jgi.p|Nanoce1779_2|609587, mRNA_10072 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|609587
Unique Name	mRNA_10072
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1821
Alignment location	scaffold_46:43008..45150 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	609673
Track	FilteredModels2
ProteinId	609587

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_46	supercontig	scaffold_46:43008..45150 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609587	gene_10072	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609587	mRNA_10072-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10072	CDS_10072	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_46:43008..45150+
coding sequence from alignment at scaffold_46:43008..45150+

mRNA sequence

>mRNA_10072 ID=mRNA_10072|Name=jgi.p|Nanoce1779_2|609587|organism=Nannochloropsis oceanica|type=mRNA|length=1821bp
AGGTCGCCCCAAAACCACTTTCTTCTCCATTCACCGCCACCACCGAAAAA
ATGTTTAGTCGTAAAACCCAAGCTGTCGCTGCTGCGTTCGGCACCTTGAC
CCTGTGCCTTGGCCCCGCCACAGTCACGAGGGCCCGCCTGTCTTACCCCA
CCTCCGTCTGTCCCCCAGGAAACGAGACCTGGGAGCTGTCCAAGCTCCGA
GACAACAACACATACAAGAACCAGATTGTCATTATGTCTGCACTCATCCT
ACTGACTGGCACGGGCCTGTACTCTGTCGATGTGTACGATCCTCACCAAT
CAAGCCTGTGGGACTGTTCGACTGCTTCCCTCTTAACCTCAGGGGAAGAG
CTCCATGTCGCCGTAGTTAGCAATAGCGATAAATGGTTAGAGGCCTACAA
TCTTTCTCTCCTAAGCCCACGACACGCTGTAGAGTCCGTCCGTCCCCCTC
CCTACGCTTTCAAGGGCCCACGACCTCTTCGGGTTGCTGCTTTCCTTACC
AAAACCTTTGTCAGCCTGGCAGCCTATGGAAGTCATCTACTTGTAAAATG
GGAAGAATTGGAAGCAATCATGGAGAACAACCTTCTTCCCCCCGGGTCCC
CTAAACCCTGCGATGGTTACTGGGTCCACTTTATCATTGTGTGCATCATT
GTCTTCTCGACTACGGGGTATATGGTGGTGGAATTCTACAGTTCTAGCAA
GCATTCTCCGAAAGAAGACGACCCCGAGGCCGTTATTGGCACCATAGTGG
GGACTGGGCTGGATCAGCCGACCGCGGGCGTGATTGCGGTGGTGCCCCTC
TGGACTGTGACGCAGGCGGCGAGACTGGAGGAAGAGAACGCTAAGAAGGC
GATGTTTGCCAGGATGAAAAGCTTGTTGATGGAGCTCTCGATCCTCTTTG
TAATCGTGCATGGCCTGCCTGCTGGTCAGCTCGATACTTTACACAATCGG
AACGTACGATGTGGGGTCCATGTTGATGGCGGCCACGCTAACTCGCAAGT
ATGTGGACGAGCAAGACGTCAAGACCGCCATTGACCTTTCGAAGGGCACC
AACGGGAAGAACAAGCGCCAGTATAAGGAGCAGCGAGCCTTGTATCCCAC
TTTTTTAGGCCGCACATTTCTGGTGCCGATACTGCGTGAATATGAGAATT
GGGATTTTGTCGATACCTTCATGGCCAAAGAATGGGGTAGGATGGGCGAC
AACGAGCTAATTAAAGACGAGGGTTTGATCGGCAGCGTTTTGGCTGACCT
CTTTAGCCAGGAGGCGGAGGGCGAGGCAGCCCGGAGCCCCATCTATTCGA
CGTTCTTTGAAGAGCTCGGTGGGACAGTTGTTGGTGGACTGCTGGCTAAG
AACGCGGAGGGGGCGGAGGCTGTGACGCCTTTCACTATGATTAAGATCAC
CAAGCAGCGTTGGAATCTGGCCCGTGTTCTCGGCATCACCTTATCGGTGC
GCTGCCAGCGAGGCGTCCCTTCATCTACATCCACGACGTCTTCCGCCCGA
TTTGGCCGCCTCCGGAGCGAGTCAGTCTTCTCCCGCGGCGCTTCTTCCTC
CACCATCGACGTGGACGGGGCGGGAGCGCTGGTGGGCGATGCCTGTTCTA
CGTTGAAAAAGGGGGACGTGACTTGTACCAAGGTAAACAATTTTTACTGG
AATCTTAGGCGTGTGTTTTCGGTGAAGAGCCGCAGCCCCGTCTCCTCCCG
TGCAAGCTCTCAGTCTATATGTGTGAAGTAAGCGTGGAGCGAGTGGTGTG
TGTGTGTGTGGGTATGTGTATGTGTCCGTGCACAATGTCACATATCGTGT
CTTCAGAAGCCAACAAGTAAA

protein sequence of jgi.p|Nanoce1779_2|609587

>mRNA_10072-protein ID=mRNA_10072-protein|Name=jgi.p|Nanoce1779_2|609587|organism=Nannochloropsis oceanica|type=polypeptide|length=328bp
MFSRKTQAVAAAFGTLTLCLGPATVTRARLSYPTSVCPPGNETWELSKLR
DNNTYKNQIVIMSALILLTGTGLYSVDVYDPHQSSLWDCSTASLLTSGEE
LHVAVVSNSDKWLEAYNLSLLSPRHAVESVRPPPYAFKGPRPLRVAAFLT
KTFVSLAAYGSHLLVKWEELEAIMENNLLPPGSPKPCDGYWVHFIIVCII
VFSTTGYMVVEFYSSSKHSPKEDDPEAVIGTIVGTGLDQPTAGVIAVVPL
WTVTQAARLEEENAKKAMFARMKSLLMELSILFVIVHGLPAGQLDTLHNR
NVRCGVHVDGGHANSQVCGRARRQDRH*

mRNA from alignment at scaffold_46:43008..45150+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10072 ID=mRNA_10072|Name=jgi.p|Nanoce1779_2|609587|organism=Nannochloropsis oceanica|type=mRNA|length=2143bp|location=Sequence derived from alignment at scaffold_46:43008..45150+ (Nannochloropsis oceanica)
AGGTCGCCCCAAAACCACTTTCTTCTCCATTCACCGCCACCACCGAAAAA
ATGTTTAGTCGTAAAACCCAAGCTGTCGCTGCTGCGTTCGGCACCTTGAC
CCTGTGCCTTGGCCCCGCCACAGTCACGAGGGCCCGCCTGTCTTACCCCA
CCTCCGTCTGTCCCCCAGGAAACGAGACCTGGGAGCTGTCCAAGCTCCGA
GACAACAACACATACAAGAACCAGATTGTCATTATGTCTGCACTCATCCT
ACTGACTGGCACGGGCCTGTACTCTGTCGATGTACGTAGGTAGATAGGTG
CCATCTTCCTCCTCCCCATGGCTTGACACAGAGTGCGTGCTTCTTCCCTT
CTCCACACATCTTCTTCTCACATCACCCAGCCCCTTGCTGTAGCGATAAG
CTGTCCTGGTACTATCCCCATCTTCTCTATTCCTCGAAATGCCCTCCTCG
TAACCTTTCTTTCGTCCTCCTTCCTTCCAGGTGTACGATCCTCACCAATC
AAGCCTGTGGGACTGTTCGACTGCTTCCCTCTTAACCTCAGGGGAAGAGC
TCCATGTCGCCGTAGTTAGCAATAGCGATAAATGGTTAGAGGTTAGTAAG
AATAGTGTTTTTTCCCTGATTCAAACTGAAAATACCCCCTTCCTTCGAAT
TTTAATCACCCTTTCGCCTTCCATCTCCCTCCCTCTCCCCCTCCCTCCCT
TACTCCTCTCCCAGGCCTACAATCTTTCTCTCCTAAGCCCACGACACGCT
GTAGAGTCCGTCCGTCCCCCTCCCTACGCTTTCAAGGGCCCACGACCTCT
TCGGGTTGCTGCTTTCCTTACCAAAACCTTTGTCAGCCTGGCAGCCTATG
GAAGTCATCTACTTGTAAAATGGGAAGAATTGGAAGCAATCATGGAGAAC
AACCTTCTTCCCCCCGGGTCCCCTAAACCCTGCGATGGTTACTGGGTCCA
CTTTATCATTGTGTGCATCATTGTCTTCTCGACTACGGGGTATATGGTGG
TGGAATTCTACAGTTCTAGCAAGCATTCTCCGAAAGAAGACGACCCCGAG
GCCGTTATTGGCACCATAGTGGGGACTGGGCTGGATCAGCCGACCGCGGG
CGTGATTGCGGTGGTGCCCCTCTGGACTGTGACGCAGGCGGCGAGACTGG
AGGAAGAGAACGCTAAGAAGGCGATGTTTGCCAGGATGAAAAGCTTGTTG
ATGGAGCTCTCGATCCTCTTTGTAATCGTGCATGGCCTGCCTGCTGGTCA
GCTCGATACTTTACACAATCGGAACGTACGATGTGGGGTCCATGTTGATG
GCGGCCACGCTAACTCGCAAGTATGTGGACGAGCAAGACGTCAAGACCGC
CATTGACCTTTCGAAGGGCACCAACGGGAAGAACAAGCGCCAGTATAAGG
AGCAGCGAGCCTTGTATCCCACTTTTTTAGGCCGCACATTTCTGGTGCCG
ATACTGCGTGAATATGAGAATTGGGATTTTGTCGATACCTTCATGGCCAA
AGAATGGGGTAGGATGGGCGACAACGAGCTAATTAAAGACGAGGGTTTGA
TCGGCAGCGTTTTGGCTGACCTCTTTAGCCAGGAGGCGGAGGGCGAGGCA
GCCCGGAGCCCCATCTATTCGACGTTCTTTGAAGAGCTCGGTGGGACAGT
TGTTGGTGGACTGCTGGCTAAGAACGCGGAGGGGGCGGAGGCTGTGACGC
CTTTCACTATGATTAAGATCACCAAGCAGCGTTGGAATCTGGCCCGTGTT
CTCGGCATCACCTTATCGGTGCGCTGCCAGCGAGGCGTCCCTTCATCTAC
ATCCACGACGTCTTCCGCCCGATTTGGCCGCCTCCGGAGCGAGTCAGTCT
TCTCCCGCGGCGCTTCTTCCTCCACCATCGACGTGGACGGGGCGGGAGCG
CTGGTGGGCGATGCCTGTTCTACGTTGAAAAAGGGGGACGTGACTTGTAC
CAAGGTAAACAATTTTTACTGGAATCTTAGGCGTGTGTTTTCGGTGAAGA
GCCGCAGCCCCGTCTCCTCCCGTGCAAGCTCTCAGTCTATATGTGTGAAG
TAAGCGTGGAGCGAGTGGTGTGTGTGTGTGTGGGTATGTGTATGTGTCCG
TGCACAATGTCACATATCGTGTCTTCAGAAGCCAACAAGTAAA

Coding sequence (CDS) from alignment at scaffold_46:43008..45150+

>mRNA_10072 ID=mRNA_10072|Name=jgi.p|Nanoce1779_2|609587|organism=Nannochloropsis oceanica|type=CDS|length=2952bp|location=Sequence derived from alignment at scaffold_46:43008..45150+ (Nannochloropsis oceanica)
ATGTTTAGTCGTAAAACCCAAGCTGTCGCTGCTGCGTTCGGCACCTTGAC
CCTGTGCCTTGGCCCCGCCACAGTCACGAGGGCCCGCCTGTCTTACCCCA
CCTCCGTCTGTCCCCCAGGAAACGAGACCTGGGAGCTGTCCAAGCTCCGA
GACAACAACACATACAAGAACCAGATTGTCATTATGTCTGCACTCATCCT
ACTGACTGGCACGGGCCTGTACTCTGTCGATGTGTACGATCCTCACCAAT
CAAGCCTGTGGGACTGTTCGACTGCTTCCCTCTTAACCTCAGGGGAAGAG
CTCCATGTCGCCGTAGTTAGCAATAGCGATAAATGGTTAGAGGCCTACAA
TCTTTCTCTCCTAAGCCCACGACACGCTGTAGAGTCCGTCCGTCCCCCTC
CCTACGCTTTCAAGGGCCCACGACCTCTTCGGGTTGCTGCTTTCCTTACC
AAAACCTTTGTCAGCCTGGCAGCCTATGGAAGTCATCTACTTGTAAAATG
GGAAGAATTGGAAGCAATCATGGAGAACAACCTTCTTCCCCCCGGGTCCC
CTAAACCCTGCGATGGTTACTGGGTCCACTTTATCATTGTGTGCATCATT
GTCTTCTCGACTACGGGGTATATGGTGGTGGAATTCTACAGTTCTAGCAA
GCATTCTCCGAAAGAAGACGACCCCGAGGCCGTTATTGGCACCATAGTGG
GGACTGGGCTGGATCAGCCGACCGCGGGCGTGATTGCGGTGGTGCCCCTC
TGGACTGTGACGCAGGCGGCGAGACTGGAGGAAGAGAACGCTAAGAAGGC
GATGTTTGCCAGGATGAAAAGCTTGTTGATGGAGCTCTCGATCCTCTTTG
TAATCGTGCATGGCCTGCCTGCTGGTCAGCTCGATACTTTACACAATCGG
AACGTACGATGTGGGGTCCATGTTGATGGCGGCCACGCTAACTCGCAAGT
ATGTGGACGAGCAAGACGTCAAGACCGCCATTGAATGTTTAGTCGTAAAA
CCCAAGCTGTCGCTGCTGCGTTCGGCACCTTGACCCTGTGCCTTGGCCCC
GCCACAGTCACGAGGGCCCGCCTGTCTTACCCCACCTCCGTCTGTCCCCC
AGGAAACGAGACCTGGGAGCTGTCCAAGCTCCGAGACAACAACACATACA
AGAACCAGATTGTCATTATGTCTGCACTCATCCTACTGACTGGCACGGGC
CTGTACTCTGTCGATGTGTACGATCCTCACCAATCAAGCCTGTGGGACTG
TTCGACTGCTTCCCTCTTAACCTCAGGGGAAGAGCTCCATGTCGCCGTAG
TTAGCAATAGCGATAAATGGTTAGAGGCCTACAATCTTTCTCTCCTAAGC
CCACGACACGCTGTAGAGTCCGTCCGTCCCCCTCCCTACGCTTTCAAGGG
CCCACGACCTCTTCGGGTTGCTGCTTTCCTTACCAAAACCTTTGTCAGCC
TGGCAGCCTATGGAAGTCATCTACTTGTAAAATGGGAAGAATTGGAAGCA
ATCATGGAGAACAACCTTCTTCCCCCCGGGTCCCCTAAACCCTGCGATGG
TTACTGGGTCCACTTTATCATTGTGTGCATCATTGTCTTCTCGACTACGG
GGTATATGGTGGTGGAATTCTACAGTTCTAGCAAGCATTCTCCGAAAGAA
GACGACCCCGAGGCCGTTATTGGCACCATAGTGGGGACTGGGCTGGATCA
GCCGACCGCGGGCGTGATTGCGGTGGTGCCCCTCTGGACTGTGACGCAGG
CGGCGAGACTGGAGGAAGAGAACGCTAAGAAGGCGATGTTTGCCAGGATG
AAAAGCTTGTTGATGGAGCTCTCGATCCTCTTTGTAATCGTGCATGGCCT
GCCTGCTGGTCAGCTCGATACTTTACACAATCGGAACGTACGATGTGGGG
TCCATGTTGATGGCGGCCACGCTAACTCGCAAGTATGTGGACGAGCAAGA
CGTCAAGACCGCCATTGAATGTTTAGTCGTAAAACCCAAGCTGTCGCTGC
TGCGTTCGGCACCTTGACCCTGTGCCTTGGCCCCGCCACAGTCACGAGGG
CCCGCCTGTCTTACCCCACCTCCGTCTGTCCCCCAGGAAACGAGACCTGG
GAGCTGTCCAAGCTCCGAGACAACAACACATACAAGAACCAGATTGTCAT
TATGTCTGCACTCATCCTACTGACTGGCACGGGCCTGTACTCTGTCGATG
TGTACGATCCTCACCAATCAAGCCTGTGGGACTGTTCGACTGCTTCCCTC
TTAACCTCAGGGGAAGAGCTCCATGTCGCCGTAGTTAGCAATAGCGATAA
ATGGTTAGAGGCCTACAATCTTTCTCTCCTAAGCCCACGACACGCTGTAG
AGTCCGTCCGTCCCCCTCCCTACGCTTTCAAGGGCCCACGACCTCTTCGG
GTTGCTGCTTTCCTTACCAAAACCTTTGTCAGCCTGGCAGCCTATGGAAG
TCATCTACTTGTAAAATGGGAAGAATTGGAAGCAATCATGGAGAACAACC
TTCTTCCCCCCGGGTCCCCTAAACCCTGCGATGGTTACTGGGTCCACTTT
ATCATTGTGTGCATCATTGTCTTCTCGACTACGGGGTATATGGTGGTGGA
ATTCTACAGTTCTAGCAAGCATTCTCCGAAAGAAGACGACCCCGAGGCCG
TTATTGGCACCATAGTGGGGACTGGGCTGGATCAGCCGACCGCGGGCGTG
ATTGCGGTGGTGCCCCTCTGGACTGTGACGCAGGCGGCGAGACTGGAGGA
AGAGAACGCTAAGAAGGCGATGTTTGCCAGGATGAAAAGCTTGTTGATGG
AGCTCTCGATCCTCTTTGTAATCGTGCATGGCCTGCCTGCTGGTCAGCTC
GATACTTTACACAATCGGAACGTACGATGTGGGGTCCATGTTGATGGCGG
CCACGCTAACTCGCAAGTATGTGGACGAGCAAGACGTCAAGACCGCCATT
GA

Synonyms

Publications