGTGC
GGATGATCAACCATTACCACCGGATTAGCCCCGTGCCCAACGTGAAGTTC
GTCACGTCGTACATAGCCGAGCTCCCACACATCCTTGTGGTGGTCGTGCG
GCCGATTGCAAGAGGCGCCGAGGTCCTGATTGACTACGGACCTAACTACT
GGTGTGGGAAGTACCACGCACCACCCGCAGATCCGCCGGGGATCGACGAC
CCGCCCGAGGAGAGAGTGATGGAGGTGGAAGAGGAGTAAATGCCGGTGCT
TTATGATAAGGATGGTGTGGAGACCATGGGAGCCATGGAGGGCACCAAGC
CATTGCAGTGGCCCAACAAGGTCCTGTTTTCCCAGAAGCTCAAGTGGGCA
CCTTCATCTGCAGGGCAGGACATCAAGGAAAGCTTCCGTCGCCGTCTCCT
CCCAGGTATCGAAGTCCGCTACATCACCGAGCCCTCCCACGTCTTGAAAG
GGCAGTACGGCGTGTACGCTACCCGTGAATTCGCGCCCTTCGACGTCATA
GGGGAGTATGTGGGCCGCGTTGTCCCTCCCAAGGTGTGTGGGGAGTACGT
GGCGACCATTGACTGGGAGGACTGCCGCTTGTCGGACGGGGCTGGACACC
TGTGGGGGGTCGACTCGGCCGTGTACGGAAATGAGGTGCGGATGATCAAC
CATTACCACCGGATTAGCCCCGTGCCCAACGTGAAGTTCGTCACGTCGTA
CATAGCCGAGCTCCCACACATCCTTGTGGTGGTCGTGCGGCCGATTGCAA
GAGGCGCCGAGGTCCTGATTGACTACGGACCTAACTACTGGTGTGGGAAG
TACCACGCACCACCCGCAGATCCGCCGGGGATCGACGACCCGCCCGAGGA
GAGAGTGATGGAGGTGGAAGAGGAGTAAATGCCGGTGCTTTATGATAAGG
ATGGTGTGGAGACCATGGGAGCCATGGAGGGCACCAAGCCATTGCAGTGG
CCCAACAAGGTCCTGTTTTCCCAGAAGCTCAAGTGGGCACCTTCATCTGC
AGGGCAGGACATCAAGGAAAGCTTCCGTCGCCGTCTCCTCCCAGGTATCG
AAGTCCGCTACATCACCGAGCCCTCCCACGTCTTGAAAGGGCAGTACGGC
GTGTACGCTACCCGTGAATTCGCGCCCTTCGACGTCATAGGGGAGTATGT
GGGCCGCGTTGTCCCTCCCAAGGTGTGTGGGGAGTACGTGGCGACCATTG
ACTGGGAGGACTGCCGCTTGTCGGACGGGGCTGGACACCTGTGGGGGGTC
GACTCGGCCGTGTACGGAAATGAGGTGCGGATGATCAACCATTACCACCG
GATTAGCCCCGTGCCCAACGTGAAGTTCGTCACGTCGTACATAGCCGAGC
TCCCACACATCCTTGTGGTGGTCGTGCGGCCGATTGCAAGAGGCGCCGAG
GTCCTGATTGACTACGGACCTAACTACTGGTGTGGGAAGTACCACGCACC
ACCCGCAGATCCGCCGGGGATCGACGACCCGCCCGAGGAGAGAGTGATGG
AGGTGGAAGAGGAGTAAATGCCGGTGCTTTATGATAAGGATGGTGTGGAG
ACCATGGGAGCCATGGAGGGCACCAAGCCATTGCAGTGGCCCAACAAGGT
CCTGTTTTCCCAGAAGCTCAAGTGGGCACCTTCATCTGCAGGGCAGGACA
TCAAGGAAAGCTTCCGTCGCCGTCTCCTCCCAGGTATCGAAGTCCGCTAC
ATCACCGAGCCCTCCCACGTCTTGAAAGGGCAGTACGGCGTGTACGCTAC
CCGTGAATTCGCGCCCTTCGACGTCATAGGGGAGTATGTGGGCCGCGTTG
TCCCTCCCAAGGTGTGTGGGGAGTACGTGGCGACCATTGACTGGGAGGAC
TGCCGCTTGTCGGACGGGGCTGGACACCTGTGGGGGGTCGACTCGGCCGT
GTACGGAAATGAGGTGCGGATGATCAACCATTACCACCGGATTAGCCCCG
TGCCCAACGTGAAGTTCGTCACGTCGTACATAGCCGAGCTCCCACACATC
CTTGTGGTGGTCGTGCGGCCGATTGCAAGAGGCGCCGAGGTCCTGATTGA
CTACGGACCTAACTACTGGTGTGGGAAGTACCACGCACCACCCGCAGATC
CGCCGGGGATCGACGACCCGCCCGAGGAGAGAGTGATGGAGGTGGAAGAG
GAGTAAATGCCGGTGCTTTATGATAAGGATGGTGTGGAGACCATGGGAGC
CATGGAGGGCACCAAGCCATTGCAGTGGCCCAACAAGGTCCTGTTTTCCC
AGAAGCTCAAGTGGGCACCTTCATCTGCAGGGCAGGACATCAAGGAAAGC
TTCCGTCGCCGTCTCCTCCCAGGTATCGAAGTCCGCTACATCACCGAGCC
CTCCCACGTCTTGAAAGGGCAGTACGGCGTGTACGCTACCCGTGAATTCG
CGCCCTTCGACGTCATAGGGGAGTATGTGGGCCGCGTTGTCCCTCCCAAG
GTGTGTGGGGAGTACGTGGCGACCATTGACTGGGAGGACTGCCGCTTGTC
GGACGGGGCTGGACACCTGTGGGGGGTCGACTCGGCCGTGTACGGAAATG
AGGTGCGGATGATCAACCATTACCACCGGATTAGCCCCGTGCCCAACGTG
AAGTTCGTCACGTCGTACATAGCCGAGCTCCCACACATCCTTGTGGTGGT
CGTGCGGCCGATTGCAAGAGGCGCCGAGGTCCTGATTGACTACGGACCTA
ACTACTGGTGTGGGAAGTACCACGCACCACCCGCAGATCCGCCGGGGATC
GACGACCCGCCCGAGGAGAGAGTGATGGAGGTGGAAGAGGAGTAA

Synonyms

Publications