jgi.p|Nanoce1779_2|609595, mRNA_10074 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609595
Unique NamemRNA_10074
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length882
Alignment locationscaffold_46:47865..48979 -

Link to JBrowse

Properties
Property NameValue
TranscriptId609681
TrackFilteredModels2
ProteinId609595
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_46supercontigscaffold_46:47865..48979 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609595gene_10074Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609595mRNA_10074-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10074CDS_10074Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10074 ID=mRNA_10074|Name=jgi.p|Nanoce1779_2|609595|organism=Nannochloropsis oceanica|type=mRNA|length=882bp
CCCTCCCTCCCTTCCTCATTCCCCCCCTCTCTCCTCCCCCTCCTCCTTTG
GAACCAAAGGCCCCAGGAAAGATGTAGCTCACTCCAGTCAGGGTATTTGT
CACTTCCTGGATCGAGAAGCCACCTGCCCTTCCCTCCCACCCTCCCTCTC
TCTCTACCCCTTGAGCGAAGGATGTCAGGAAGGAGGGCGAGAGGGAGGAA
GGATTCACGTGCAGCTTGCCCAGGCCATTCATGATGTTTGCCAACTGGCG
GGCGTCGCAGTCCGGTAGCAAGGCCGCCGTACGATCATACAGTAGGGAAA
GGAGGTACTGCTGCTCATCCTTCCGACCCCGACCTTTTCCTTGCTTGCTT
CGGTAGGAAGGAGGAGACAAGGCAGCGGCTACACGGGACAATCTGTTAAT
CATGGTCGCACAGTTCACTTTGTCAAAGCCCCCTACATGCTGCGCCGTCA
CATCCAATAGCGCCAGGGCATCCCCCTCGGCAGAGATTATGGCCTGGTTG
ATCTCCCTTGGGGTGAGAGAGGACGGGGGAGGGAGGAAATTAGGAGAAGG
GGTGCCTGCTGCGGAGGCTGCGGCAGCGTTGGAAGGAATTAGGGGGGGAA
GACGGCGATGGGTTTCCGATACAGGGACTGTTGGACATGGATGGAAAAAG
GCGTGGGTCGTAGTGCTGGGAGCCAGGGCAAAAAGGAGGAGGCTGCACAG
GAAAGGGGAAATGCTGCTGCTACCACCGTTTCTTCTCAAAGTACTGGTGT
CGACTTGTCTAACCCTCCATCTTGGGGCAGCCTGGAGGTTCATGGTCGAG
GTCACGGGTGTCCTACGGGTGCATTATGTAGTCTGTGCCTTTTACCCAAG
GCGCTTCTGATCTCCTCGACCTCCTGGCTCTG
back to top

protein sequence of jgi.p|Nanoce1779_2|609595

>mRNA_10074-protein ID=mRNA_10074-protein|Name=jgi.p|Nanoce1779_2|609595|organism=Nannochloropsis oceanica|type=polypeptide|length=153bp
MVAQFTLSKPPTCCAVTSNSARASPSAEIMAWLISLGVREDGGGRKLGEG
VPAAEAAAALEGIRGGRRRWVSDTGTVGHGWKKAWVVVLGARAKRRRLHR
KGEMLLLPPFLLKVLVSTCLTLHLGAAWRFMVEVTGVLRVHYVVCAFYPR
RF*
back to top

mRNA from alignment at scaffold_46:47865..48979-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10074 ID=mRNA_10074|Name=jgi.p|Nanoce1779_2|609595|organism=Nannochloropsis oceanica|type=mRNA|length=1115bp|location=Sequence derived from alignment at scaffold_46:47865..48979- (Nannochloropsis oceanica)
CCCTCCCTCCCTTCCTCATTCCCCCCCTCTCTCCTCCCCCTCCTCCTTTG
GAACCAAAGGCCCCAGGAAAGATGTAGCTCACTCCAGTCAGGGTATTTGT
CACTTCCTGGATCGAGAAGCCACCTGCCCTTCCCTCCCACCCTCCCTCTC
TCTCTACCCCTTGAGCGAAGGATGTCAGGAAGGAGGGCGAGAGGGAGGAA
GGATTCACGTGCAGCTTGCCCAGGCCATTCATGATGTTTGCCAACTATGT
ATGTCCAAGGGAGGAGGGAATGCCCCAATAAAGGCAGAGTATTCATGAGA
TTAGACGTCAGAGGAACGTAGACACCTCTCCCTATACCCCTCCCTTCCTC
CCCCCCTCTCTCCCTTCCTGCCTACCTGGCGGGCGTCGCAGTCCGGTAGC
AAGGCCGCCGTACGATCATACAGTAGGGAAAGGAGGTACTGCTGCTCATC
CTTCCGACCCCGACCTTTTCCTTGCTTGCTTCGGTAGGAAGGAGGAGACA
AGGCAGCGGCTACACGGGACAATCTGCGTGTCATTATTGTGTCGTGTATG
TGTGCGTATGTGCAGAGGAGATGAGGTTGACCACTCACTCTCAATTGCTC
TCCAACTTGTCTATGGTCATCGTACCTGTTAATCATGGTCGCACAGTTCA
CTTTGTCAAAGCCCCCTACATGCTGCGCCGTCACATCCAATAGCGCCAGG
GCATCCCCCTCGGCAGAGATTATGGCCTGGTTGATCTCCCTTGGGGTGAG
AGAGGACGGGGGAGGGAGGAAATTAGGAGAAGGGGTGCCTGCTGCGGAGG
CTGCGGCAGCGTTGGAAGGAATTAGGGGGGGAAGACGGCGATGGGTTTCC
GATACAGGGACTGTTGGACATGGATGGAAAAAGGCGTGGGTCGTAGTGCT
GGGAGCCAGGGCAAAAAGGAGGAGGCTGCACAGGAAAGGGGAAATGCTGC
TGCTACCACCGTTTCTTCTCAAAGTACTGGTGTCGACTTGTCTAACCCTC
CATCTTGGGGCAGCCTGGAGGTTCATGGTCGAGGTCACGGGTGTCCTACG
GGTGCATTATGTAGTCTGTGCCTTTTACCCAAGGCGCTTCTGATCTCCTC
GACCTCCTGGCTCTG
back to top

Coding sequence (CDS) from alignment at scaffold_46:47865..48979-

>mRNA_10074 ID=mRNA_10074|Name=jgi.p|Nanoce1779_2|609595|organism=Nannochloropsis oceanica|type=CDS|length=459bp|location=Sequence derived from alignment at scaffold_46:47865..48979- (Nannochloropsis oceanica)
ATGGTCGCACAGTTCACTTTGTCAAAGCCCCCTACATGCTGCGCCGTCAC
ATCCAATAGCGCCAGGGCATCCCCCTCGGCAGAGATTATGGCCTGGTTGA
TCTCCCTTGGGGTGAGAGAGGACGGGGGAGGGAGGAAATTAGGAGAAGGG
GTGCCTGCTGCGGAGGCTGCGGCAGCGTTGGAAGGAATTAGGGGGGGAAG
ACGGCGATGGGTTTCCGATACAGGGACTGTTGGACATGGATGGAAAAAGG
CGTGGGTCGTAGTGCTGGGAGCCAGGGCAAAAAGGAGGAGGCTGCACAGG
AAAGGGGAAATGCTGCTGCTACCACCGTTTCTTCTCAAAGTACTGGTGTC
GACTTGTCTAACCCTCCATCTTGGGGCAGCCTGGAGGTTCATGGTCGAGG
TCACGGGTGTCCTACGGGTGCATTATGTAGTCTGTGCCTTTTACCCAAGG
CGCTTCTGA
back to top
Synonyms
Publications