jgi.p|Nanoce1779_2|609624, mRNA_10077 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|609624
Unique Name	mRNA_10077
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2570
Alignment location	scaffold_46:61264..64502 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	609710
Track	FilteredModels2
ProteinId	609624

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_46	supercontig	scaffold_46:61264..64502 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609624	gene_10077	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609624	mRNA_10077-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10077	CDS_10077	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_46:61264..64502+
coding sequence from alignment at scaffold_46:61264..64502+

mRNA sequence

>mRNA_10077 ID=mRNA_10077|Name=jgi.p|Nanoce1779_2|609624|organism=Nannochloropsis oceanica|type=mRNA|length=2570bp
CCCTTCTTCACGCCATTCGTCCCCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTTCTCCGATGAAGAAGAAGAAGGCGAAGAGGAAGAACGAGAT
GGACTCTTGATCCAAAAAGGTGGCGCCATCCTCAAATCCCGTCTCGTCAA
AGAAGCATCCATCCCCCCGCTCCCCTCCCACCTCCTTCCCCTCCCTGAGT
GCAAGGGCAAGGGGGGCAGTCGAGCCACCACCTCTCAAGACGCCTATGGG
AACGACATACCCCAAACAAAAAAGCGCAAAACCCGCAAGGAGAAAATGGC
AGGAGACCAACTGAAGAAGGAGCGGGAGCAGCGTGAGGAGGGGGAACGAG
GCGGTACAAATGCCGGACTGCTCCCTTCTTCCTTCACTTCCTCCTTCCCT
CCTTCCTCTTGCTCGGATCGGTCCTCAGGCCTGGCACAGACCGTCGCAGA
GCTGCTGATGAATTATCAACCTTCCTCTTGTGAGCGGCGTCCTTTTTATT
GCCGTATTTGTAGGTATCAGGGAAATAATATTGATGATCTGAAGGAGCAT
AAGAAGAGTGAGATGCACGTCATGGCTGAGGAAGGGGAGCGCAAACTGGC
CTTTTGCCGATTGTGTCGGAAGCAATTTACTAGTCCTGAGCAATTAAAGG
GTCACTTGAAAGGAAAGCCCCACCAGGAGTTGTTGATGAGACGGAGGCGG
GGGGGAGGAGGAGTGGCAGGCAGAGAGGGAGGAAAAGGATTAGTGTATGG
GTAAAGGAGTGGAAAAGAATGATCGACTGAACGCAGACTGTTTTTCTTGT
CTGGCTTGGACGAGCATCGCTCTTCATATTGTGCCACCTTTCTTAGAAAT
ATGGGGCATGGACACAGGTGTGGCGTAGAGCCACGCATATAGTACCCAAA
TTAACCTCCTCTGGTCTGATTGTGGTGGAGTGCTTGGAGCCCGGCAAAAA
CTAGGAAGAGAGGTATGCCTTATAAATCTTGAACGTAAGAACGTTACTGA
AATAGCCAATTTCCTCTTGTGTGTAGTTGTAAAGCGCGCGGATAAAGGAC
GGCGGGACAAATCAGGGACAAAAGCACAATGGCTTCTGAGGAAACATGCC
CTGAAACGCTGAAACGCTTTTGCTTCAATCGATTGGTCAACTTGCCAAAC
CCACCCCCTTCACTCAAGCACCACCCATATATACACAGGCAAGACAACAA
TAGAAAAAATGACAAGGGGGTCATGTCGCCGGGGACGTGAGCGGAGAAGA
AAGGGCACTGCATTACTAGGGCTGCTGCTCGTTGCAGCCGCCGCTACATC
AATAGCAGCAGTATCACGACATGGTCCCACCGCCACCAGCACGGACATCC
GGAGCAGAAGCAGCAGCAGCTGCTTCCTCTTACCCCACGGCTGTCAGCGA
CCGCCACGCCGGGTAGTAGAAGCTCCCACGTCCGCTCACCGTAGTGGCGG
TGGTGGTAGTGGGAAGGGGAGTAAGGAGAAGCGGCGAGAGCGAGGCCGTG
GTAGCGGCTCCTCCTCTTCCTCACAATTCTCACCACGTACGCAGTCCTTC
TCCTCCTCTTTTGCCCCTCCAACCAACTCGGACGAGATGCCGGTGCTTTA
TGATAAGGATGGTGTGGAGACCATGGGAGCCATGGAGGGCACCAAGCCAT
TGCAGTGGCCCAACAAGGTCCTGTTTTCCCAGAAGCTCAAGTGGGCACCT
TCATCTGCAGGGCAGGACATCAAGGAAAGCTTCCGTCGCCGTCTCCTCCC
AGGTATCGAAGTCCGCTACATCACCGAGCCCTCCCACGTCTTGAAAGGGC
AGTACGGCGTGTACGCTACCCGTGAATTCGCGCCCTTCGACGTCATAGGG
GAGTATGTGGGCCGCGTTGTCCCTCCCAAGGTGTGTGGGGAGTACGTGGC
GACCATTGACTGGGAGGACTGCCGCTTGTCGGACGGGGCTGGACACCTGT
GGGGGGTCGACTCGGCCGTGTACGGAAGTGAGTGACGGAGTGAGAGCAGG
GTGCAGGGGAGCATGGACAAGATGTGCGGGCAAAATAGTTTCATTTGGCC
ATCGATTTCGGATACACAATGATGCAGTTACCTACTTTCCTCCTTCCCCC
CCTTTTGTGCCCTCCAACCCACCCTCAGATGAGGTGCGGATGATCAACCA
TTACCACCGGATTAGCCCCGTGCCCAACGTGAAGTTCGTCACGTCGTACA
TAGCCGAGCTCCCACACATCCTTGTGGTGGTCGTGCGGCCGATTGCAAGA
GGCGCCGAGGTCCTGATTGACTACGGGTGAGTGAGTAAATGACTGTGACG
GGGTGTATGTGTAGTACCTGTAGTACCACATACAGTATGTAGGAGACCGA
AGTCTAATTGATCCCTCTGGCCCACTTTCTTGTGCTCGCCTTTCCTTCCC
CTAGACCTAACTACTGGTGTGGGAAGTACCACGCACCACCCGCAGATCCG
CCGGGGATCGACGACCCGCCCGAGGAGAGAGTGATGGAGGTGGAAGAGGA
GTAAGATGAAGGTAGCTACTGAGTAAGGGGATAAAAGAAAAAGAAGAAGA
AAGAAATGACACGAGTGGAG

protein sequence of jgi.p|Nanoce1779_2|609624

>mRNA_10077-protein ID=mRNA_10077-protein|Name=jgi.p|Nanoce1779_2|609624|organism=Nannochloropsis oceanica|type=polypeptide|length=153bp
MAGDQLKKEREQREEGERGGTNAGLLPSSFTSSFPPSSCSDRSSGLAQTV
AELLMNYQPSSCERRPFYCRICRYQGNNIDDLKEHKKSEMHVMAEEGERK
LAFCRLCRKQFTSPEQLKGHLKGKPHQELLMRRRRGGGGVAGREGGKGLV
YG*

mRNA from alignment at scaffold_46:61264..64502+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10077 ID=mRNA_10077|Name=jgi.p|Nanoce1779_2|609624|organism=Nannochloropsis oceanica|type=mRNA|length=3239bp|location=Sequence derived from alignment at scaffold_46:61264..64502+ (Nannochloropsis oceanica)
CCCTTCTTCACGCCATTCGTCCCCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TTCTCCGATGAAGAAGAAGAAGGCGAAGAGGAAGAACGAGATGGACTCTT
GATCCAAAAAGGTGGCGCCATCCTCAAATCCCGTCTCGTCAAAGAAGCAT
CCATCCCCCCGCTCCCCTCCCACCTCCTTCCCCTCCCTGAGTGCAAGGGC
AAGGGGGGCAGTCGAGCCACCACCTCTCAAGACGCCTATGGGAACGACAT
ACCCCAAACAAAAAAGCGCAAAACCCGCAAGGAGAAAATGGCAGGAGACC
AACTGAAGAAGGAGCGGGAGCAGCGTGAGGAGGGGGAACGAGGCGGTACA
AATGCCGGACTGCTCCCTTCTTCCTTCACTTCCTCCTTCCCTCCTTCCTC
TTGCTCGGATCGGTCCTCAGGCCTGGCACAGACCGTCGCAGAGCTGCTGA
TGAATTATCAACCTTCCTCTTGTGAGCGGCGTCCTTTTTATTGCCGTATT
TGTAGGTATCAGGGAAATAATATTGATGATCTGAAGGAGCATAAGAAGAG
TGAGATGCACGTCATGGCTGAGGAAGGGGAGCGCAAACTGGCCTTTTGCC
GATTGTGTCGGAAGCAATTTACTAGTCCTGAGCAATTAAAGGGTCACTTG
AAAGGAAAGCCCCACCAGGAGTTGTTGATGAGACGGAGGCGGGGGGGAGG
AGGAGTGGCAGGCAGAGAGGGAGGAAAAGGATTAGTGTATGGGTAAAGGA
GTGGAAAAGAATGATCGACTGAACGCAGACTGTTTTTCTTGTCTGGCTTG
GACGAGCATCGCTCTTCATATTGTGCCACCTTTCTTAGAAATATGGGGCA
TGGACACAGGTGTGGCGTAGAGCCACGCATATAGTACCCAAATTAACCTC
CTCTGGTCTGATTGTGGTGGAGTGCTTGGAGCCCGGCAAAAACTAGGAAG
AGAGGTATGCCTTATAAATCTTGAACGTAAGAACGTTACTGAAATAGCCA
ATTTCCTCTTGTGTGTAGTTGTAAAGCGCGCGGATAAAGGACGGCGGGAC
AAATCAGGGACAAAAGCACAATGGCTTCTGAGGAAACATGCCCTGAAACG
CTGAAACGCTTTTGCTTCAATCGATTGGTCAACTTGCCAAACCCACCCCC
TTCACTCAAGCACCACCCATATATACACAGGCAAGACAACAATAGAAAAA
ATGACAAGGGGGTCATGTCGCCGGGGACGTGAGCGGAGAAGAAAGGGCAC
TGCATTACTAGGGCTGCTGCTCGTTGCAGCCGCCGCTACATCAATAGCAG
CAGTATCACGACATGGTCCCACCGCCACCAGCACGGACATCCGGAGCAGA
AGCAGCAGCAGCTGCTTCCTCTTACCCCACGGCTGTCAGCGACCGCCACG
CCGGGTAGTAGAAGGTGAGTTTGTGTCTTTCTTGTCACTGCCTGGCCCAC
GTCCATTCGCTTTTCACCCTATCAGGTGCCTTCCTTTCGTAATGTGTCCG
TCAGCAAGAAGATTTTAACCTTGCATGGAACCCCTCACTATCAGAGCCTA
TCCTGACGACTAAGTGGTCCCATTTTGTCACCCAAAATTAATAGCTCCCA
CGTCCGCTCACCGTAGTGGCGGTGGTGGTAGTGGGAAGGGGAGTAAGGAG
AAGCGGCGAGAGCGAGGCCGTGGTAGCGGCTCCTCCTCTTCCTCACAATT
CTCACCACGTACGCAGTCCTTCTCCTCCTCTTTTGCCCCTCCAACCAACT
CGGACGAGATGCCGGTGCTTTATGATAAGGATGGTGTGGAGACCATGGGA
GCCATGGAGGGCACCAAGCCATTGCAGTGGCCCAACAAGGTACGTGTGTG
TGTGTGTGTGTGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTATGTATGTGTGTGTGTGTATGTGTGTGTGTA
TGTGTGTGTCTGTATGTCTGTCTGTCTGTCTGTCTGTCCATATGCAATGT
CGCCGTACTGGACGATTTGTTCACCCCTCTCCGCCCTCCATGCTTCCTTC
CCTTCCTCTATAGGTCCTGTTTTCCCAGAAGCTCAAGTGGGCACCTTCAT
CTGCAGGGCAGGACATCAAGGAAAGCTTCCGTCGCCGTCTCCTCCCAGGT
ATCGAAGTCCGCTACATCACCGAGCCCTCCCACGTCTTGAAAGGGCAGTA
CGGTACGTGTATAGTTTTCGCGCGGATATGAAAGGCACAGAGACTACGAG
GAAAATAGTTTATTTGTCAATTTATGCAGACTAATGTCCTGACATTCGAT
AACATATAGACCCAATGTCTGCCATCCTATGTTGTCAATTTTATTCACGA
AGAGATTAAACGCGTCGGCATGGATCCTCTCAAATCCTCAGCTCTCCCCT
TCCTCGTCCCCCCCCCACACACAAGGCGTGTACGCTACCCGTGAATTCGC
GCCCTTCGACGTCATAGGGGAGTATGTGGGCCGCGTTGTCCCTCCCAAGG
TGTGTGGGGAGTACGTGGCGACCATTGACTGGGAGGACTGCCGCTTGTCG
GACGGGGCTGGACACCTGTGGGGGGTCGACTCGGCCGTGTACGGAAGTGA
GTGACGGAGTGAGAGCAGGGTGCAGGGGAGCATGGACAAGATGTGCGGGC
AAAATAGTTTCATTTGGCCATCGATTTCGGATACACAATGATGCAGTTAC
CTACTTTCCTCCTTCCCCCCCTTTTGTGCCCTCCAACCCACCCTCAGATG
AGGTGCGGATGATCAACCATTACCACCGGATTAGCCCCGTGCCCAACGTG
AAGTTCGTCACGTCGTACATAGCCGAGCTCCCACACATCCTTGTGGTGGT
CGTGCGGCCGATTGCAAGAGGCGCCGAGGTCCTGATTGACTACGGGTGAG
TGAGTAAATGACTGTGACGGGGTGTATGTGTAGTACCTGTAGTACCACAT
ACAGTATGTAGGAGACCGAAGTCTAATTGATCCCTCTGGCCCACTTTCTT
GTGCTCGCCTTTCCTTCCCCTAGACCTAACTACTGGTGTGGGAAGTACCA
CGCACCACCCGCAGATCCGCCGGGGATCGACGACCCGCCCGAGGAGAGAG
TGATGGAGGTGGAAGAGGAGTAAGATGAAGGTAGCTACTGAGTAAGGGGA
TAAAAGAAAAAGAAGAAGAAAGAAATGACACGAGTGGAG

Coding sequence (CDS) from alignment at scaffold_46:61264..64502+

>mRNA_10077 ID=mRNA_10077|Name=jgi.p|Nanoce1779_2|609624|organism=Nannochloropsis oceanica|type=CDS|length=459bp|location=Sequence derived from alignment at scaffold_46:61264..64502+ (Nannochloropsis oceanica)
ATGGCAGGAGACCAACTGAAGAAGGAGCGGGAGCAGCGTGAGGAGGGGGA
ACGAGGCGGTACAAATGCCGGACTGCTCCCTTCTTCCTTCACTTCCTCCT
TCCCTCCTTCCTCTTGCTCGGATCGGTCCTCAGGCCTGGCACAGACCGTC
GCAGAGCTGCTGATGAATTATCAACCTTCCTCTTGTGAGCGGCGTCCTTT
TTATTGCCGTATTTGTAGGTATCAGGGAAATAATATTGATGATCTGAAGG
AGCATAAGAAGAGTGAGATGCACGTCATGGCTGAGGAAGGGGAGCGCAAA
CTGGCCTTTTGCCGATTGTGTCGGAAGCAATTTACTAGTCCTGAGCAATT
AAAGGGTCACTTGAAAGGAAAGCCCCACCAGGAGTTGTTGATGAGACGGA
GGCGGGGGGGAGGAGGAGTGGCAGGCAGAGAGGGAGGAAAAGGATTAGTG
TATGGGTAA

Synonyms

Publications